Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0620G132 Amborella trichopoda HOM05D004623 ORTHO05D005100 1.7e-192 676.0 381 100.0
PSO063G4918 Papaver somniferum HOM05D004623 ORTHO05D005100 8.4e-160 567.4 381 82.7
GSVIVG01019647001 Vitis vinifera HOM05D004623 ORTHO05D005100 1.1e-159 567.0 381 85.3
VMungo0720G2137 Vigna mungo HOM05D004623 ORTHO05D005100 6.6e-157 557.8 381 82.9
arahy.Tifrunner.gnm1.ann1.6R22RC Arachis hypogaea HOM05D004623 ORTHO05D005100 2.1e-155 552.7 381 81.6
CDE09G0653 Ceratophyllum demersum HOM05D004623 ORTHO05D005100 4.7e-155 551.6 381 82.9
Medtr1g077850 Medicago truncatula HOM05D004623 ORTHO05D005100 6.2e-155 551.2 381 83.2
Psat6g053240 Pisum sativum HOM05D004623 ORTHO05D005100 6.2e-155 551.2 381 83.2
Ca_09948_v3 Cicer arietinum L. HOM05D004623 ORTHO05D005100 1.4e-154 550.1 381 82.7
Glyma.20G217500 Glycine max HOM05D004623 ORTHO05D005100 4.0e-154 548.5 382 82.5
RcHm_v2.0_Chr7g0186861 Rosa chinensis HOM05D004623 ORTHO05D005100 1.5e-153 546.6 381 80.8
TPR.G34807 Trifolium pratense HOM05D004623 ORTHO05D005100 1.5e-153 546.6 375 84.0
PGR031G2083 Punica granatum HOM05D004623 ORTHO05D005100 2.6e-153 545.8 381 81.1
Cc08_g16710 Coffea canephora HOM05D004623 ORTHO05D005100 5.8e-153 544.7 382 79.8
Lj5g0020025 Lotus japonicus HOM05D004623 ORTHO05D005100 5.8e-153 544.7 381 81.9
Eucgr.D01683 Eucalyptus grandis HOM05D004623 ORTHO05D005100 7.6e-153 544.3 381 82.2
PSO782G3970 Papaver somniferum HOM05D004623 ORTHO05D005100 7.6e-153 544.3 381 80.8
Prupe.5G129200 Prunus persica HOM05D004623 ORTHO05D005100 9.9e-153 543.9 381 81.4
Lalb_Chr21g0311621 Lupinus albus HOM05D004623 ORTHO05D005100 2.2e-152 542.7 381 80.3
ClCG10G000820 Citrullus lanatus HOM05D004623 ORTHO05D005100 3.8e-152 542.0 382 80.6
MD14G1126200 Malus domestica HOM05D004623 ORTHO05D005100 2.4e-151 539.3 382 80.1
Atru.chr9.1891 Acer truncatum HOM05D004623 ORTHO05D005100 3.2e-151 538.9 381 80.3
Sed0004618 Sechium edule HOM05D004623 ORTHO05D005100 3.2e-151 538.9 382 79.8
FAN04G2529 Fragaria x ananassa HOM05D004623 ORTHO05D005100 7.1e-151 537.7 388 71.6
CiPaw.12G077700 Carya illinoinensis HOM05D004623 ORTHO05D005100 6.0e-150 534.6 381 81.4
Rhsim02G0251800 Rhododendron simsii HOM05D004623 ORTHO05D005100 1.3e-147 526.9 420 68.6
Aqoxy7G00024 Aquilegia oxysepala HOM05D004623 ORTHO05D005100 4.8e-147 525.0 381 79.8
Gorai.004G129800 Gossypium raimondii HOM05D004623 ORTHO05D005100 1.8e-146 523.1 413 74.6
AUR62007050 Chenopodium quinoa HOM05D004623 ORTHO05D005100 2.4e-146 522.7 381 79.5
Lj8A201G75 Lonicera japonica HOM05D004623 ORTHO05D005100 2.4e-146 522.7 397 77.3
Aa31LG9G240 Aethionema arabicum HOM05D004623 ORTHO05D005100 5.8e-145 518.1 385 74.8
Os03g0113800 Oryza sativa ssp. japonica HOM05D004623 ORTHO05D005100 2.2e-144 516.2 381 78.5
MELO3C013775.2 Cucumis melo HOM05D004623 ORTHO05D005100 2.1e-142 509.6 439 63.6
Phvul.L005101 Phaseolus vulgaris HOM05D004623 ORTHO05D005100 7.9e-142 507.7 381 78.0
Hund11352 Selenicereus undatus HOM05D004623 ORTHO05D005100 7.9e-142 507.7 381 77.7
arahy.Tifrunner.gnm1.ann1.CHU5UJ Arachis hypogaea HOM05D004623 ORTHO05D005100 1.3e-141 506.9 381 77.2
Hma1.2p1_0456F.1_g156590 Hydrangea macrophylla HOM05D004623 ORTHO05D005100 6.7e-141 504.6 381 77.7
CANSAT21G1410 Cannabis sativa HOM05D004623 ORTHO05D005100 2.5e-140 502.7 375 77.1
TAR629G1871 Trochodendron aralioides HOM05D004623 ORTHO05D005100 5.6e-140 501.5 381 78.0
Zm00001eb220090 Zea mays HOM05D004623 ORTHO05D005100 1.6e-139 500.0 387 75.7
FAN08G2217 Fragaria x ananassa HOM05D004623 ORTHO05D005100 2.8e-139 499.2 381 76.6
TAR375G0778 Trochodendron aralioides HOM05D004623 ORTHO05D005100 2.8e-139 499.2 381 79.3
Dinv12926 Davidia involucrata HOM05D004623 ORTHO05D005100 3.7e-139 498.8 381 76.4
FAN18G3535 Fragaria x ananassa HOM05D004623 ORTHO05D005100 3.7e-139 498.8 381 76.9
MD06G1118100 Malus domestica HOM05D004623 ORTHO05D005100 3.7e-139 498.8 356 75.6
FvH4_5g10960 Fragaria vesca HOM05D004623 ORTHO05D005100 8.1e-139 497.7 382 77.0
FAN13G2046 Fragaria x ananassa HOM05D004623 ORTHO05D005100 8.1e-139 497.7 382 76.7
TWI81G0490 Tripterygium wilfordii HOM05D004623 ORTHO05D005100 1.4e-138 496.9 381 75.3
Nn1g00375 Nelumbo nucifera HOM05D004623 ORTHO05D005100 1.8e-138 496.5 381 76.6
Dinv16877 Davidia involucrata HOM05D004623 ORTHO05D005100 1.2e-137 493.8 356 81.2
Cfa011928 Carpinus fangiana HOM05D004623 ORTHO05D005100 3.4e-137 492.3 381 75.6
Ciclev10019829m.g Citrus clementina HOM05D004623 ORTHO05D005100 1.7e-136 490.0 381 76.4
Glyma.10G172800 Glycine max HOM05D004623 ORTHO05D005100 2.2e-136 489.6 382 75.7
SGA_v2.0_scaffold127G33962 Striga asiatica HOM05D004623 ORTHO05D005100 6.4e-136 488.0 381 73.2
Thecc.03G221500 Theobroma cacao HOM05D004623 ORTHO05D005100 1.1e-135 487.3 381 75.1
SalBow1G2042 Salvia bowleyana HOM05D004623 ORTHO05D005100 1.9e-135 486.5 378 74.9
CSS0032200 Camellia sinensis var. sinensis HOM05D004623 ORTHO05D005100 2.5e-135 486.1 379 74.7
DCAR_006543 Daucus carota HOM05D004623 ORTHO05D005100 1.2e-134 483.8 378 73.8
QL02p028195 Quercus lobata HOM05D004623 ORTHO05D005100 1.6e-134 483.4 380 76.3
Haze_09171 Corylus avellana HOM05D004623 ORTHO05D005100 2.1e-134 483.0 390 71.0
Lj2A157G52 Lonicera japonica HOM05D004623 ORTHO05D005100 2.1e-134 483.0 381 75.9
Potri.003G146200 Populus trichocarpa HOM05D004623 ORTHO05D005100 3.5e-134 482.3 381 74.5
CsaV3_3G000890 Cucumis sativus L. HOM05D004623 ORTHO05D005100 1.0e-133 480.7 382 74.3
CiPaw.11G112800 Carya illinoinensis HOM05D004623 ORTHO05D005100 5.1e-133 478.4 376 75.5
COL.COLO4_10792 Corchorus olitorius HOM05D004623 ORTHO05D005100 5.1e-133 478.4 381 73.5
SEGI_26605 Sequoiadendron giganteum HOM05D004623 ORTHO05D005100 5.1e-133 478.4 385 74.3
MSTRG.13716 Avicennia marina HOM05D004623 ORTHO05D005100 1.5e-132 476.9 381 73.0
Migut.E00632 Erythranthe guttata HOM05D004623 ORTHO05D005100 3.3e-132 475.7 378 74.3
TWI15G0843 Tripterygium wilfordii HOM05D004623 ORTHO05D005100 4.3e-132 475.3 381 73.5
Gohir.D08G123000 Gossypium hirsutum HOM05D004623 ORTHO05D005100 5.6e-132 474.9 381 74.0
Gohir.A08G110100 Gossypium hirsutum HOM05D004623 ORTHO05D005100 4.8e-131 471.9 381 73.5
Gohir.A09G188600 Gossypium hirsutum HOM05D004623 ORTHO05D005100 4.8e-131 471.9 381 71.9
Gohir.D09G183500 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.4e-130 470.3 381 71.9
Nitab4.5_0004251g0030 Nicotiana tabacum HOM05D004623 ORTHO05D005100 1.4e-130 470.3 381 73.8
Nitab4.5_0007063g0040 Nicotiana tabacum HOM05D004623 ORTHO05D005100 6.9e-130 468.0 379 73.6
vmacro11504 Vaccinium macrocarpon HOM05D004623 ORTHO05D005100 9.0e-130 467.6 385 66.0
BcaB06g27683 Brassica carinata HOM05D004623 ORTHO05D005100 2.6e-129 466.1 382 69.9
CAN.G567.85 Capsicum annuum HOM05D004623 ORTHO05D005100 4.5e-129 465.3 381 73.0
Solyc08g083070.3 Solanum lycopersicum HOM05D004623 ORTHO05D005100 1.0e-128 464.2 381 73.5
Sopen08g031290 Solanum pennellii HOM05D004623 ORTHO05D005100 1.0e-128 464.2 381 73.5
Os10g0518300 Oryza sativa ssp. japonica HOM05D004623 ORTHO05D005100 1.3e-128 463.8 383 72.8
Sp7g00180 Schrenkiella parvula HOM05D004623 ORTHO05D005100 4.9e-128 461.8 382 69.1
Cpa.g.sc175.24 Carica papaya HOM05D004623 ORTHO05D005100 6.5e-128 461.5 381 72.4
AT5G41950 Arabidopsis thaliana HOM05D004623 ORTHO05D005100 8.4e-128 461.1 382 68.6
Duzib205G1161 Durio zibethinus HOM05D004623 ORTHO05D005100 1.1e-127 460.7 394 63.5
HanXRQChr03g0086131 Helianthus annuus HOM05D004623 ORTHO05D005100 7.1e-127 458.0 381 71.7
THA.LOC104823625 Tarenaya hassleriana HOM05D004623 ORTHO05D005100 1.6e-126 456.8 381 69.8
Thhalv10027708m.g Eutrema salsugineum HOM05D004623 ORTHO05D005100 2.1e-126 456.4 382 69.1
CARHR212610 Cardamine hirsuta HOM05D004623 ORTHO05D005100 2.3e-125 453.0 382 68.6
unitig_62.g23647 Utricularia gibba HOM05D004623 ORTHO05D005100 3.9e-125 452.2 381 71.4
Gorai.006G205900 Gossypium raimondii HOM05D004623 ORTHO05D005100 5.1e-125 451.8 379 69.9
EL10Ac5g12433 Beta vulgaris HOM05D004623 ORTHO05D005100 8.7e-125 451.1 381 71.1
AL7G47270 Arabidopsis lyrata HOM05D004623 ORTHO05D005100 1.9e-124 449.9 382 68.6
BcaC02g08901 Brassica carinata HOM05D004623 ORTHO05D005100 1.9e-124 449.9 382 68.1
BolC4t26520H Brassica oleracea HOM05D004623 ORTHO05D005100 1.9e-124 449.9 382 68.1
Carub.0007s3343 Capsella rubella HOM05D004623 ORTHO05D005100 7.4e-124 448.0 382 67.0
Sc22g0004710 Simmondsia chinensis HOM05D004623 ORTHO05D005100 3.7e-123 445.7 381 70.6
C04p49340 Brassica napus HOM05D003273 ORTHO05D005100 4.8e-123 445.3 377 68.2
A04p15110 Brassica napus HOM05D003273 ORTHO05D005100 1.4e-122 443.7 377 67.9
BraA04t17152Z Brassica rapa HOM05D003273 ORTHO05D005100 1.4e-122 443.7 377 67.9
Zm00001eb043430 Zea mays HOM05D004623 ORTHO05D005100 1.4e-122 443.7 352 75.6
Sabra03G0106400 Salix brachista HOM05D004623 ORTHO05D005100 1.2e-121 440.7 416 66.1
Gohir.D03G085500 Gossypium hirsutum HOM05D004623 ORTHO05D005100 2.5e-119 433.0 378 69.3
Gohir.A02G098100 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.6e-118 430.3 378 69.0
Lsat_1_v5_gn_3_14141 Lactuca sativa HOM05D004623 ORTHO05D005100 2.7e-118 429.5 381 69.0
ECA246G3914 Erigeron canadensis HOM05D004623 ORTHO05D005100 6.7e-117 424.9 381 68.0
Gorai.003G076800 Gossypium raimondii HOM05D004623 ORTHO05D005100 1.5e-116 423.7 395 66.3
AUR62019914 Chenopodium quinoa HOM05D004623 ORTHO05D005100 3.3e-116 422.5 381 68.8
Lalb_Chr02g0149581 Lupinus albus HOM05D004623 ORTHO05D005100 8.2e-115 417.9 381 68.0
Oeu041377.1 Olea europaea HOM05D004623 ORTHO05D005100 2.2e-112 409.8 450 59.1
Mapoly0068s0096 Marchantia polymorpha HOM05D004623 ORTHO05D005100 2.0e-108 396.7 389 59.6
Manes.01G051700 Manihot esculenta HOM05D004623 ORTHO05D005100 4.4e-108 395.6 381 68.2
Duzib068G0531 Durio zibethinus HOM05D004623 ORTHO05D005100 4.8e-107 392.1 381 64.6
ECA240G2146 Erigeron canadensis HOM05D004623 ORTHO05D005100 7.7e-105 384.8 368 65.8
Lsat_1_v5_gn_6_82240 Lactuca sativa HOM05D004623 ORTHO05D005100 1.1e-103 380.9 368 66.0
Peaxi162Scf00074g00026 Petunia axillaris HOM05D004623 ORTHO05D005100 2.3e-101 373.2 429 52.9
Actinidia22205 Actinidia chinensis HOM05D004623 ORTHO05D005100 6.3e-99 365.2 298 74.2
Manes.02G003100 Manihot esculenta HOM05D004623 ORTHO05D005100 4.5e-97 359.0 282 78.0
HanXRQChr06g0166801 Helianthus annuus HOM05D004623 ORTHO05D005100 2.9e-96 356.3 344 63.4
AagrBONN_evm.TU.Sc2ySwM_344.2453 Anthoceros agrestis HOM05D004623 ORTHO05D005100 5.0e-96 355.5 391 55.0
SMO134G0154 Selaginella moellendorffii HOM05D004623 ORTHO05D005100 1.6e-94 350.5 279 63.8
HPP92_007396 Vanilla planifolia HOM05D004623 ORTHO05D005100 8.0e-94 348.2 329 55.3
TWI15G1120 Tripterygium wilfordii HOM05D004623 ORTHO05D005100 2.6e-92 343.2 263 71.5
HanXRQChr17g0534721 Helianthus annuus HOM05D004623 ORTHO05D005100 5.3e-90 335.5 344 64.5
MBI12_g13717_MAGBIO Magnolia biondii HOM05D004623 ORTHO05D005100 1.1e-87 327.8 600 40.5
Pp3c1_15130 Physcomitrium patens HOM05D004623 ORTHO05D005100 8.8e-85 318.2 386 51.8
Migut.E00624 Erythranthe guttata HOM05D004623 ORTHO05D005100 9.5e-79 298.1 250 76.4
Pp3c2_21950 Physcomitrium patens HOM05D004623 ORTHO05D005100 4.0e-77 292.7 395 42.5
CBR_g24226 Chara braunii HOM05D004623 ORTHO05D005100 7.0e-74 282.0 474 41.4
BolC6t37215H Brassica oleracea HOM05D004623 ORTHO05D005100 2.0e-73 280.4 263 58.9
Oeu013386.1 Olea europaea HOM05D004623 ORTHO05D005100 1.0e-69 268.1 270 67.0
HanXRQChr05g0133491 Helianthus annuus HOM05D004623 ORTHO05D005100 9.2e-50 201.8 131 78.6
Gorai.001G213600 Gossypium raimondii HOM05D004623 ORTHO05D005100 1.0e-48 198.4 152 62.5
Gohir.D05G097100 Gossypium hirsutum HOM05D004623 ORTHO05D005100 5.2e-45 186.0 141 61.7
Gohir.A06G102600 Gossypium hirsutum HOM05D004623 ORTHO05D005100 6.8e-45 185.7 141 61.7
Gorai.003G053400 Gossypium raimondii HOM05D004623 ORTHO05D005100 6.8e-45 185.7 141 61.7
C06p20370 Brassica napus HOM05D004623 ORTHO05D005100 8.9e-45 185.3 182 54.4
Gorai.002G111300 Gossypium raimondii HOM05D004623 ORTHO05D005100 1.1e-39 168.3 134 60.4
Gohir.D01G085875 Gossypium hirsutum HOM05D004623 ORTHO05D005100 2.5e-39 167.2 134 59.0
Gohir.D08G109908 Gossypium hirsutum HOM05D004623 ORTHO05D005100 7.3e-39 165.6 168 51.8
SEGI_12617 Sequoiadendron giganteum HOM05D004623 ORTHO05D005100 4.9e-35 152.9 95 83.2
MCO14G177 Micromonas commoda HOM05D004623 ORTHO05D005100 4.2e-34 149.8 461 29.1
Gohir.D07G097001 Gossypium hirsutum HOM05D004623 ORTHO05D005100 3.5e-33 146.7 128 57.8
Gohir.D03G136750 Gossypium hirsutum HOM05D004623 ORTHO05D005100 2.3e-32 144.1 171 46.8
SEGI_10381 Sequoiadendron giganteum HOM05D004623 ORTHO05D005100 6.2e-30 136.0 106 64.2
Gohir.D04G089675 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.9e-23 114.4 73 69.9
BcaC08g44571 Brassica carinata HOM05D004623 ORTHO05D005100 5.6e-23 112.8 81 63.0
Lsat_1_v5_gn_1_84960 Lactuca sativa HOM05D004623 ORTHO05D005100 8.1e-22 109.0 67 80.6
Cre09.g387550 Chlamydomonas reinhardtii HOM05D004623 ORTHO05D005100 1.5e-20 104.8 311 28.3
Lsat_1_v5_gn_3_125120 Lactuca sativa HOM05D004623 ORTHO05D005100 8.4e-19 99.0 121 50.4
TPR.G39353 Trifolium pratense HOM05D004623 ORTHO05D005100 1.6e-17 94.7 50 90.0
Glyma.02G157002 Glycine max HOM05D000518 ORTHO05D005100 6.0e-17 92.8 55 78.2
Lsat_1_v5_gn_7_15681 Lactuca sativa HOM05D004269 ORTHO05D007106 1.7e-11 74.7 122 42.6
Actinidia15203 Actinidia chinensis HOM05D004623 ORTHO05D005100 5.0e-11 73.2 71 60.6
Actinidia19830 Actinidia chinensis HOM05D004623 ORTHO05D005100 2.5e-10 70.9 52 73.1
MD08G1234800 Malus domestica HOM05D008315 ORTHO05D009452 4.6e-09 66.6 57 63.2
Lsat_1_v5_gn_9_31241 Lactuca sativa HOM05D000436 ORTHO05D000678 4.8e-06 56.6 35 65.7


User provided reference genes

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