Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0618G287 Amborella trichopoda HOM05D005118 ORTHO05D006038 3.2e-153 545.0 274 100.0
MBI14_g17373_MAGBIO Magnolia biondii HOM05D005118 ORTHO05D006038 1.9e-89 333.2 277 60.6
TAR365G0960 Trochodendron aralioides HOM05D005118 ORTHO05D006038 3.0e-87 325.9 281 61.2
Nn2g14484 Nelumbo nucifera HOM05D005118 ORTHO05D006038 4.4e-86 322.0 277 59.9
GSVIVG01016776001 Vitis vinifera HOM05D005118 ORTHO05D006038 9.8e-86 320.9 278 60.4
CSS0000835 Camellia sinensis var. sinensis HOM05D005118 ORTHO05D006038 8.3e-85 317.8 279 58.8
COL.COLO4_29702 Corchorus olitorius HOM05D005118 ORTHO05D006038 2.4e-84 316.2 276 56.9
Rhsim03G0072700 Rhododendron simsii HOM05D005118 ORTHO05D006038 4.1e-84 315.5 283 59.4
PSO782G2273 Papaver somniferum HOM05D005118 ORTHO05D006038 5.9e-83 311.6 277 57.4
PSO063G5626 Papaver somniferum HOM05D005118 ORTHO05D006038 2.3e-82 309.7 277 57.0
Migut.J01020 Erythranthe guttata HOM05D005118 ORTHO05D006038 3.0e-82 309.3 271 55.0
Prupe.7G104300 Prunus persica HOM05D005118 ORTHO05D006038 6.6e-82 308.1 279 56.3
Sabra06G0162900 Salix brachista HOM05D005118 ORTHO05D006038 8.6e-82 307.8 283 55.5
vmacro07419 Vaccinium macrocarpon HOM05D005118 ORTHO05D006038 1.9e-81 306.6 319 53.0
Aqoxy3G03420 Aquilegia oxysepala HOM05D005118 ORTHO05D006038 5.6e-81 305.1 279 57.0
Ciclev10011946m.g Citrus clementina HOM05D005118 ORTHO05D006038 9.5e-81 304.3 303 52.8
Medtr1g059790 Medicago truncatula HOM05D005118 ORTHO05D006038 1.2e-80 303.9 281 56.6
Medtr8g095460 Medicago truncatula HOM05D005118 ORTHO05D006038 1.6e-80 303.5 282 56.7
Gorai.002G239100 Gossypium raimondii HOM05D005118 ORTHO05D006038 6.2e-80 301.6 280 53.6
TPR.G2549 Trifolium pratense HOM05D005118 ORTHO05D006038 1.1e-79 300.8 281 55.9
Psat6g079520 Pisum sativum HOM05D005118 ORTHO05D006038 1.4e-79 300.4 283 55.8
Gohir.A01G205500 Gossypium hirsutum HOM05D005118 ORTHO05D006038 1.8e-79 300.1 280 52.9
Gohir.D01G195000 Gossypium hirsutum HOM05D005118 ORTHO05D006038 2.3e-79 299.7 280 53.2
Oeu056875.2 Olea europaea HOM05D005118 ORTHO05D006038 2.3e-79 299.7 276 55.8
Glyma.13G154600 Glycine max HOM05D005118 ORTHO05D006038 5.2e-79 298.5 280 57.1
QL05p009399 Quercus lobata HOM05D005118 ORTHO05D006038 5.2e-79 298.5 293 53.9
Atru.chr8.1769 Acer truncatum HOM05D005118 ORTHO05D006038 6.8e-79 298.1 287 55.4
Thecc.05G091100 Theobroma cacao HOM05D005118 ORTHO05D006038 6.8e-79 298.1 280 53.6
RcHm_v2.0_Chr3g0474251 Rosa chinensis HOM05D005118 ORTHO05D006038 1.2e-78 297.4 277 56.3
arahy.Tifrunner.gnm1.ann1.72V09J Arachis hypogaea HOM05D005118 ORTHO05D006038 2.6e-78 296.2 282 53.5
arahy.Tifrunner.gnm1.ann1.W1QNQS Arachis hypogaea HOM05D005118 ORTHO05D006038 2.6e-78 296.2 282 53.5
Lalb_Chr10g0096391 Lupinus albus HOM05D005118 ORTHO05D006038 2.6e-78 296.2 281 54.1
CiPaw.09G015400 Carya illinoinensis HOM05D005118 ORTHO05D006038 1.3e-77 293.9 273 55.3
Lj5g0005733 Lotus japonicus HOM05D005118 ORTHO05D006038 2.9e-77 292.7 282 56.0
SalBow3G3316 Salvia bowleyana HOM05D005118 ORTHO05D006038 4.9e-77 292.0 277 54.9
Sopen09g004710 Solanum pennellii HOM05D005118 ORTHO05D006038 1.1e-76 290.8 278 51.8
FvH4_6g19140 Fragaria vesca HOM05D005118 ORTHO05D006038 5.4e-76 288.5 275 55.6
FAN14G1754 Fragaria x ananassa HOM05D005118 ORTHO05D006038 9.2e-76 287.7 276 55.1
MD12G1027200 Malus domestica HOM05D005118 ORTHO05D006038 9.2e-76 287.7 282 53.2
Ca_00895_v3 Cicer arietinum L. HOM05D005118 ORTHO05D006038 1.2e-75 287.3 281 53.4
Solyc09g009960.3 Solanum lycopersicum HOM05D005118 ORTHO05D006038 3.5e-75 285.8 278 50.7
Atru.chr8.1478 Acer truncatum HOM05D005118 ORTHO05D006038 4.6e-75 285.4 266 55.3
Nitab4.5_0001933g0040 Nicotiana tabacum HOM05D005118 ORTHO05D006038 4.6e-75 285.4 289 51.9
VMungo1309G0892 Vigna mungo HOM05D005118 ORTHO05D006038 4.6e-75 285.4 278 54.0
Eucgr.A02654 Eucalyptus grandis HOM05D005118 ORTHO05D006038 6.0e-75 285.0 273 54.9
TWI77G0553 Tripterygium wilfordii HOM05D005118 ORTHO05D006038 7.8e-75 284.6 284 52.8
CAN.G397.66 Capsicum annuum HOM05D005118 ORTHO05D006038 1.0e-74 284.3 278 52.2
FAN05G3536 Fragaria x ananassa HOM05D005118 ORTHO05D006038 1.3e-74 283.9 277 54.5
FAN02G2546 Fragaria x ananassa HOM05D005118 ORTHO05D006038 2.3e-74 283.1 278 54.0
Dinv21195 Davidia involucrata HOM05D005118 ORTHO05D006038 3.9e-74 282.3 241 61.4
FAN09G1525 Fragaria x ananassa HOM05D005118 ORTHO05D006038 3.9e-74 282.3 278 54.0
TWI53G1403 Tripterygium wilfordii HOM05D005118 ORTHO05D006038 5.0e-74 282.0 269 54.6
Lsat_1_v5_gn_9_20681 Lactuca sativa HOM05D005118 ORTHO05D006038 6.6e-74 281.6 262 56.5
DCAR_013399 Daucus carota HOM05D005118 ORTHO05D006038 8.6e-74 281.2 285 52.6
ECA247G3083 Erigeron canadensis HOM05D005118 ORTHO05D006038 1.1e-73 280.8 263 57.0
Sc02g0000340 Simmondsia chinensis HOM05D005118 ORTHO05D006038 3.3e-73 279.3 280 52.1
CANSAT64G1535 Cannabis sativa HOM05D005118 ORTHO05D006038 5.6e-73 278.5 268 54.9
Lj6g0000791 Lotus japonicus HOM05D005118 ORTHO05D006038 5.6e-73 278.5 269 54.6
Lj6g0018590 Lotus japonicus HOM05D005118 ORTHO05D006038 5.6e-73 278.5 269 54.6
AUR62006198 Chenopodium quinoa HOM05D005118 ORTHO05D006038 7.3e-73 278.1 280 51.8
ClCG08G004490 Citrullus lanatus HOM05D005118 ORTHO05D006038 1.2e-72 277.3 278 51.1
Peaxi162Scf00102g00213 Petunia axillaris HOM05D005118 ORTHO05D006038 2.8e-72 276.2 282 51.8
Oeu017686.1 Olea europaea HOM05D005118 ORTHO05D006038 3.6e-72 275.8 277 52.3
CsaV3_6G003860 Cucumis sativus L. HOM05D005118 ORTHO05D006038 4.7e-72 275.4 278 50.0
Rhsim03G0074200 Rhododendron simsii HOM05D005118 ORTHO05D006038 8.1e-72 274.6 276 54.0
HanXRQChr08g0212801 Helianthus annuus HOM05D005118 ORTHO05D006038 1.1e-71 274.2 267 54.7
EL10Ac7g16902 Beta vulgaris HOM05D001354 ORTHO05D007486 1.8e-71 273.5 282 52.8
Sed0011362 Sechium edule HOM05D005118 ORTHO05D006038 2.3e-71 273.1 279 52.0
Phvul.007G152100 Phaseolus vulgaris HOM05D005118 ORTHO05D006038 2.0e-70 270.0 272 54.8
Lj6g0005905 Lotus japonicus HOM05D005118 ORTHO05D006038 3.4e-70 269.2 270 54.4
MELO3C011647.2 Cucumis melo HOM05D005118 ORTHO05D006038 7.5e-70 268.1 278 49.3
Aa31LG3G4790 Aethionema arabicum HOM05D005118 ORTHO05D006038 1.3e-69 267.3 262 52.3
Sabra16G0082800 Salix brachista HOM05D005118 ORTHO05D006038 6.4e-69 265.0 330 45.2
Aa31LG3G4830 Aethionema arabicum HOM05D005118 ORTHO05D006038 8.3e-69 264.6 262 50.8
C05p56660 Brassica napus HOM05D005118 ORTHO05D006038 1.1e-68 264.2 263 52.1
BolC5t34331H Brassica oleracea HOM05D005118 ORTHO05D006038 1.1e-68 264.2 263 52.1
BraA05t22581Z Brassica rapa HOM05D005118 ORTHO05D006038 1.1e-68 264.2 263 51.7
Zm00001eb000710 Zea mays HOM05D005118 ORTHO05D006038 2.4e-68 263.1 272 48.5
AL3G23010 Arabidopsis lyrata HOM05D005118 ORTHO05D006038 4.1e-68 262.3 265 52.1
A05p37870 Brassica napus HOM05D005118 ORTHO05D006038 2.1e-67 260.0 263 51.0
BcaC05g29371 Brassica carinata HOM05D005118 ORTHO05D006038 7.8e-67 258.1 260 51.5
Carub.0005s0168 Capsella rubella HOM05D005118 ORTHO05D006038 3.0e-66 256.1 264 50.4
Sp3g09700 Schrenkiella parvula HOM05D005118 ORTHO05D006038 5.1e-66 255.4 263 48.7
HPP92_018124 Vanilla planifolia HOM05D005118 ORTHO05D006038 6.6e-66 255.0 264 50.0
BcaB06g25621 Brassica carinata HOM05D005118 ORTHO05D006038 8.6e-66 254.6 261 51.0
Os08g0243100 Oryza sativa ssp. japonica HOM05D005118 ORTHO05D006038 1.1e-65 254.2 265 47.9
CARHR145210 Cardamine hirsuta HOM05D005118 ORTHO05D006038 1.5e-65 253.8 264 51.5
AT3G11470 Arabidopsis thaliana HOM05D005118 ORTHO05D006038 9.5e-65 251.1 239 54.0
THA.LOC104816589 Tarenaya hassleriana HOM05D005118 ORTHO05D006038 9.5e-65 251.1 238 54.2
Thhalv10018973m.g Eutrema salsugineum HOM05D005118 ORTHO05D006038 3.6e-64 249.2 263 49.4
Lj2C139G10 Lonicera japonica HOM05D005118 ORTHO05D006038 8.1e-64 248.1 223 57.0
SGA_v2.0_scaffold31G12903 Striga asiatica HOM05D005118 ORTHO05D006038 3.1e-63 246.1 227 52.9
unitig_748.g8118 Utricularia gibba HOM05D005118 ORTHO05D006038 4.0e-63 245.7 272 46.7
AUR62037021 Chenopodium quinoa HOM05D005118 ORTHO05D006038 5.2e-63 245.4 250 52.8
Duzib093G2169 Durio zibethinus HOM05D005118 ORTHO05D006038 2.6e-62 243.0 224 54.0
Cc06_g05990 Coffea canephora HOM05D005118 ORTHO05D006038 4.9e-61 238.8 221 53.8
BolC5t33871H Brassica oleracea HOM05D005118 ORTHO05D006038 1.4e-60 237.3 268 50.0
Haze_12101 Corylus avellana HOM05D005118 ORTHO05D006038 1.4e-60 237.3 277 47.3
Sp3g13570 Schrenkiella parvula HOM05D005118 ORTHO05D006038 1.9e-60 236.9 267 50.2
SEGI_18237 Sequoiadendron giganteum HOM05D005118 ORTHO05D006038 1.9e-60 236.9 298 44.6
Potri.006G211300 Populus trichocarpa HOM05D005118 ORTHO05D006038 9.2e-60 234.6 185 62.2
Thhalv10021266m.g Eutrema salsugineum HOM05D005118 ORTHO05D006038 1.6e-59 233.8 270 48.5
Peaxi162Scf00096g00416 Petunia axillaris HOM05D005118 ORTHO05D006038 7.8e-59 231.5 273 44.7
Dinv21192 Davidia involucrata HOM05D005118 ORTHO05D006038 1.7e-58 230.3 229 55.0
AT2G02765 Arabidopsis thaliana HOM05D005118 ORTHO05D006038 2.8e-56 223.0 185 57.3
Rhsim03G0072000 Rhododendron simsii HOM05D005118 ORTHO05D006038 3.6e-56 222.6 207 57.5
Mapoly0006s0252 Marchantia polymorpha HOM05D005118 ORTHO05D006038 3.1e-55 219.5 276 46.0
AUR62017509 Chenopodium quinoa HOM05D005118 ORTHO05D006038 1.2e-54 217.6 274 44.5
Nitab4.5_0012129g0010 Nicotiana tabacum HOM05D005118 ORTHO05D006038 1.5e-54 217.2 278 45.7
C05p51840 Brassica napus HOM05D005118 ORTHO05D006038 9.9e-54 214.5 233 51.1
Hund01804 Selenicereus undatus HOM05D005118 ORTHO05D006038 1.3e-53 214.2 276 42.8
Manes.08G026600 Manihot esculenta HOM05D005118 ORTHO05D006038 4.9e-53 212.2 284 43.0
PGR004G0063 Punica granatum HOM05D005118 ORTHO05D006038 6.4e-53 211.8 275 45.8
Ah.08g210500 Amaranthus hybridus HOM05D000892 ORTHO05D009371 1.1e-52 211.1 274 44.9
BraA05t22230Z Brassica rapa HOM05D005118 ORTHO05D006038 1.3e-50 204.1 186 55.9
Potri.016G078400 Populus trichocarpa HOM05D005118 ORTHO05D006038 8.7e-50 201.4 164 58.5
AagrBONN_evm.TU.Sc2ySwM_340.158 Anthoceros agrestis HOM05D005118 ORTHO05D006038 1.1e-47 194.5 298 39.9
HPP92_018147 Vanilla planifolia HOM05D005118 ORTHO05D006038 1.4e-47 194.1 206 49.0
Pp3c5_18920 Physcomitrium patens HOM05D005118 ORTHO05D006038 3.4e-46 189.5 283 38.2
AL5G11970 Arabidopsis lyrata HOM05D005118 ORTHO05D006038 5.8e-46 188.7 200 47.5
BcaB06g29561 Brassica carinata HOM05D005118 ORTHO05D006038 9.3e-44 181.4 269 42.0
VMungo0720G2492 Vigna mungo HOM05D005118 ORTHO05D006038 2.3e-42 176.8 177 50.8
SMO144G0078 Selaginella moellendorffii HOM05D005118 ORTHO05D006038 3.0e-42 176.4 274 39.4
SMO118G0036 Selaginella moellendorffii HOM05D005118 ORTHO05D006038 1.9e-41 173.7 275 38.2
Cpa.g.sc5.3 Carica papaya HOM05D005118 ORTHO05D006038 2.1e-40 170.2 176 52.3
BcaC05g28982 Brassica carinata HOM05D005118 ORTHO05D006038 9.3e-36 154.8 240 40.8
MD14G1027400 Malus domestica HOM05D005118 ORTHO05D006038 6.2e-32 142.1 147 53.1
FvH4_4g11630 Fragaria vesca HOM05D005118 ORTHO05D006038 3.4e-30 136.3 215 43.3
FAN12G1659 Fragaria x ananassa HOM05D005118 ORTHO05D006038 6.5e-29 132.1 101 64.4
Sabra06G0126100 Salix brachista HOM05D005118 ORTHO05D006038 3.5e-27 126.3 180 43.3
VMungo0720G0644 Vigna mungo HOM05D005118 ORTHO05D006038 1.3e-26 124.4 110 58.2
PGSC0003DMG402008870 Solanum tuberosum HOM05D005118 ORTHO05D006038 6.3e-24 115.5 111 52.3
Glyma.10G074300 Glycine max HOM05D005118 ORTHO05D006038 8.2e-24 115.2 119 50.4
CDE02G4411 Ceratophyllum demersum HOM05D000588 ORTHO05D000637 3.4e-22 109.8 116 52.6
A05p34090 Brassica napus HOM05D005118 ORTHO05D006038 1.3e-21 107.8 88 56.8
PRCOL_00003909 Prasinoderma coloniale HOM05D005118 ORTHO05D006038 5.5e-20 102.4 262 30.9
TPR.G14778 Trifolium pratense HOM05D005118 ORTHO05D006038 1.2e-19 101.3 170 34.7
CARHR086010 Cardamine hirsuta HOM05D005118 ORTHO05D006038 9.4e-12 75.1 105 41.9
MCO02G431 Micromonas commoda HOM05D005118 ORTHO05D006038 1.2e-11 74.7 330 23.0
AUR62015050 Chenopodium quinoa HOM05D005118 ORTHO05D006038 7.9e-11 72.0 155 33.5
Carub.0003s1079 Capsella rubella HOM05D005118 ORTHO05D006038 3.9e-10 69.7 97 40.2
SEGI_32763 Sequoiadendron giganteum HOM05D005118 ORTHO05D006038 3.3e-09 66.6 73 49.3
Cre01.g018500 Chlamydomonas reinhardtii HOM05D005118 ORTHO05D006038 1.3e-08 64.7 171 32.2
BcaB06g25617 Brassica carinata HOM05D005118 ORTHO05D006038 2.8e-08 63.5 50 62.0
BcaB06g25618 Brassica carinata HOM05D005118 ORTHO05D006038 2.8e-08 63.5 50 62.0
Eucgr.J00256 Eucalyptus grandis HOM05D007318 ORTHO05D009289 4.8e-08 62.8 253 24.5
Lalb_Chr01g0010421 Lupinus albus HOM05D007318 ORTHO05D009289 6.3e-08 62.4 217 26.3
CsaV3_5G035390 Cucumis sativus L. HOM05D007318 ORTHO05D009289 8.2e-08 62.0 213 26.8
Glyma.15G117500 Glycine max HOM05D007318 ORTHO05D009289 8.2e-08 62.0 213 25.4
Lj6g0015884 Lotus japonicus HOM05D007318 ORTHO05D009289 1.8e-07 60.8 249 25.3
QL04p044887 Quercus lobata HOM05D007318 ORTHO05D009289 3.1e-07 60.1 212 25.5
ClCG05G021760 Citrullus lanatus HOM05D007318 ORTHO05D009289 9.1e-07 58.5 190 25.3
VMungo0720G2068 Vigna mungo HOM05D007318 ORTHO05D009289 9.1e-07 58.5 247 23.5
arahy.Tifrunner.gnm1.ann1.CJJ3HV Arachis hypogaea HOM05D007318 ORTHO05D009289 1.2e-06 58.2 250 23.2
arahy.Tifrunner.gnm1.ann1.CYVU5X Arachis hypogaea HOM05D007318 ORTHO05D009289 1.2e-06 58.2 250 23.2
Sed0005914 Sechium edule HOM05D007318 ORTHO05D009289 1.2e-06 58.2 213 25.8
CBR_g30340 Chara braunii HOM05D005118 ORTHO05D006038 1.5e-06 57.8 168 28.0
arahy.Tifrunner.gnm1.ann1.PPG341 Arachis hypogaea HOM05D007318 ORTHO05D009289 2.6e-06 57.0 250 22.8
Phvul.007G242433 Phaseolus vulgaris HOM05D007318 ORTHO05D009289 7.7e-06 55.5 212 25.5


User provided reference genes

Program Settings