Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0620G003 Amborella trichopoda HOM05D004773 ORTHO05D005943 1.4e-184 649.4 316 100.0
MBI04_g12483_MAGBIO Magnolia biondii HOM05D004773 ORTHO05D005943 1.2e-124 450.3 307 72.3
TAR317G0002 Trochodendron aralioides HOM05D004773 ORTHO05D005943 4.0e-123 445.3 310 71.3
Aqoxy5G04203 Aquilegia oxysepala HOM05D004773 ORTHO05D005943 1.0e-118 430.6 301 70.8
Nn2g15176 Nelumbo nucifera HOM05D004773 ORTHO05D005943 1.8e-115 419.9 307 65.8
QL09p005927 Quercus lobata HOM05D004773 ORTHO05D005943 9.8e-114 414.1 302 67.2
Ciclev10032178m.g Citrus clementina HOM05D004773 ORTHO05D005943 3.7e-113 412.1 308 65.6
Manes.08G158200 Manihot esculenta HOM05D004773 ORTHO05D005943 1.6e-111 406.8 307 64.2
Carub.0006s1581 Capsella rubella HOM05D004773 ORTHO05D005943 7.8e-111 404.4 306 63.1
AL6G28660 Arabidopsis lyrata HOM05D004773 ORTHO05D005943 1.3e-110 403.7 304 63.2
CiPaw.05G210200 Carya illinoinensis HOM05D004773 ORTHO05D005943 1.7e-110 403.3 306 65.4
vmacro15870 Vaccinium macrocarpon HOM05D004773 ORTHO05D005943 2.3e-110 402.9 288 68.1
BcaB08g36761 Brassica carinata HOM05D004773 ORTHO05D005943 3.9e-110 402.1 306 63.7
Lj1P1212T41 Lonicera japonica HOM05D004773 ORTHO05D005943 3.9e-110 402.1 290 66.6
Thhalv10014121m.g Eutrema salsugineum HOM05D004773 ORTHO05D005943 6.6e-110 401.4 303 63.7
Sp6g26650 Schrenkiella parvula HOM05D004773 ORTHO05D005943 6.6e-110 401.4 310 62.9
Lj2g0008141 Lotus japonicus HOM05D004773 ORTHO05D005943 1.9e-109 399.8 311 62.7
CDE07G0301 Ceratophyllum demersum HOM05D004773 ORTHO05D005943 2.5e-109 399.4 302 63.9
C09p59580 Brassica napus HOM05D004773 ORTHO05D005943 3.3e-109 399.1 304 63.8
Cfa016123 Carpinus fangiana HOM05D004773 ORTHO05D005943 4.3e-109 398.7 308 64.6
MD15G1141100 Malus domestica HOM05D004773 ORTHO05D005943 4.3e-109 398.7 294 68.0
Thecc.05G229300 Theobroma cacao HOM05D004773 ORTHO05D005943 4.3e-109 398.7 307 63.2
AT5G17570 Arabidopsis thaliana HOM05D004773 ORTHO05D005943 5.6e-109 398.3 304 62.2
BolC9t58797H Brassica oleracea HOM05D004773 ORTHO05D005943 7.3e-109 397.9 304 63.5
BcaC04g18778 Brassica carinata HOM05D004773 ORTHO05D005943 1.6e-108 396.7 301 63.8
A10p21830 Brassica napus HOM05D004773 ORTHO05D008759 1.6e-108 396.7 309 62.8
Haze_00339 Corylus avellana HOM05D004773 ORTHO05D005943 1.6e-108 396.7 308 64.3
ECA234G3816 Erigeron canadensis HOM05D004773 ORTHO05D005943 2.8e-108 396.0 286 66.1
Duzib128G1941 Durio zibethinus HOM05D004773 ORTHO05D005943 6.2e-108 394.8 307 62.2
THA.LOC104802901 Tarenaya hassleriana HOM05D004773 ORTHO05D005943 8.0e-108 394.4 303 62.4
Atru.chr2.1725 Acer truncatum HOM05D004773 ORTHO05D005943 1.4e-107 393.7 307 63.5
Ca_04503_v3 Cicer arietinum L. HOM05D004773 ORTHO05D005943 1.4e-107 393.7 311 61.4
Psat1g096800 Pisum sativum HOM05D004773 ORTHO05D005943 1.4e-107 393.7 301 63.5
Gohir.D11G235500 Gossypium hirsutum HOM05D004773 ORTHO05D005943 2.3e-107 392.9 303 62.7
HanXRQChr17g0555701 Helianthus annuus HOM05D004773 ORTHO05D005943 3.1e-107 392.5 290 65.2
Gorai.007G248200 Gossypium raimondii HOM05D004773 ORTHO05D005943 4.0e-107 392.1 303 62.7
Cpa.g.sc73.89 Carica papaya HOM05D004773 ORTHO05D005943 6.8e-107 391.3 305 63.3
Medtr6g033025 Medicago truncatula HOM05D004773 ORTHO05D005943 1.5e-106 390.2 311 61.1
Actinidia11804 Actinidia chinensis HOM05D004773 ORTHO05D005943 2.0e-106 389.8 291 64.9
Rhsim02G0120400 Rhododendron simsii HOM05D000873 ORTHO05D002948 2.0e-106 389.8 288 66.3
AUR62016916 Chenopodium quinoa HOM05D004773 ORTHO05D005943 5.8e-106 388.3 304 61.8
PSO063G3794 Papaver somniferum HOM05D004773 ORTHO05D005943 7.5e-106 387.9 294 65.0
AUR62014736 Chenopodium quinoa HOM05D004773 ORTHO05D005943 9.8e-106 387.5 308 61.0
Hund21271 Selenicereus undatus HOM05D004773 ORTHO05D005943 1.7e-105 386.7 304 60.5
arahy.Tifrunner.gnm1.ann1.WJU3K5 Arachis hypogaea HOM05D004773 ORTHO05D005943 3.7e-105 385.6 310 60.0
Os04g0577500 Oryza sativa ssp. japonica HOM05D004773 ORTHO05D005943 3.7e-105 385.6 292 63.7
Lalb_Chr06g0173871 Lupinus albus HOM05D004773 ORTHO05D005943 8.3e-105 384.4 309 59.9
Potri.013G073800 Populus trichocarpa HOM05D004773 ORTHO05D005943 8.3e-105 384.4 294 64.3
Hma1.2p1_0144F.1_g064840 Hydrangea macrophylla HOM05D004773 ORTHO05D005943 1.4e-104 383.6 288 64.9
Sc17g0006500 Simmondsia chinensis HOM05D004773 ORTHO05D005943 4.1e-104 382.1 301 61.5
TWI32G1059 Tripterygium wilfordii HOM05D004773 ORTHO05D005943 4.1e-104 382.1 306 62.1
Aa31LG11G12090 Aethionema arabicum HOM05D004773 ORTHO05D005943 6.0e-103 378.3 289 64.7
Sabra13G0063900 Salix brachista HOM05D004773 ORTHO05D008759 1.0e-102 377.5 298 62.4
CsaV3_3G010040 Cucumis sativus L. HOM05D004773 ORTHO05D005943 1.3e-102 377.1 305 60.3
Prupe.7G272000 Prunus persica HOM05D004773 ORTHO05D005943 2.3e-102 376.3 295 65.1
Sed0007971 Sechium edule HOM05D004773 ORTHO05D005943 2.3e-102 376.3 305 60.3
Eucgr.F01970 Eucalyptus grandis HOM05D004773 ORTHO05D005943 3.0e-102 375.9 287 63.4
SalBow8G5056 Salvia bowleyana HOM05D004773 ORTHO05D005943 5.1e-102 375.2 286 63.6
MELO3C006226.2 Cucumis melo HOM05D004773 ORTHO05D005943 6.6e-102 374.8 305 60.0
Zm00001eb073330 Zea mays HOM05D004773 ORTHO05D005943 6.6e-102 374.8 298 60.4
Cc02_g12570 Coffea canephora HOM05D004773 ORTHO05D005943 8.6e-102 374.4 298 60.7
Solyc02g078980.3 Solanum lycopersicum HOM05D004773 ORTHO05D005943 1.1e-101 374.0 300 60.7
Lsat_1_v5_gn_4_57340 Lactuca sativa HOM05D004773 ORTHO05D005943 2.5e-101 372.9 284 62.0
Oeu053928.1 Olea europaea HOM05D004773 ORTHO05D005943 5.6e-101 371.7 317 56.8
PGR102G2546 Punica granatum HOM05D004773 ORTHO05D005943 2.8e-100 369.4 281 63.3
Migut.M01200 Erythranthe guttata HOM05D004773 ORTHO05D005943 4.7e-100 368.6 293 61.8
Sopen02g023790 Solanum pennellii HOM05D004773 ORTHO05D005943 4.7e-100 368.6 300 59.0
MSTRG.7300 Avicennia marina HOM05D004773 ORTHO05D005943 1.1e-99 367.5 297 59.3
Nitab4.5_0003676g0020 Nicotiana tabacum HOM05D004773 ORTHO05D005943 1.4e-99 367.1 323 54.5
GSVIVG01019376001 Vitis vinifera HOM05D004773 ORTHO05D005943 1.8e-99 366.7 288 62.8
Nitab4.5_0005399g0010 Nicotiana tabacum HOM05D004773 ORTHO05D005943 3.1e-99 365.9 322 55.0
CANSAT01G2664 Cannabis sativa HOM05D004773 ORTHO05D005943 6.8e-99 364.8 281 64.4
DCAR_024890 Daucus carota HOM05D004773 ORTHO05D005943 8.9e-99 364.4 310 56.1
Peaxi162Scf00527g00065 Petunia axillaris HOM05D004773 ORTHO05D005943 1.2e-98 364.0 307 58.3
FAN05G1629 Fragaria x ananassa HOM05D004773 ORTHO05D005943 7.6e-98 361.3 280 66.1
FAN09G3809 Fragaria x ananassa HOM05D004773 ORTHO05D005943 9.9e-98 360.9 280 65.4
FAN14G1019 Fragaria x ananassa HOM05D004773 ORTHO05D005943 9.9e-98 360.9 280 66.1
PGSC0003DMG400022363 Solanum tuberosum HOM05D004773 ORTHO05D005943 1.3e-97 360.5 304 57.9
HPP92_001431 Vanilla planifolia HOM05D004773 ORTHO05D005943 1.7e-97 360.1 294 60.2
FvH4_6g13930 Fragaria vesca HOM05D004773 ORTHO05D005943 2.2e-97 359.8 280 66.1
FAN09G0676 Fragaria x ananassa HOM05D004773 ORTHO05D005943 4.9e-97 358.6 281 65.5
FAN02G0119 Fragaria x ananassa HOM05D004773 ORTHO05D005943 8.3e-97 357.8 280 65.7
FAN09G4020 Fragaria x ananassa HOM05D004773 ORTHO05D005943 8.3e-97 357.8 280 65.7
FAN14G4391 Fragaria x ananassa HOM05D004773 ORTHO05D005943 1.4e-96 357.1 280 65.4
FAN05G3354 Fragaria x ananassa HOM05D004773 ORTHO05D005943 1.9e-96 356.7 279 65.6
FvH4_6g14060 Fragaria vesca HOM05D004773 ORTHO05D005943 4.1e-96 355.5 280 65.0
ClCG05G002600 Citrullus lanatus HOM05D004773 ORTHO05D005943 9.2e-96 354.4 353 52.1
HPP92_001439 Vanilla planifolia HOM05D004773 ORTHO05D005943 9.2e-96 354.4 294 59.5
HanXRQChr12g0364651 Helianthus annuus HOM05D004773 ORTHO05D005943 1.2e-95 354.0 283 59.0
CAN.G1181.18 Capsicum annuum HOM05D004773 ORTHO05D005943 2.1e-95 353.2 304 57.6
SGA_v2.0_scaffold114G31969 Striga asiatica HOM05D004773 ORTHO05D005943 2.1e-95 353.2 285 58.9
Eucgr.F01964 Eucalyptus grandis HOM05D004773 ORTHO05D005943 1.7e-94 350.1 293 58.0
THA.LOC104802900 Tarenaya hassleriana HOM05D004773 ORTHO05D005943 2.3e-94 349.7 288 58.7
Glyma.16G151100 Glycine max HOM05D004773 ORTHO05D005943 3.9e-94 349.0 274 62.4
CARHR195610 Cardamine hirsuta HOM05D004773 ORTHO05D005943 3.3e-93 345.9 256 64.1
FAN09G2979 Fragaria x ananassa HOM05D004773 ORTHO05D005943 5.6e-93 345.1 279 65.2
Phvul.004G078000 Phaseolus vulgaris HOM05D004773 ORTHO05D005943 2.8e-92 342.8 272 62.9
ECA234G0571 Erigeron canadensis HOM05D000140 ORTHO05D000087 1.1e-91 340.9 282 57.1
Cc02_g14730 Coffea canephora HOM05D004773 ORTHO05D005943 1.5e-90 337.0 287 57.8
arahy.Tifrunner.gnm1.ann1.KNV4WG Arachis hypogaea HOM05D004773 ORTHO05D005943 5.8e-90 335.1 310 53.5
Pp3c12_11300 Physcomitrium patens HOM05D004773 ORTHO05D005943 9.9e-90 334.3 303 51.5
Gohir.A11G222000 Gossypium hirsutum HOM05D004773 ORTHO05D005943 2.9e-89 332.8 231 68.0
PSO063G1994 Papaver somniferum HOM05D004773 ORTHO05D005943 1.9e-88 330.1 286 58.0
SMO367G0365 Selaginella moellendorffii HOM05D004773 ORTHO05D005943 5.4e-88 328.6 287 54.0
AL3G12620 Arabidopsis lyrata HOM05D004773 ORTHO05D005943 1.2e-87 327.4 285 55.8
Aa31LG5G14030 Aethionema arabicum HOM05D004773 ORTHO05D005943 4.6e-87 325.5 285 54.4
Carub.0003s0264 Capsella rubella HOM05D004773 ORTHO05D005943 1.0e-86 324.3 285 54.7
Thecc.05G229900 Theobroma cacao HOM05D004773 ORTHO05D005943 3.0e-86 322.8 288 55.2
AUR62012595 Chenopodium quinoa HOM05D004773 ORTHO05D005943 3.9e-86 322.4 231 63.6
Duzib177G1208 Durio zibethinus HOM05D004773 ORTHO05D005943 8.7e-86 321.2 286 54.5
SHI39094 Sapria himalayana HOM05D004773 ORTHO05D005943 5.6e-85 318.5 330 50.3
Gohir.D13G163600 Gossypium hirsutum HOM05D004773 ORTHO05D005943 1.4e-83 313.9 290 52.8
A06p26410 Brassica napus HOM05D004773 ORTHO05D005943 2.4e-83 313.2 285 52.6
BNapus_Darmor_BZH_scaffold_78p00160 Brassica napus HOM05D004773 ORTHO05D005943 2.4e-83 313.2 285 52.6
AagrBONN_evm.TU.Sc2ySwM_362.2127 Anthoceros agrestis HOM05D004773 ORTHO05D005943 6.9e-83 311.6 283 51.9
Gohir.A13G158600 Gossypium hirsutum HOM05D004773 ORTHO05D005943 9.0e-83 311.2 290 52.8
AUR62014585 Chenopodium quinoa HOM05D004773 ORTHO05D005943 1.2e-82 310.8 304 53.0
BNapus_Darmor_BZH_scaffold_162p00180 Brassica napus HOM05D004773 ORTHO05D005943 5.8e-82 308.5 286 52.4
BolC1t05828H Brassica oleracea HOM05D004773 ORTHO05D005943 5.8e-82 308.5 286 52.4
BraA01t04577Z Brassica rapa HOM05D004773 ORTHO05D005943 7.6e-82 308.1 287 52.3
Mapoly0004s0110 Marchantia polymorpha HOM05D004773 ORTHO05D005943 3.8e-81 305.8 311 49.2
Gorai.013G199600 Gossypium raimondii HOM05D004773 ORTHO05D005943 9.3e-80 301.2 290 51.4
TPR.G6097 Trifolium pratense HOM05D004773 ORTHO05D005943 1.6e-79 300.4 311 52.4
PSO782G1422 Papaver somniferum HOM05D004773 ORTHO05D005943 2.1e-76 290.0 185 73.0
FAN02G4326 Fragaria x ananassa HOM05D004773 ORTHO05D005943 8.1e-76 288.1 205 69.3
BcaC09g47749 Brassica carinata HOM05D004773 ORTHO05D005943 1.7e-73 280.4 298 47.7
Dinv40507 Davidia involucrata HOM05D004773 ORTHO05D005943 1.1e-72 277.7 307 52.8
CBR_g32162 Chara braunii HOM05D004773 ORTHO05D001111 1.9e-72 276.9 316 46.2
Thhalv10021316m.g Eutrema salsugineum HOM05D004773 ORTHO05D005943 6.7e-70 268.5 236 55.1
AT3G03500 Arabidopsis thaliana HOM05D004773 ORTHO05D005943 2.4e-67 260.0 196 61.7
AUR62014597 Chenopodium quinoa HOM05D004773 ORTHO05D005943 1.3e-65 254.2 215 56.7
unitig_37.g12340 Utricularia gibba HOM05D004773 ORTHO05D005943 6.9e-51 205.3 149 62.4
VMungo0464G1467 Vigna mungo HOM05D004773 ORTHO05D005943 1.2e-50 204.5 170 55.3
COL.COLO4_31150 Corchorus olitorius HOM05D004773 ORTHO05D005943 1.3e-44 184.5 144 57.6
Sp3g02490 Schrenkiella parvula HOM05D004773 ORTHO05D005943 1.7e-44 184.1 320 37.8
COL.COLO4_31152 Corchorus olitorius HOM05D007715 ORTHO05D009760 2.0e-42 177.2 202 49.0
VMungo0464G0773 Vigna mungo HOM05D004773 ORTHO05D005943 9.4e-40 168.3 161 55.9
RcHm_v2.0_Chr3g0466941 Rosa chinensis HOM05D004773 ORTHO05D005943 3.5e-34 149.8 137 59.9
CAN.G1247.2 Capsicum annuum HOM05D004773 ORTHO05D005943 2.3e-30 137.1 215 36.3
HPP92_010162 Vanilla planifolia HOM05D004773 ORTHO05D005943 1.1e-27 128.3 78 70.5
SEGI_00738 Sequoiadendron giganteum HOM05D004773 ORTHO05D005943 2.4e-27 127.1 139 50.4
PRCOL_00005876 Prasinoderma coloniale HOM05D004773 ORTHO05D005943 4.2e-24 116.3 221 34.4
MCO10G115 Micromonas commoda HOM05D004773 ORTHO05D005943 1.8e-22 110.9 304 29.3
Cre17.g717200 Chlamydomonas reinhardtii HOM05D004773 ORTHO05D005943 1.2e-21 108.2 280 30.4
Cre03.g169800 Chlamydomonas reinhardtii HOM05D005131 ORTHO05D005943 8.3e-20 102.1 300 26.0
PGSC0003DMG400004239 Solanum tuberosum HOM05D004773 ORTHO05D005943 8.0e-15 85.5 51 66.7
Nn2g15177 Nelumbo nucifera HOM05D004773 ORTHO05D005943 1.0e-14 85.1 100 47.0
TPR.G35071 Trifolium pratense HOM05D004773 ORTHO05D005943 1.4e-14 84.7 52 71.2
AL6G10940 Arabidopsis lyrata HOM05D004773 ORTHO05D005943 5.2e-14 82.8 71 56.3
Haze_27322 Corylus avellana HOM05D005131 ORTHO05D006645 1.7e-12 77.8 277 26.0
Cre02.g085650 Chlamydomonas reinhardtii HOM05D005131 ORTHO05D006645 3.7e-12 76.6 238 31.1
Pp3c8_2710 Physcomitrium patens HOM05D004773 ORTHO05D005943 1.4e-11 74.7 100 36.0
AL3G13200 Arabidopsis lyrata HOM05D004773 ORTHO05D005943 2.7e-10 70.5 48 62.5
SEGI_31644 Sequoiadendron giganteum HOM05D004773 ORTHO05D005943 7.7e-10 68.9 53 56.6
AUR62014598 Chenopodium quinoa HOM05D004773 ORTHO05D005943 2.9e-09 67.0 76 48.7
PRCOL_00003277 Prasinoderma coloniale HOM05D005131 ORTHO05D006645 2.9e-09 67.0 266 26.7
Glyma.16G150900 Glycine max HOM05D004773 ORTHO05D005943 3.8e-09 66.6 56 55.4
TWI74G0987 Tripterygium wilfordii HOM05D005131 ORTHO05D006645 8.0e-07 58.9 210 28.1
MCO10G056 Micromonas commoda HOM05D005131 ORTHO05D006645 1.8e-06 57.8 158 29.7


User provided reference genes

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