Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0620G086 Amborella trichopoda HOM05D004525 ORTHO05D005295 1.7e-91 339.3 176 100.0
Nn3g18812 Nelumbo nucifera HOM05D004525 ORTHO05D005295 9.1e-69 263.8 178 78.1
TAR629G2664 Trochodendron aralioides HOM05D004525 ORTHO05D005295 2.0e-68 262.7 179 77.1
MBI04_g25309_MAGBIO Magnolia biondii HOM05D004525 ORTHO05D005295 1.3e-67 260.0 181 76.8
Aqoxy3G00526 Aquilegia oxysepala HOM05D004525 ORTHO05D005295 1.7e-67 259.6 179 76.5
Aqoxy5G04330 Aquilegia oxysepala HOM05D004525 ORTHO05D005295 1.7e-67 259.6 179 76.5
Duzib068G1021 Durio zibethinus HOM05D004525 ORTHO05D005295 1.0e-64 250.4 166 75.9
Gorai.008G258800 Gossypium raimondii HOM05D004525 ORTHO05D005295 6.8e-64 247.7 166 74.1
GSVIVG01019654001 Vitis vinifera HOM05D004525 ORTHO05D005295 8.8e-64 247.3 168 74.4
CSS0029651 Camellia sinensis var. sinensis HOM05D004525 ORTHO05D005295 1.2e-63 246.9 171 74.9
CSS0049671 Camellia sinensis var. sinensis HOM05D004525 ORTHO05D005295 2.0e-63 246.1 171 74.9
Duzib205G1187 Durio zibethinus HOM05D004525 ORTHO05D005295 2.0e-63 246.1 166 73.5
Gohir.D12G241500 Gossypium hirsutum HOM05D004525 ORTHO05D005295 2.0e-63 246.1 166 73.5
Hma1.2p1_0456F.1_g156630 Hydrangea macrophylla HOM05D004525 ORTHO05D005295 2.6e-63 245.7 155 79.4
QL12p036922 Quercus lobata HOM05D004525 ORTHO05D005295 3.4e-63 245.4 156 78.8
CSS0036474 Camellia sinensis var. sinensis HOM05D004525 ORTHO05D005295 5.7e-63 244.6 171 74.3
Gohir.A12G240200 Gossypium hirsutum HOM05D004525 ORTHO05D005295 5.7e-63 244.6 166 73.5
Thecc.03G220900 Theobroma cacao HOM05D004525 ORTHO05D005295 5.7e-63 244.6 168 72.6
Cc08_g16770 Coffea canephora HOM05D004525 ORTHO05D005295 9.8e-63 243.8 156 76.9
FAN07G0034 Fragaria x ananassa HOM05D004525 ORTHO05D005295 9.8e-63 243.8 169 74.6
PSO017G1681 Papaver somniferum HOM05D004525 ORTHO05D005295 9.8e-63 243.8 158 75.9
Dinv38179 Davidia involucrata HOM05D004525 ORTHO05D005295 1.3e-62 243.4 159 77.4
EL10Ac5g12425 Beta vulgaris HOM05D004525 ORTHO05D005295 1.7e-62 243.0 160 75.0
COL.COLO4_10799 Corchorus olitorius HOM05D004525 ORTHO05D005295 1.7e-62 243.0 170 71.8
QL02p027997 Quercus lobata HOM05D004525 ORTHO05D005295 1.7e-62 243.0 168 73.8
Actinidia22207 Actinidia chinensis HOM05D004525 ORTHO05D005295 2.2e-62 242.7 173 71.7
FvH4_4g11450 Fragaria vesca HOM05D004525 ORTHO05D005295 2.2e-62 242.7 169 74.0
Sabra01G0060700 Salix brachista HOM05D004525 ORTHO05D005295 2.2e-62 242.7 161 75.8
MD06G1119500 Malus domestica HOM05D004525 ORTHO05D005295 3.7e-62 241.9 169 73.4
Manes.09G101000 Manihot esculenta HOM05D004525 ORTHO05D005295 3.7e-62 241.9 169 72.2
Sc01g0010720 Simmondsia chinensis HOM05D004525 ORTHO05D005295 3.7e-62 241.9 168 72.0
RcHm_v2.0_Chr1g0332661 Rosa chinensis HOM05D004525 ORTHO05D005295 4.9e-62 241.5 161 77.0
BcaC06g35131 Brassica carinata HOM05D004525 ORTHO05D005295 6.3e-62 241.1 165 71.5
C07p19480 Brassica napus HOM05D001252 ORTHO05D005295 6.3e-62 241.1 165 71.5
Potri.001G083801 Populus trichocarpa HOM05D004525 ORTHO05D005295 6.3e-62 241.1 159 76.1
SGA_v2.0_scaffold14G07039 Striga asiatica HOM05D004525 ORTHO05D005295 6.3e-62 241.1 168 74.4
SGA_v2.0_scaffold36G14274 Striga asiatica HOM05D004525 ORTHO05D005295 6.3e-62 241.1 168 74.4
Prupe.2G307200 Prunus persica HOM05D004525 ORTHO05D005295 8.3e-62 240.7 169 74.6
Zm00001eb103320 Zea mays HOM05D004525 ORTHO05D005295 8.3e-62 240.7 165 74.5
Atru.chr9.1879 Acer truncatum HOM05D004525 ORTHO05D005295 1.1e-61 240.4 170 71.2
Ciclev10022441m.g Citrus clementina HOM05D004525 ORTHO05D005295 1.1e-61 240.4 172 70.9
CiPaw.11G112000 Carya illinoinensis HOM05D004525 ORTHO05D005295 1.4e-61 240.0 159 75.5
MD14G1136300 Malus domestica HOM05D004525 ORTHO05D005295 1.8e-61 239.6 169 73.4
PSO478G2085 Papaver somniferum HOM05D004525 ORTHO05D005295 3.1e-61 238.8 158 74.7
A07p13030 Brassica napus HOM05D001252 ORTHO05D005295 4.1e-61 238.4 165 70.9
RcHm_v2.0_Chr6g0273561 Rosa chinensis HOM05D004525 ORTHO05D005295 4.1e-61 238.4 161 75.8
Solyc08g065160.3 Solanum lycopersicum HOM05D004525 ORTHO05D005295 4.1e-61 238.4 160 74.4
Sopen08g018760 Solanum pennellii HOM05D004525 ORTHO05D005295 4.1e-61 238.4 160 74.4
PGSC0003DMG400029951 Solanum tuberosum HOM05D004525 ORTHO05D005295 4.1e-61 238.4 160 74.4
BcaB03g14082 Brassica carinata HOM05D004525 ORTHO05D005295 5.4e-61 238.0 165 70.9
CARHR212640 Cardamine hirsuta HOM05D004525 ORTHO05D005295 5.4e-61 238.0 175 70.9
Nitab4.5_0001367g0040 Nicotiana tabacum HOM05D004525 ORTHO05D005295 5.4e-61 238.0 168 71.4
AL1G39060 Arabidopsis lyrata HOM05D004525 ORTHO05D005295 7.0e-61 237.7 165 70.9
FAN22G0758 Fragaria x ananassa HOM05D004525 ORTHO05D005295 7.0e-61 237.7 172 73.3
Thhalv10008848m.g Eutrema salsugineum HOM05D004525 ORTHO05D005295 9.2e-61 237.3 156 75.0
Lsat_1_v5_gn_3_14420 Lactuca sativa HOM05D004525 ORTHO05D005295 9.2e-61 237.3 170 69.4
Zm00001eb319380 Zea mays HOM05D004525 ORTHO05D005295 9.2e-61 237.3 165 74.5
Ca_02991_v3 Cicer arietinum L. HOM05D004525 ORTHO05D005295 1.2e-60 236.9 168 70.8
HanXRQChr17g0534221 Helianthus annuus HOM05D004525 ORTHO05D005295 1.2e-60 236.9 175 69.7
Hund11348 Selenicereus undatus HOM05D004525 ORTHO05D005295 2.0e-60 236.1 159 73.0
CsaV3_3G000870 Cucumis sativus L. HOM05D004525 ORTHO05D005295 2.7e-60 235.7 159 74.8
Migut.E00628 Erythranthe guttata HOM05D004525 ORTHO05D005295 2.7e-60 235.7 168 72.6
TWI56G0194 Tripterygium wilfordii HOM05D004525 ORTHO05D005295 2.7e-60 235.7 159 73.0
Cpa.g.sc27.182 Carica papaya HOM05D004525 ORTHO05D005295 3.5e-60 235.3 170 69.4
Ca_17957_v3 Cicer arietinum L. HOM05D004525 ORTHO05D005295 3.5e-60 235.3 168 70.2
ClCG10G000810 Citrullus lanatus HOM05D004525 ORTHO05D005295 3.5e-60 235.3 168 70.8
Haze_04010 Corylus avellana HOM05D004525 ORTHO05D005295 3.5e-60 235.3 155 76.8
Psat7g073160 Pisum sativum HOM05D004525 ORTHO05D005295 3.5e-60 235.3 172 69.8
Prupe.5G130000 Prunus persica HOM05D004525 ORTHO05D005295 4.5e-60 235.0 166 72.3
AT1G26665 Arabidopsis thaliana HOM05D004525 ORTHO05D005295 5.9e-60 234.6 159 73.0
BraA07t29074Z Brassica rapa HOM05D001252 ORTHO05D005295 5.9e-60 234.6 165 69.7
Cfa011920 Carpinus fangiana HOM05D004525 ORTHO05D005295 5.9e-60 234.6 156 76.3
ECA246G3328 Erigeron canadensis HOM05D004525 ORTHO05D005295 5.9e-60 234.6 156 74.4
Nitab4.5_0012632g0010 Nicotiana tabacum HOM05D004525 ORTHO05D005295 5.9e-60 234.6 168 70.8
Potri.003G146900 Populus trichocarpa HOM05D004525 ORTHO05D005295 5.9e-60 234.6 158 74.7
Cfa006748 Carpinus fangiana HOM05D004525 ORTHO05D005295 1.0e-59 233.8 155 76.1
Sp1g22150 Schrenkiella parvula HOM05D004525 ORTHO05D005295 1.0e-59 233.8 173 68.2
THA.LOC104809303 Tarenaya hassleriana HOM05D004525 ORTHO05D005295 1.0e-59 233.8 166 69.9
Sabra03G0106900 Salix brachista HOM05D004525 ORTHO05D005295 1.3e-59 233.4 157 73.2
CiPaw.12G077100 Carya illinoinensis HOM05D004525 ORTHO05D005295 2.3e-59 232.6 173 69.9
AUR62007057 Chenopodium quinoa HOM05D004525 ORTHO05D005295 2.3e-59 232.6 171 67.3
unitig_744.g24303 Utricularia gibba HOM05D004525 ORTHO05D005295 2.3e-59 232.6 173 67.1
HPP92_025871 Vanilla planifolia HOM05D004525 ORTHO05D005295 2.3e-59 232.6 177 67.2
Os09g0528300 Oryza sativa ssp. japonica HOM05D004525 ORTHO05D005295 2.9e-59 232.3 159 73.6
PGR031G2275 Punica granatum HOM05D004525 ORTHO05D005295 2.9e-59 232.3 170 69.4
SalBow6G4763 Salvia bowleyana HOM05D004525 ORTHO05D005295 5.0e-59 231.5 168 70.8
TWI36G0523 Tripterygium wilfordii HOM05D004525 ORTHO05D005295 5.0e-59 231.5 157 73.2
Sed0024458 Sechium edule HOM05D004525 ORTHO05D005295 6.6e-59 231.1 170 69.4
Glyma.08G296500 Glycine max HOM05D004525 ORTHO05D005295 8.6e-59 230.7 165 69.7
Phvul.003G069600 Phaseolus vulgaris HOM05D004525 ORTHO05D005295 5.6e-58 228.0 158 71.5
Aa31LG9G260 Aethionema arabicum HOM05D004525 ORTHO05D005295 1.2e-57 226.9 159 71.1
Glyma.18G125700 Glycine max HOM05D004525 ORTHO05D005295 2.8e-57 225.7 165 69.7
Lalb_Chr12g0205381 Lupinus albus HOM05D004525 ORTHO05D005295 2.8e-57 225.7 172 66.9
DCAR_011870 Daucus carota HOM05D004525 ORTHO05D005295 3.6e-57 225.3 167 67.7
Medtr8g085570 Medicago truncatula HOM05D004525 ORTHO05D005295 3.6e-57 225.3 165 67.9
vmacro11499 Vaccinium macrocarpon HOM05D004525 ORTHO05D005295 3.6e-57 225.3 169 69.2
Lalb_Chr13g0294931 Lupinus albus HOM05D004525 ORTHO05D005295 4.7e-57 224.9 172 66.9
AL7G47302 Arabidopsis lyrata HOM05D004525 ORTHO05D005295 6.1e-57 224.6 176 68.8
DCAR_006547 Daucus carota HOM05D004525 ORTHO05D005295 6.1e-57 224.6 170 67.6
Eucgr.C04229 Eucalyptus grandis HOM05D004525 ORTHO05D005295 8.0e-57 224.2 158 70.3
CDE07G1557 Ceratophyllum demersum HOM05D004525 ORTHO05D005295 1.4e-56 223.4 173 68.2
CARHR025300 Cardamine hirsuta HOM05D004525 ORTHO05D005295 6.8e-56 221.1 173 66.5
VMungo0251G0643 Vigna mungo HOM05D004525 ORTHO05D005295 8.9e-56 220.7 156 71.2
Lj8A200T57 Lonicera japonica HOM05D004525 ORTHO05D005295 1.2e-55 220.3 151 72.8
Ah.12g053230 Amaranthus hybridus HOM05D004525 ORTHO05D005295 2.6e-55 219.2 160 66.9
AT5G41910 Arabidopsis thaliana HOM05D004525 ORTHO05D005295 2.6e-55 219.2 171 67.3
MSTRG.12201 Avicennia marina HOM05D004525 ORTHO05D005295 3.4e-55 218.8 168 67.3
CANSAT56G2042 Cannabis sativa HOM05D004525 ORTHO05D005295 9.8e-55 217.2 183 61.7
Rhsim07G0078000 Rhododendron simsii HOM05D004525 ORTHO05D005295 9.8e-55 217.2 156 68.6
MSTRG.24865 Avicennia marina HOM05D004525 ORTHO05D005295 1.7e-54 216.5 170 65.3
Lj4g0018067 Lotus japonicus HOM05D004525 ORTHO05D005295 3.7e-54 215.3 168 63.7
Carub.0001s2436 Capsella rubella HOM05D004525 ORTHO05D005295 8.3e-54 214.2 159 65.4
unitig_21.g20890 Utricularia gibba HOM05D004525 ORTHO05D005295 8.3e-54 214.2 176 63.1
TPR.G15828 Trifolium pratense HOM05D004525 ORTHO05D005295 1.8e-53 213.0 168 66.7
BraA09t39504Z Brassica rapa HOM05D004525 ORTHO05D005295 3.5e-52 208.8 164 65.2
BolC7t42467H Brassica oleracea HOM05D001252 ORTHO05D001661 4.6e-52 208.4 143 71.3
Haze_09177 Corylus avellana HOM05D004525 ORTHO05D005295 1.0e-51 207.2 143 72.7
vmacro13851 Vaccinium macrocarpon HOM05D004525 ORTHO05D005295 1.3e-51 206.8 172 65.7
TPR.G11962 Trifolium pratense HOM05D004525 ORTHO05D005295 1.2e-49 200.3 168 64.3
Atru.chr3.1913 Acer truncatum HOM05D004525 ORTHO05D005295 3.6e-49 198.7 157 63.7
Psat7g073280 Pisum sativum HOM05D004525 ORTHO05D005295 6.2e-49 198.0 148 67.6
Peaxi162Scf01444g00013 Petunia axillaris HOM05D004525 ORTHO05D005295 3.1e-48 195.7 170 62.9
Oeu022035.1 Olea europaea HOM05D004525 ORTHO05D005295 4.4e-47 191.8 229 49.8
C05p24330 Brassica napus HOM05D004525 ORTHO05D005295 1.3e-46 190.3 151 66.9
FAN17G2704 Fragaria x ananassa HOM05D004525 ORTHO05D005295 3.7e-46 188.7 172 62.8
Lj4g0019040 Lotus japonicus HOM05D004525 ORTHO05D005295 4.9e-46 188.3 132 71.2
Psat7g072880 Pisum sativum HOM05D004525 ORTHO05D005295 6.4e-46 188.0 159 59.7
FAN08G2166 Fragaria x ananassa HOM05D000319 ORTHO05D035382 4.1e-45 185.3 129 69.8
Psat7g074000 Pisum sativum HOM05D004525 ORTHO05D005295 2.7e-44 182.6 132 67.4
TAR375G0036 Trochodendron aralioides HOM05D004525 ORTHO05D005295 1.9e-42 176.4 106 82.1
arahy.Tifrunner.gnm1.ann1.DJD4V2 Arachis hypogaea HOM05D004525 ORTHO05D005295 3.3e-42 175.6 158 60.1
arahy.Tifrunner.gnm1.ann1.0LH6ZS Arachis hypogaea HOM05D004525 ORTHO05D005295 4.3e-42 175.3 158 60.1
Mapoly0151s0039 Marchantia polymorpha HOM05D004525 ORTHO05D005295 7.3e-42 174.5 169 54.4
AUR62019920 Chenopodium quinoa HOM05D004525 ORTHO05D005295 5.2e-40 168.3 108 73.1
MELO3C013773.2 Cucumis melo HOM05D004525 ORTHO05D005295 8.9e-40 167.5 211 49.8
Peaxi162Scf00640g00032 Petunia axillaris HOM05D004525 ORTHO05D005295 4.4e-39 165.2 132 64.4
Pp3c11_16910 Physcomitrium patens HOM05D004525 ORTHO05D005295 1.6e-36 156.8 150 50.0
FvH4_5g19692 Fragaria vesca HOM05D004525 ORTHO05D005295 2.1e-36 156.4 110 69.1
SMO301G0053 Selaginella moellendorffii HOM05D004525 ORTHO05D005295 3.5e-36 155.6 160 51.9
Nitab4.5_0017193g0030 Nicotiana tabacum HOM05D004525 ORTHO05D005295 1.3e-35 153.7 157 54.1
SEGI_32557 Sequoiadendron giganteum HOM05D004525 ORTHO05D005295 5.1e-35 151.8 173 49.1
Actinidia27285 Actinidia chinensis HOM05D004525 ORTHO05D005295 1.9e-34 149.8 158 53.2
Cfa007058 Carpinus fangiana HOM05D004525 ORTHO05D005295 7.3e-34 147.9 101 73.3
PGSC0003DMG400040735 Solanum tuberosum HOM05D004525 ORTHO05D005295 1.2e-33 147.1 128 62.5
PGSC0003DMG400043501 Solanum tuberosum HOM05D004525 ORTHO05D005295 2.8e-33 146.0 130 60.8
PGSC0003DMG400008601 Solanum tuberosum HOM05D004525 ORTHO05D005295 3.6e-33 145.6 130 60.8
AagrBONN_evm.TU.Sc2ySwM_117.1849 Anthoceros agrestis HOM05D004525 ORTHO05D005295 2.4e-32 142.9 162 42.6
PGSC0003DMG400039131 Solanum tuberosum HOM05D004525 ORTHO05D005295 3.1e-32 142.5 129 57.4
PGSC0003DMG400017120 Solanum tuberosum HOM05D004525 ORTHO05D005295 8.9e-32 141.0 130 60.8
BcaC05g26400 Brassica carinata HOM05D004525 ORTHO05D005295 1.5e-31 140.2 91 69.2
AagrBONN_evm.TU.Sc2ySwM_368.381 Anthoceros agrestis HOM05D004525 ORTHO05D005295 4.4e-31 138.7 157 42.0
CAN.G6.3 Capsicum annuum HOM05D004525 ORTHO05D005295 9.9e-31 137.5 82 78.0
A09p40080 Brassica napus HOM05D004525 ORTHO05D005295 2.9e-30 136.0 111 63.1
Nitab4.5_0002724g0080 Nicotiana tabacum HOM05D004525 ORTHO05D005295 3.0e-19 99.4 98 57.1
RcHm_v2.0_Chr7g0187021 Rosa chinensis HOM05D004525 ORTHO05D005295 5.6e-18 95.1 165 38.8
CAN.G1631.10 Capsicum annuum HOM05D004525 ORTHO05D005295 3.4e-15 85.9 88 54.5
RcHm_v2.0_Chr5g0055281 Rosa chinensis HOM05D004525 ORTHO05D005295 2.4e-13 79.7 58 65.5
TAR374G0495 Trochodendron aralioides HOM05D004525 ORTHO05D005295 2.7e-12 76.3 101 49.5
BcaB05g21931 Brassica carinata HOM05D004525 ORTHO05D005295 1.3e-09 67.4 52 71.2
SGA_v2.0_scaffold104G30259 Striga asiatica HOM05D004525 ORTHO05D005295 2.6e-07 59.7 129 37.2


User provided reference genes

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