Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0618G328 Amborella trichopoda HOM05D005457 ORTHO05D006350 0.0e+00 2619.3 1627 100.0
Nn2g13569 Nelumbo nucifera HOM05D005457 ORTHO05D006350 4.2e-144 517.3 1839 37.1
TAR369G0749 Trochodendron aralioides HOM05D005457 ORTHO05D006350 1.9e-136 491.9 1829 39.3
Nn2g11331 Nelumbo nucifera HOM05D005457 ORTHO05D006350 9.5e-128 463.0 1805 39.4
Dinv34321 Davidia involucrata HOM05D005457 ORTHO05D006350 1.2e-117 429.5 1809 37.7
QL01p028955 Quercus lobata HOM05D005457 ORTHO05D006350 1.7e-113 415.6 1676 37.4
Ciclev10027683m.g Citrus clementina HOM05D005457 ORTHO05D006350 3.0e-113 414.8 1689 34.9
Haze_24232 Corylus avellana HOM05D005457 ORTHO05D006350 7.3e-112 410.2 1718 35.6
GSVIVG01024823001 Vitis vinifera HOM05D005457 ORTHO05D006350 1.8e-110 405.6 1797 37.3
Hma1.2p1_0543F.1_g175290 Hydrangea macrophylla HOM05D005457 ORTHO05D006350 3.1e-110 404.8 1742 33.6
Atru.chr3.4038 Acer truncatum HOM05D005457 ORTHO05D006350 7.3e-104 383.6 1691 34.1
MBI14_g32923_MAGBIO Magnolia biondii HOM05D005457 ORTHO05D006350 8.9e-102 376.7 1129 35.7
Dinv17076 Davidia involucrata HOM05D005457 ORTHO05D006350 7.6e-101 373.6 1742 34.0
Dinv43020 Davidia involucrata HOM05D005457 ORTHO05D006350 7.6e-101 373.6 1742 34.0
Dinv43077 Davidia involucrata HOM05D005457 ORTHO05D006350 7.6e-101 373.6 1742 34.0
Prupe.6G064800 Prunus persica HOM05D005457 ORTHO05D006350 1.3e-97 362.8 1683 31.8
MD11G1084500 Malus domestica HOM05D005457 ORTHO05D006350 1.5e-96 359.4 1626 32.0
CiPaw.13G084000 Carya illinoinensis HOM05D005457 ORTHO05D006350 6.2e-95 354.0 1691 34.7
ClCG03G001030 Citrullus lanatus HOM05D005457 ORTHO05D006350 4.9e-92 344.4 1695 33.8
Manes.02G123500 Manihot esculenta HOM05D005457 ORTHO05D006350 5.4e-91 340.9 1685 35.4
Aqoxy1G00759 Aquilegia oxysepala HOM05D005457 ORTHO05D006350 6.0e-90 337.4 1735 31.5
vmacro03007 Vaccinium macrocarpon HOM05D005457 ORTHO05D006350 3.9e-89 334.7 1704 33.7
Gohir.A03G047600 Gossypium hirsutum HOM05D005457 ORTHO05D006350 6.6e-89 334.0 1657 29.5
MD03G1079900 Malus domestica HOM05D005457 ORTHO05D006350 1.1e-88 333.2 1630 32.7
Gohir.D03G119500 Gossypium hirsutum HOM05D005457 ORTHO05D006350 2.5e-88 332.0 1670 30.1
Lj1C143T9 Lonicera japonica HOM05D005457 ORTHO05D006350 2.5e-88 332.0 1649 32.8
Sc12g0001060 Simmondsia chinensis HOM05D005457 ORTHO05D006350 2.8e-87 328.6 1687 36.3
Gorai.003G125700 Gossypium raimondii HOM05D005457 ORTHO05D006350 6.9e-86 323.9 1683 31.7
Gorai.003G125900 Gossypium raimondii HOM05D005457 ORTHO05D006350 6.9e-86 323.9 1661 30.2
Thecc.09G309000 Theobroma cacao HOM05D005457 ORTHO05D006350 2.0e-85 322.4 1714 32.4
CsaV3_1G035890 Cucumis sativus L. HOM05D005457 ORTHO05D006350 1.9e-80 305.8 1724 35.0
Gohir.D03G119400 Gossypium hirsutum HOM05D005457 ORTHO05D006350 5.6e-80 304.3 1682 31.7
Potri.001G247100 Populus trichocarpa HOM05D005457 ORTHO05D006350 1.6e-79 302.8 1677 31.7
Sabra09G0028400 Salix brachista HOM05D005457 ORTHO05D006350 1.2e-77 296.6 1693 31.7
FvH4_3g37470 Fragaria vesca HOM05D005457 ORTHO05D006350 6.5e-76 290.8 1664 29.7
Hund11609 Selenicereus undatus HOM05D005457 ORTHO05D006350 2.5e-75 288.9 1700 34.4
FAN11G1716 Fragaria x ananassa HOM05D005457 ORTHO05D006350 2.1e-74 285.8 1680 30.5
Rhsim13G0075000 Rhododendron simsii HOM05D005457 ORTHO05D006350 2.7e-74 285.4 1690 33.8
FAN16G3594 Fragaria x ananassa HOM05D005457 ORTHO05D006350 1.0e-73 283.5 1671 31.3
RcHm_v2.0_Chr5g0067371 Rosa chinensis HOM05D005457 ORTHO05D006350 1.3e-73 283.1 241 60.6
FAN25G1264 Fragaria x ananassa HOM05D005457 ORTHO05D006350 1.8e-73 282.7 1655 30.6
EL10Ac7g16099 Beta vulgaris HOM05D005457 ORTHO05D006350 3.9e-73 281.6 1678 33.7
SHI05894 Sapria himalayana HOM05D005457 ORTHO05D006350 1.1e-72 280.0 1700 32.6
ECA247G2917 Erigeron canadensis HOM05D005457 ORTHO05D006350 1.9e-72 279.3 1639 32.2
Ca_19579_v3 Cicer arietinum L. HOM05D005457 ORTHO05D006350 2.8e-71 275.4 235 60.0
Gohir.A03G047700 Gossypium hirsutum HOM05D005457 ORTHO05D006350 4.8e-71 274.6 1678 34.3
HanXRQChr08g0237081 Helianthus annuus HOM05D005457 ORTHO05D006350 6.2e-71 274.2 1621 34.2
COL.COLO4_19073 Corchorus olitorius HOM05D005457 ORTHO05D006350 3.1e-70 271.9 370 44.1
PSO782G3368 Papaver somniferum HOM05D005457 ORTHO05D006350 3.1e-70 271.9 1620 31.2
FAN21G0431 Fragaria x ananassa HOM05D005457 ORTHO05D006350 6.9e-70 270.8 1664 29.3
Phvul.011G009900 Phaseolus vulgaris HOM05D005457 ORTHO05D006350 6.9e-70 270.8 1667 30.5
TAR623G1178 Trochodendron aralioides HOM05D005457 ORTHO05D006350 9.0e-70 270.4 233 60.1
Lsat_1_v5_gn_9_25441 Lactuca sativa HOM05D005457 ORTHO05D006350 4.5e-69 268.1 234 58.1
Sed0019872 Sechium edule HOM05D005457 ORTHO05D006350 5.8e-69 267.7 1668 31.9
Cpa.g.sc112.89 Carica papaya HOM05D005457 ORTHO05D006350 1.7e-68 266.2 251 57.0
PSO170G6745 Papaver somniferum HOM05D005457 ORTHO05D006350 1.1e-67 263.5 1617 30.6
AUR62001711 Chenopodium quinoa HOM05D005457 ORTHO05D006350 1.4e-67 263.1 1656 31.8
Nitab4.5_0000752g0010 Nicotiana tabacum HOM05D005457 ORTHO05D006350 5.5e-67 261.2 251 54.2
Nitab4.5_0006476g0010 Nicotiana tabacum HOM05D005457 ORTHO05D006350 2.7e-66 258.8 252 52.0
DCAR_027735 Daucus carota HOM05D005457 ORTHO05D006350 3.5e-66 258.5 233 55.4
Psat7g154880 Pisum sativum HOM05D005457 ORTHO05D006350 4.6e-66 258.1 1657 29.9
TPR.G3642 Trifolium pratense HOM05D005457 ORTHO05D006350 1.3e-65 256.5 159 72.3
Lj2C1073G13 Lonicera japonica HOM05D005457 ORTHO05D006350 1.1e-64 253.4 234 57.7
Peaxi162Scf00433g00116 Petunia axillaris HOM05D005457 ORTHO05D006350 1.1e-64 253.4 1656 31.9
Medtr4g037575 Medicago truncatula HOM05D005457 ORTHO05D006350 2.5e-64 252.3 157 72.6
Glyma.12G007800 Glycine max HOM05D005457 ORTHO05D006350 7.4e-64 250.8 1655 30.0
HPP92_001490 Vanilla planifolia HOM05D005457 ORTHO05D006350 1.4e-62 246.5 1769 33.5
Zm00001eb159160 Zea mays HOM05D005457 ORTHO05D006350 2.4e-62 245.7 154 71.4
Lj3g0007084 Lotus japonicus HOM05D005457 ORTHO05D006350 5.3e-62 244.6 1662 33.6
MBI14_g32924_MAGBIO Magnolia biondii HOM05D005457 ORTHO05D006350 2.0e-61 242.7 140 77.1
Zm00001eb358910 Zea mays HOM05D005457 ORTHO05D006350 2.6e-61 242.3 235 53.6
Lalb_Chr01g0000381 Lupinus albus HOM05D005457 ORTHO05D006350 4.5e-61 241.5 1668 31.5
THA.LOC104799410 Tarenaya hassleriana HOM05D005457 ORTHO05D006350 7.7e-61 240.7 232 54.3
Ah.14g082630 Amaranthus hybridus HOM05D005457 ORTHO05D006350 2.2e-60 239.2 1690 33.4
arahy.Tifrunner.gnm1.ann1.L17SH6 Arachis hypogaea HOM05D005457 ORTHO05D006350 8.5e-60 237.3 1684 31.9
VMungo1127G1417 Vigna mungo HOM05D005457 ORTHO05D006350 2.5e-59 235.7 1651 32.1
SalBow2G3533 Salvia bowleyana HOM05D005457 ORTHO05D006350 3.2e-59 235.3 233 49.8
SGA_v2.0_scaffold199G41161 Striga asiatica HOM05D005457 ORTHO05D006350 3.2e-59 235.3 233 50.2
arahy.Tifrunner.gnm1.ann1.U9UY67 Arachis hypogaea HOM05D005457 ORTHO05D006350 1.2e-58 233.4 1656 34.5
CSS0049881 Camellia sinensis var. sinensis HOM05D005457 ORTHO05D006350 3.9e-57 228.4 1308 35.2
TAR623G1322 Trochodendron aralioides HOM05D005457 ORTHO05D006350 3.7e-55 221.9 503 40.0
Solyc09g031650.3 Solanum lycopersicum HOM05D005457 ORTHO05D006350 1.4e-54 219.9 1716 29.1
DCAR_027737 Daucus carota HOM05D005457 ORTHO05D006350 4.1e-54 218.4 230 49.1
Migut.N00905 Erythranthe guttata HOM05D005457 ORTHO05D006350 4.1e-54 218.4 234 47.4
Sopen09g014590 Solanum pennellii HOM05D005457 ORTHO05D006350 6.9e-54 217.6 1698 27.9
CAN.G1002.16 Capsicum annuum HOM05D005457 ORTHO05D006350 1.5e-53 216.5 1663 30.5
Cc00_g21960 Coffea canephora HOM05D005457 ORTHO05D006350 1.7e-52 213.0 1718 28.3
Glyma.09G228800 Glycine max HOM05D005457 ORTHO05D006350 2.5e-51 209.1 1674 32.7
CSS0006949 Camellia sinensis var. sinensis HOM05D005457 ORTHO05D006350 1.4e-49 203.4 758 35.0
A03p11920 Brassica napus HOM05D005457 ORTHO05D006350 3.1e-46 192.2 144 59.0
Potri.009G040500 Populus trichocarpa HOM05D005457 ORTHO05D006350 1.0e-44 187.2 596 33.1
Actinidia25125 Actinidia chinensis HOM05D005457 ORTHO05D006350 2.2e-44 186.0 104 78.8
CSS0035455 Camellia sinensis var. sinensis HOM05D005457 ORTHO05D006350 2.2e-44 186.0 1064 31.2
BolC3t13849H Brassica oleracea HOM05D005457 ORTHO05D006350 2.5e-43 182.6 152 55.9
SEGI_21152 Sequoiadendron giganteum HOM05D005457 ORTHO05D006350 3.6e-42 178.7 179 54.2
CDE09G0137 Ceratophyllum demersum HOM05D000076 ORTHO05D001377 6.1e-42 177.9 123 63.4
Eucgr.B02283 Eucalyptus grandis HOM05D005457 ORTHO05D006350 1.0e-41 177.2 617 33.7
Actinidia25123 Actinidia chinensis HOM05D005457 ORTHO05D006350 2.3e-41 176.0 1072 29.5
AUR62020069 Chenopodium quinoa HOM05D005457 ORTHO05D006350 3.0e-41 175.6 705 30.5
MELO3C020581.2 Cucumis melo HOM05D005457 ORTHO05D006350 1.1e-40 173.7 609 34.2
DCAR_027739 Daucus carota HOM05D005457 ORTHO05D006350 2.0e-40 172.9 1672 27.2
RcHm_v2.0_Chr5g0067361 Rosa chinensis HOM05D005457 ORTHO05D006350 6.3e-39 167.9 437 35.7
Psat5g196760 Pisum sativum HOM05D005457 ORTHO05D002728 1.1e-38 167.2 186 51.1
Lj2A1073T53 Lonicera japonica HOM05D005457 ORTHO05D006350 7.2e-35 154.5 978 29.8
BcaB08g36300 Brassica carinata HOM05D012589 ORTHO05D006350 1.6e-34 153.3 142 49.3
BraA03t10504Z Brassica rapa HOM05D005457 ORTHO05D006350 8.0e-34 151.0 160 47.5
BcaB01g04624 Brassica carinata HOM05D005457 ORTHO05D006350 1.3e-31 143.7 108 59.3
Oeu002456.1 Olea europaea HOM05D005457 ORTHO05D006350 1.3e-31 143.7 113 59.3
CDE02G3816 Ceratophyllum demersum HOM05D034644 ORTHO05D006350 1.4e-30 140.2 659 29.6
PGSC0003DMG400006701 Solanum tuberosum HOM05D005457 ORTHO05D006350 2.9e-28 132.5 585 31.8
Actinidia08557 Actinidia chinensis HOM05D005457 ORTHO05D006350 8.5e-28 131.0 520 31.0
CDE09G0768 Ceratophyllum demersum HOM05D005457 ORTHO05D006350 7.2e-27 127.9 119 58.8
CSS0043795 Camellia sinensis var. sinensis HOM05D005457 ORTHO05D006350 3.6e-26 125.6 69 76.8
CSS0046602 Camellia sinensis var. sinensis HOM05D005457 ORTHO05D006350 3.6e-26 125.6 69 76.8
Manes.01G166000 Manihot esculenta HOM05D005457 ORTHO05D006350 5.7e-24 118.2 171 45.0
Cpa.g.sc112.91 Carica papaya HOM05D005457 ORTHO05D006350 9.2e-22 110.9 115 55.7
CBR_g29779 Chara braunii HOM05D005457 ORTHO05D006350 2.3e-20 106.3 136 34.6
Oeu017421.1 Olea europaea HOM05D005457 ORTHO05D006350 3.8e-20 105.5 330 31.2
Actinidia08559 Actinidia chinensis HOM05D005457 ORTHO05D006350 6.8e-17 94.7 48 85.4
Cpa.g.sc112.90 Carica papaya HOM05D005457 ORTHO05D006350 3.4e-16 92.4 451 26.4
CBR_g34582 Chara braunii HOM05D005457 ORTHO05D006350 5.7e-16 91.7 124 36.3
CBR_g34581 Chara braunii HOM05D005457 ORTHO05D006350 7.5e-16 91.3 131 33.6
CBR_g49555 Chara braunii HOM05D005457 ORTHO05D006350 8.3e-15 87.8 140 27.1
CBR_g44392 Chara braunii HOM05D005457 ORTHO05D006350 1.1e-14 87.4 114 35.1
CBR_g34583 Chara braunii HOM05D005457 ORTHO05D006350 1.8e-14 86.7 96 38.5
unitig_27.g24807 Utricularia gibba HOM05D005457 ORTHO05D006350 1.8e-14 86.7 62 59.7
unitig_27.g24810 Utricularia gibba HOM05D005457 ORTHO05D006350 1.0e-12 80.9 60 61.7
Os12g0155300 Oryza sativa ssp. japonica HOM05D005457 ORTHO05D006350 1.6e-10 73.6 363 25.6
Prupe.6G064700 Prunus persica HOM05D005457 ORTHO05D006350 3.6e-10 72.4 45 73.3
Duzib170G0080 Durio zibethinus HOM05D005457 ORTHO05D006350 2.6e-08 66.2 90 43.3
MCO12G435 Micromonas commoda HOM05D005011 ORTHO05D006443 4.4e-08 65.5 128 32.8
Nn2g14614 Nelumbo nucifera HOM05D005457 ORTHO05D006350 3.2e-06 59.3 88 40.9


User provided reference genes

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