Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0620G024 Amborella trichopoda HOM05D003313 ORTHO05D004217 4.6e-47 191.4 142 100.0
ATR0620G123 Amborella trichopoda HOM05D003313 ORTHO05D004217 4.6e-47 191.4 142 99.3
TAR624G0023 Trochodendron aralioides HOM05D003313 ORTHO05D004217 2.3e-17 92.8 85 69.4
TAR624G1107 Trochodendron aralioides HOM05D003313 ORTHO05D004217 2.3e-17 92.8 85 69.4
Gohir.D08G091400 Gossypium hirsutum HOM05D003313 ORTHO05D004217 1.0e-14 84.0 100 56.0
FvH4_2g17560 Fragaria vesca HOM05D003313 ORTHO05D004217 1.4e-14 83.6 104 54.8
FAN15G1274 Fragaria x ananassa HOM05D003313 ORTHO05D004217 1.4e-14 83.6 104 54.8
FAN27G0645 Fragaria x ananassa HOM05D003313 ORTHO05D004217 1.4e-14 83.6 104 54.8
FAN27G0740 Fragaria x ananassa HOM05D003313 ORTHO05D004217 1.4e-14 83.6 104 54.8
FAN24G1237 Fragaria x ananassa HOM05D003313 ORTHO05D004217 2.3e-14 82.8 104 53.8
GSVIVG01029823001 Vitis vinifera HOM05D003313 ORTHO05D004217 2.3e-14 82.8 104 57.7
Gohir.A08G082000 Gossypium hirsutum HOM05D003313 ORTHO05D004217 3.0e-14 82.4 102 56.9
Gorai.004G096900 Gossypium raimondii HOM05D003313 ORTHO05D004217 3.0e-14 82.4 102 56.9
MBI07_g10943_MAGBIO Magnolia biondii HOM05D003313 ORTHO05D004217 3.0e-14 82.4 95 60.0
ClCG09G008380 Citrullus lanatus HOM05D003313 ORTHO05D004217 4.0e-14 82.0 105 55.2
RcHm_v2.0_Chr6g0282501 Rosa chinensis HOM05D003313 ORTHO05D004217 8.9e-14 80.9 104 53.8
Sabra06G0061800 Salix brachista HOM05D003313 ORTHO05D004217 8.9e-14 80.9 91 62.6
Ciclev10018511m.g Citrus clementina HOM05D003313 ORTHO05D004217 1.2e-13 80.5 84 64.3
MD05G1154700 Malus domestica HOM05D003313 ORTHO05D004217 1.2e-13 80.5 104 53.8
Sed0021054 Sechium edule HOM05D003313 ORTHO05D004217 1.5e-13 80.1 106 54.7
CsaV3_7G026710 Cucumis sativus L. HOM05D003313 ORTHO05D004217 2.0e-13 79.7 103 55.3
Potri.006G081800 Populus trichocarpa HOM05D003313 ORTHO05D004217 2.0e-13 79.7 91 61.5
Atru.chr3.2031 Acer truncatum HOM05D003313 ORTHO05D004217 3.4e-13 79.0 100 55.0
Cpa.g.sc17.15 Carica papaya HOM05D003313 ORTHO05D004217 3.4e-13 79.0 89 57.3
MELO3C021123.2 Cucumis melo HOM05D003313 ORTHO05D004217 3.4e-13 79.0 105 53.3
QL11p018449 Quercus lobata HOM05D003313 ORTHO05D004217 3.4e-13 79.0 94 57.4
Aqoxy1G01346 Aquilegia oxysepala HOM05D003313 ORTHO05D004217 4.4e-13 78.6 100 57.0
Lj5C312G5 Lonicera japonica HOM05D003313 ORTHO05D004217 4.4e-13 78.6 97 54.6
COL.COLO4_07112 Corchorus olitorius HOM05D003313 ORTHO05D004217 5.7e-13 78.2 94 58.5
Dinv30970 Davidia involucrata HOM05D003313 ORTHO05D004217 5.7e-13 78.2 100 55.0
Manes.11G105500 Manihot esculenta HOM05D003313 ORTHO05D004217 7.5e-13 77.8 85 58.8
Eucgr.B01361 Eucalyptus grandis HOM05D003313 ORTHO05D004217 9.8e-13 77.4 108 52.8
Rhsim11G0111700 Rhododendron simsii HOM05D003313 ORTHO05D004217 9.8e-13 77.4 105 55.2
Thecc.09G202800 Theobroma cacao HOM05D003313 ORTHO05D004217 9.8e-13 77.4 98 55.1
Nn3g20244 Nelumbo nucifera HOM05D003313 ORTHO05D004217 1.3e-12 77.0 96 56.2
Duzib150G0949 Durio zibethinus HOM05D003313 ORTHO05D004217 3.7e-12 75.5 93 57.0
Prupe.8G187800 Prunus persica HOM05D003313 ORTHO05D004217 3.7e-12 75.5 105 53.3
Haze_14998 Corylus avellana HOM05D003313 ORTHO05D004217 6.3e-12 74.7 100 54.0
CANSAT01G1610 Cannabis sativa HOM05D003313 ORTHO05D004217 8.3e-12 74.3 104 51.0
Lj1g0026129 Lotus japonicus HOM05D003313 ORTHO05D004217 8.3e-12 74.3 100 53.0
TPR.G8371 Trifolium pratense HOM05D003313 ORTHO05D004217 1.1e-11 73.9 100 52.0
Lj9C240T5 Lonicera japonica HOM05D003313 ORTHO05D004217 1.8e-11 73.2 88 54.5
Lalb_Chr15g0077831 Lupinus albus HOM05D003313 ORTHO05D004217 3.1e-11 72.4 102 52.9
vmacro01644 Vaccinium macrocarpon HOM05D003313 ORTHO05D004217 3.1e-11 72.4 96 57.3
Cfa004406 Carpinus fangiana HOM05D003313 ORTHO05D004217 5.4e-11 71.6 102 52.9
CiPaw.01G000400 Carya illinoinensis HOM05D003313 ORTHO05D004217 7.0e-11 71.2 93 55.9
Psat3g015640 Pisum sativum HOM05D003313 ORTHO05D004217 9.2e-11 70.9 91 54.9
PSO675G1011 Papaver somniferum HOM05D003313 ORTHO05D004217 1.2e-10 70.5 103 52.4
Hund24556 Selenicereus undatus HOM05D003313 ORTHO05D004217 1.6e-10 70.1 84 57.1
Aa31LG11G3950 Aethionema arabicum HOM05D003313 ORTHO05D004217 2.0e-10 69.7 102 51.0
TWI38G1822 Tripterygium wilfordii HOM05D003313 ORTHO05D004217 2.0e-10 69.7 115 53.0
TWI39G0913 Tripterygium wilfordii HOM05D003313 ORTHO05D004217 2.0e-10 69.7 105 54.3
Glyma.03G226400 Glycine max HOM05D003313 ORTHO05D004217 2.7e-10 69.3 82 56.1
THA.LOC104814960 Tarenaya hassleriana HOM05D003313 ORTHO05D004217 2.7e-10 69.3 84 54.8
Actinidia17722 Actinidia chinensis HOM05D003313 ORTHO05D004217 3.5e-10 68.9 99 55.6
Ah.13g077320 Amaranthus hybridus HOM05D003313 ORTHO05D004217 3.5e-10 68.9 85 54.1
Thhalv10003520m.g Eutrema salsugineum HOM05D003313 ORTHO05D004217 3.5e-10 68.9 97 51.5
Glyma.19G223400 Glycine max HOM05D003313 ORTHO05D004217 3.5e-10 68.9 99 50.5
Actinidia11708 Actinidia chinensis HOM05D003313 ORTHO05D004217 4.5e-10 68.6 99 54.5
HanXRQChr15g0468281 Helianthus annuus HOM05D003313 ORTHO05D004217 4.5e-10 68.6 105 52.4
PSO541G4460 Papaver somniferum HOM05D003313 ORTHO05D004217 4.5e-10 68.6 103 52.4
Medtr7g111080 Medicago truncatula HOM05D003313 ORTHO05D004217 7.8e-10 67.8 100 50.0
EL10Ac3g07331 Beta vulgaris HOM05D003313 ORTHO05D004217 1.0e-09 67.4 93 50.5
CARHR188770 Cardamine hirsuta HOM05D003313 ORTHO05D004217 1.0e-09 67.4 98 55.1
ECA240G0535 Erigeron canadensis HOM05D003313 ORTHO05D004217 1.0e-09 67.4 83 57.8
arahy.Tifrunner.gnm1.ann1.9JB77L Arachis hypogaea HOM05D003313 ORTHO05D004217 1.3e-09 67.0 105 49.5
arahy.Tifrunner.gnm1.ann1.XWZQ7T Arachis hypogaea HOM05D003313 ORTHO05D004217 1.3e-09 67.0 105 49.5
SalBow4G1329 Salvia bowleyana HOM05D003313 ORTHO05D004217 1.3e-09 67.0 85 54.1
Sp2g22700 Schrenkiella parvula HOM05D003313 ORTHO05D004217 1.3e-09 67.0 97 51.5
Phvul.001G220300 Phaseolus vulgaris HOM05D003313 ORTHO05D004217 1.7e-09 66.6 99 49.5
AUR62018429 Chenopodium quinoa HOM05D003313 ORTHO05D004217 2.3e-09 66.2 85 55.3
SalBow4G0229 Salvia bowleyana HOM05D003313 ORTHO05D004217 2.3e-09 66.2 99 51.5
HPP92_021469 Vanilla planifolia HOM05D003313 ORTHO05D004217 2.3e-09 66.2 100 53.0
VMungo1383G1216 Vigna mungo HOM05D003313 ORTHO05D004217 2.3e-09 66.2 99 49.5
BolC9t53629H Brassica oleracea HOM05D003313 ORTHO05D004217 2.9e-09 65.9 102 50.0
MD10G1148800 Malus domestica HOM05D003313 ORTHO05D004217 3.8e-09 65.5 114 47.4
Gohir.D08G026400 Gossypium hirsutum HOM05D003313 ORTHO05D004217 6.6e-09 64.7 97 52.6
Gorai.004G022900 Gossypium raimondii HOM05D003313 ORTHO05D004217 6.6e-09 64.7 97 52.6
MSTRG.27897 Avicennia marina HOM05D003313 ORTHO05D004217 8.6e-09 64.3 112 49.1
CDE09G0721 Ceratophyllum demersum HOM05D003313 ORTHO05D004217 1.1e-08 63.9 109 48.6
AUR62021005 Chenopodium quinoa HOM05D003313 ORTHO05D004217 1.1e-08 63.9 85 54.1
CSS0008361 Camellia sinensis var. sinensis HOM05D003313 ORTHO05D004217 1.5e-08 63.5 97 50.5
CSS0011425 Camellia sinensis var. sinensis HOM05D003313 ORTHO05D004217 1.5e-08 63.5 97 50.5
CSS0016348 Camellia sinensis var. sinensis HOM05D003313 ORTHO05D004217 1.5e-08 63.5 84 54.8
Gohir.A08G016300 Gossypium hirsutum HOM05D003313 ORTHO05D004217 2.5e-08 62.8 95 49.5
Lalb_Chr18g0046271 Lupinus albus HOM05D003313 ORTHO05D004217 2.5e-08 62.8 117 46.2
SGA_v2.0_scaffold311G48230 Striga asiatica HOM05D003313 ORTHO05D004217 2.5e-08 62.8 118 47.5
Carub.0006s2256 Capsella rubella HOM05D003313 ORTHO05D004217 3.3e-08 62.4 97 49.5
Peaxi162Scf00071g00133 Petunia axillaris HOM05D003313 ORTHO05D004217 3.3e-08 62.4 101 47.5
C09p07140 Brassica napus HOM05D003313 ORTHO05D004217 4.3e-08 62.0 73 54.8
Peaxi162Scf00194g00629 Petunia axillaris HOM05D003313 ORTHO05D004217 4.3e-08 62.0 103 49.5
C07p43000 Brassica napus HOM05D003313 ORTHO05D004217 5.6e-08 61.6 65 60.0
BolC7t44829H Brassica oleracea HOM05D003313 ORTHO05D004217 5.6e-08 61.6 65 60.0
Sc10g0006280 Simmondsia chinensis HOM05D003313 ORTHO05D004217 5.6e-08 61.6 101 51.5
A06p35540 Brassica napus HOM05D003313 ORTHO05D004217 7.3e-08 61.2 66 59.1
BraA06t26479Z Brassica rapa HOM05D003313 ORTHO05D004217 7.3e-08 61.2 66 59.1
Cc02_g36830 Coffea canephora HOM05D003313 ORTHO05D004217 7.3e-08 61.2 103 48.5
Nitab4.5_0005421g0020 Nicotiana tabacum HOM05D003313 ORTHO05D004217 7.3e-08 61.2 103 48.5
Nitab4.5_0011890g0010 Nicotiana tabacum HOM05D003313 ORTHO05D004217 7.3e-08 61.2 103 48.5
Nitab4.5_0000399g0070 Nicotiana tabacum HOM05D003313 ORTHO05D004217 9.5e-08 60.8 103 48.5
Nitab4.5_0004090g0090 Nicotiana tabacum HOM05D003313 ORTHO05D004217 9.5e-08 60.8 103 48.5
Os01g0653800 Oryza sativa ssp. japonica HOM05D003313 ORTHO05D004217 9.5e-08 60.8 54 68.5
AT5G24710 Arabidopsis thaliana HOM05D003313 ORTHO05D004217 1.2e-07 60.5 96 49.0
Hund19080 Selenicereus undatus HOM05D003313 ORTHO05D004217 1.2e-07 60.5 82 51.2
PGSC0003DMG400018227 Solanum tuberosum HOM05D003313 ORTHO05D004217 1.2e-07 60.5 104 48.1
Ca_09260_v3 Cicer arietinum L. HOM05D003313 ORTHO05D004217 1.6e-07 60.1 65 63.1
DCAR_029312 Daucus carota HOM05D003313 ORTHO05D004217 1.6e-07 60.1 100 49.0
DCAR_029313 Daucus carota HOM05D003313 ORTHO05D004217 1.6e-07 60.1 100 49.0
DCAR_032260 Daucus carota HOM05D003313 ORTHO05D004217 1.6e-07 60.1 100 49.0
Oeu016865.1 Olea europaea HOM05D003313 ORTHO05D004217 2.1e-07 59.7 98 46.9
CSS0044155 Camellia sinensis var. sinensis HOM05D003313 ORTHO05D004217 3.6e-07 58.9 103 46.6
AL6G36310 Arabidopsis lyrata HOM05D003313 ORTHO05D004217 4.7e-07 58.5 96 47.9
DCAR_029787 Daucus carota HOM05D003313 ORTHO05D004217 6.1e-07 58.2 102 49.0
Solyc01g102510.4 Solanum lycopersicum HOM05D003313 ORTHO05D004217 8.0e-07 57.8 104 48.1
Sopen01g044950 Solanum pennellii HOM05D003313 ORTHO05D004217 8.0e-07 57.8 104 48.1
Lsat_1_v5_gn_7_68120 Lactuca sativa HOM05D003313 ORTHO05D004217 1.0e-06 57.4 64 59.4
A09p06410 Brassica napus HOM05D003313 ORTHO05D004217 1.8e-06 56.6 99 46.5
BraA09t36285Z Brassica rapa HOM05D003313 ORTHO05D004217 1.8e-06 56.6 99 46.5
Zm00001eb359400 Zea mays HOM05D003313 ORTHO05D004217 1.8e-06 56.6 92 48.9
CAN.G1379.33 Capsicum annuum HOM05D003313 ORTHO05D004217 2.3e-06 56.2 103 46.6
Migut.B00692 Erythranthe guttata HOM05D003313 ORTHO05D004217 4.0e-06 55.5 102 48.0
Zm00001eb158110 Zea mays HOM05D003313 ORTHO05D004217 8.9e-06 54.3 90 48.9


User provided reference genes

Program Settings