Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0618G249 Amborella trichopoda HOM05D004384 ORTHO05D005797 0.0e+00 2317.3 1182 100.0
Nn3g21301 Nelumbo nucifera HOM05D004384 ORTHO05D005797 0.0e+00 1472.2 1187 64.8
Dinv04274 Davidia involucrata HOM05D004384 ORTHO05D005797 0.0e+00 1459.9 1182 63.9
TAR362G1140 Trochodendron aralioides HOM05D004384 ORTHO05D005797 0.0e+00 1452.2 1182 64.5
CiPaw.07G010400 Carya illinoinensis HOM05D004384 ORTHO05D005797 0.0e+00 1413.7 1183 61.5
Gohir.A13G171600 Gossypium hirsutum HOM05D004384 ORTHO05D005797 0.0e+00 1411.4 1186 60.8
Aqoxy2G03095 Aquilegia oxysepala HOM05D004384 ORTHO05D005797 0.0e+00 1410.6 1183 61.6
Duzib177G1205 Durio zibethinus HOM05D004384 ORTHO05D005797 0.0e+00 1407.9 1188 61.5
GSVIVG01021908001 Vitis vinifera HOM05D004384 ORTHO05D005797 0.0e+00 1406.7 1183 62.1
Potri.013G032100 Populus trichocarpa HOM05D004384 ORTHO05D005797 0.0e+00 1394.0 1183 60.7
Manes.09G159100 Manihot esculenta HOM05D004384 ORTHO05D005797 0.0e+00 1391.7 1178 60.8
Thecc.05G292400 Theobroma cacao HOM05D004384 ORTHO05D005797 0.0e+00 1389.8 1189 60.9
Cpa.g.sc117.32 Carica papaya HOM05D004384 ORTHO05D005797 0.0e+00 1387.9 1182 59.8
Eucgr.H04418 Eucalyptus grandis HOM05D004384 ORTHO05D005797 0.0e+00 1384.4 1183 60.7
Prupe.6G336100 Prunus persica HOM05D004384 ORTHO05D005797 0.0e+00 1383.6 1179 60.6
Cfa006495 Carpinus fangiana HOM05D004384 ORTHO05D005797 0.0e+00 1381.7 1187 61.2
Sc06g0003540 Simmondsia chinensis HOM05D004384 ORTHO05D005797 0.0e+00 1376.7 1185 60.1
Actinidia05750 Actinidia chinensis HOM05D004384 ORTHO05D005797 0.0e+00 1374.0 1182 60.1
MD12G1232900 Malus domestica HOM05D004384 ORTHO05D005797 0.0e+00 1373.2 1179 60.2
Hund07007 Selenicereus undatus HOM05D004384 ORTHO05D005797 0.0e+00 1373.2 1182 59.7
TWI56G1253 Tripterygium wilfordii HOM05D004384 ORTHO05D005797 0.0e+00 1372.8 1184 60.1
RcHm_v2.0_Chr3g0452661 Rosa chinensis HOM05D004384 ORTHO05D005797 0.0e+00 1372.1 1180 59.7
MD04G1216400 Malus domestica HOM05D004384 ORTHO05D005797 0.0e+00 1371.7 1183 60.3
Rhsim10G0110700 Rhododendron simsii HOM05D004384 ORTHO05D005797 0.0e+00 1370.9 1188 61.0
QL03p001130 Quercus lobata HOM05D004384 ORTHO05D005797 0.0e+00 1368.2 1181 61.0
CANSAT54G2523 Cannabis sativa HOM05D004384 ORTHO05D005797 0.0e+00 1364.4 1176 61.1
Nitab4.5_0000245g0070 Nicotiana tabacum HOM05D004384 ORTHO05D005797 0.0e+00 1362.8 1179 60.6
FAN05G3638 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1358.6 1180 59.6
FvH4_6g04110 Fragaria vesca HOM05D004384 ORTHO05D005797 0.0e+00 1358.2 1180 59.6
FAN09G2428 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1355.5 1180 59.3
FAN14G1587 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1355.5 1180 59.5
EL10Ac4g09231 Beta vulgaris HOM05D004384 ORTHO05D005797 0.0e+00 1355.1 1181 59.7
Gorai.013G122800 Gossypium raimondii HOM05D004384 ORTHO05D005797 0.0e+00 1355.1 1186 59.1
Solyc01g098170.3 Solanum lycopersicum HOM05D004384 ORTHO05D005797 0.0e+00 1354.7 1185 60.5
Cc02_g32190 Coffea canephora HOM05D004384 ORTHO05D005797 0.0e+00 1353.6 1180 59.3
CSS0010917 Camellia sinensis var. sinensis HOM05D004384 ORTHO05D005797 0.0e+00 1351.7 1159 61.0
FAN09G2922 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1350.9 1180 59.2
Peaxi162Scf00225g00421 Petunia axillaris HOM05D004384 ORTHO05D005797 0.0e+00 1349.7 1188 60.8
PGR004G0471 Punica granatum HOM05D004384 ORTHO05D005797 0.0e+00 1349.0 1187 59.3
Lalb_Chr04g0261021 Lupinus albus HOM05D004384 ORTHO05D005797 0.0e+00 1348.2 1181 60.3
FAN02G3203 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1343.6 1180 58.9
Ciclev10000072m.g Citrus clementina HOM05D004384 ORTHO05D005797 0.0e+00 1342.8 1146 60.7
FAN05G1088 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1342.4 1190 58.8
Lj1g0011638 Lotus japonicus HOM05D004384 ORTHO05D005797 0.0e+00 1342.0 1184 59.2
VMungo0540G2235 Vigna mungo HOM05D004384 ORTHO05D005797 0.0e+00 1340.1 1178 58.8
CAN.G134.202 Capsicum annuum HOM05D004384 ORTHO05D005797 0.0e+00 1338.2 1181 59.9
PSO170G1333 Papaver somniferum HOM05D004384 ORTHO05D005797 0.0e+00 1337.4 1179 59.5
THA.LOC104821698 Tarenaya hassleriana HOM05D004384 ORTHO05D005797 0.0e+00 1335.9 1182 58.0
Glyma.03G243400 Glycine max HOM05D004384 ORTHO05D005797 0.0e+00 1335.5 1193 58.8
Glyma.19G240700 Glycine max HOM05D004384 ORTHO05D005797 0.0e+00 1335.5 1180 59.3
Gohir.D13G109200 Gossypium hirsutum HOM05D004384 ORTHO05D005797 0.0e+00 1333.5 1161 59.3
Gorai.013G202700 Gossypium raimondii HOM05D004384 ORTHO05D005797 0.0e+00 1333.5 1186 58.3
Psat3g008440 Pisum sativum HOM05D004384 ORTHO05D005797 0.0e+00 1331.2 1178 59.3
Ca_09392_v3 Cicer arietinum L. HOM05D004384 ORTHO05D005797 0.0e+00 1329.3 1179 59.3
AUR62005028 Chenopodium quinoa HOM05D004384 ORTHO05D005797 0.0e+00 1327.0 1183 57.7
TPR.G6955 Trifolium pratense HOM05D004384 ORTHO05D005797 0.0e+00 1325.8 1173 59.1
Aa31LG11G8890 Aethionema arabicum HOM05D004384 ORTHO05D005797 0.0e+00 1322.8 1183 57.3
CsaV3_2G004460 Cucumis sativus L. HOM05D004384 ORTHO05D005797 0.0e+00 1318.5 1183 57.7
MSTRG.20437 Avicennia marina HOM05D004384 ORTHO05D005797 0.0e+00 1314.7 1177 57.9
Medtr7g114260 Medicago truncatula HOM05D004384 ORTHO05D005797 0.0e+00 1314.7 1176 57.7
C07p40520 Brassica napus HOM05D004384 ORTHO05D005797 0.0e+00 1311.2 1183 57.1
BolC7t44588H Brassica oleracea HOM05D004384 ORTHO05D005797 0.0e+00 1311.2 1183 57.1
BraA06t26690Z Brassica rapa HOM05D004384 ORTHO05D005797 0.0e+00 1309.3 1182 56.5
Sabra13G0030800 Salix brachista HOM05D004384 ORTHO05D005797 0.0e+00 1308.5 1141 59.0
CDE01G0361 Ceratophyllum demersum HOM05D004384 ORTHO05D005797 0.0e+00 1308.1 1177 58.9
A06p37710 Brassica napus HOM05D004384 ORTHO05D005797 0.0e+00 1306.2 1182 56.6
Thhalv10003536m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 0.0e+00 1303.1 1182 56.8
Gohir.D13G177400 Gossypium hirsutum HOM05D004384 ORTHO05D005797 0.0e+00 1303.1 1191 57.4
ClCG02G016280 Citrullus lanatus HOM05D004384 ORTHO05D005797 0.0e+00 1302.3 1186 57.3
Sp2g20420 Schrenkiella parvula HOM05D004384 ORTHO05D005797 0.0e+00 1296.6 1180 56.9
CARHR185780 Cardamine hirsuta HOM05D004384 ORTHO05D005797 0.0e+00 1294.3 1182 56.4
MELO3C004347.2 Cucumis melo HOM05D004384 ORTHO05D005797 0.0e+00 1291.6 1183 57.2
Migut.B01068 Erythranthe guttata HOM05D004384 ORTHO05D005797 0.0e+00 1290.4 1179 57.4
SalBow8G4829 Salvia bowleyana HOM05D004384 ORTHO05D005797 0.0e+00 1290.4 1181 57.3
DCAR_022275 Daucus carota HOM05D004384 ORTHO05D005797 0.0e+00 1290.0 1186 56.6
Carub.0006s2534 Capsella rubella HOM05D004384 ORTHO05D005797 0.0e+00 1282.7 1182 56.0
Sed0012875 Sechium edule HOM05D004384 ORTHO05D005797 0.0e+00 1282.7 1160 56.5
AL3G15430 Arabidopsis lyrata HOM05D004384 ORTHO05D005797 0.0e+00 1274.6 1172 56.0
ECA238G0831 Erigeron canadensis HOM05D004384 ORTHO05D005797 0.0e+00 1273.8 1179 55.3
Ah.06g192860 Amaranthus hybridus HOM05D004384 ORTHO05D005797 0.0e+00 1266.5 1181 56.2
HanXRQChr14g0446631 Helianthus annuus HOM05D004384 ORTHO05D005797 0.0e+00 1265.8 1180 54.7
AT3G05040 Arabidopsis thaliana HOM05D004384 ORTHO05D005797 0.0e+00 1259.2 1172 55.5
SGA_v2.0_scaffold36G14404 Striga asiatica HOM05D004384 ORTHO05D005797 0.0e+00 1259.2 1189 55.6
Nitab4.5_0010351g0010 Nicotiana tabacum HOM05D004384 ORTHO05D005797 0.0e+00 1256.5 1182 57.6
Oeu053262.1 Olea europaea HOM05D004384 ORTHO05D005797 0.0e+00 1255.4 1275 54.3
Zm00001eb341370 Zea mays HOM05D004384 ORTHO05D005797 0.0e+00 1255.4 1181 55.0
Carub.0003s0429 Capsella rubella HOM05D004384 ORTHO05D005797 0.0e+00 1251.5 1164 55.5
Lsat_1_v5_gn_2_64920 Lactuca sativa HOM05D004384 ORTHO05D005797 0.0e+00 1251.1 1176 55.4
Thhalv10022131m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 0.0e+00 1250.7 1159 55.7
Os01g0363900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 0.0e+00 1245.3 1181 54.6
arahy.Tifrunner.gnm1.ann1.KAQB8D Arachis hypogaea HOM05D004384 ORTHO05D005797 0.0e+00 1223.8 1092 58.0
COL.COLO4_13624 Corchorus olitorius HOM05D004384 ORTHO05D005797 0.0e+00 1211.4 1183 55.5
AUR62000939 Chenopodium quinoa HOM05D004384 ORTHO05D005797 0.0e+00 1204.9 1147 55.2
arahy.Tifrunner.gnm1.ann1.RD3H93 Arachis hypogaea HOM05D004384 ORTHO05D005797 0.0e+00 1183.3 1177 53.8
Lj7A481G46 Lonicera japonica HOM05D004384 ORTHO05D005797 0.0e+00 1168.3 998 61.3
vmacro05244 Vaccinium macrocarpon HOM05D004384 ORTHO05D005797 0.0e+00 1162.1 1305 51.3
Phvul.006G097400 Phaseolus vulgaris HOM05D004384 ORTHO05D005797 0.0e+00 1144.8 993 59.6
Sp3g03870 Schrenkiella parvula HOM05D004384 ORTHO05D005797 0.0e+00 1142.9 1147 52.6
BcaNung04267 Brassica carinata HOM05D004384 ORTHO05D005797 0.0e+00 1136.3 1188 52.5
Aqoxy179s001 Aquilegia oxysepala HOM05D004384 ORTHO05D005797 0.0e+00 1097.0 1056 57.0
unitig_0.g2222 Utricularia gibba HOM05D004384 ORTHO05D005797 0.0e+00 1095.1 1196 50.5
Pp3c11_26800 Physcomitrium patens HOM05D004384 ORTHO05D005797 3.5e-265 919.1 1188 43.8
Sopen01g041740 Solanum pennellii HOM05D004384 ORTHO05D005797 1.6e-262 910.2 782 60.9
CARHR079360 Cardamine hirsuta HOM05D004384 ORTHO05D005797 3.1e-261 906.0 866 53.7
Pp3c7_3740 Physcomitrium patens HOM05D004384 ORTHO05D005797 1.5e-260 903.7 1185 42.9
Atru.chr2.639 Acer truncatum HOM05D004384 ORTHO05D005797 4.4e-260 902.1 935 52.5
Mapoly0015s0189 Marchantia polymorpha HOM05D004384 ORTHO05D005797 4.6e-257 892.1 1226 41.6
Medtr1g063040 Medicago truncatula HOM05D004384 ORTHO05D005797 4.8e-254 882.1 1163 45.3
Haze_04294 Corylus avellana HOM05D004384 ORTHO05D005797 9.0e-253 877.9 840 56.8
SMO145G0253 Selaginella moellendorffii HOM05D004384 ORTHO05D005797 3.2e-234 816.2 1183 39.5
SEGI_22518 Sequoiadendron giganteum HOM05D004384 ORTHO05D005797 4.8e-214 749.2 768 52.1
BolC1t05723H Brassica oleracea HOM05D004384 ORTHO05D005797 1.2e-212 744.6 1164 39.9
BcaB04g21343 Brassica carinata HOM05D004384 ORTHO05D005797 7.4e-207 725.3 1151 39.4
BNapus_Darmor_BZH_scaffold_78p01040 Brassica napus HOM05D004384 ORTHO05D005797 3.1e-205 719.9 1157 38.9
BraA01t04501Z Brassica rapa HOM05D004384 ORTHO05D005797 1.6e-204 717.6 1157 38.9
AagrBONN_evm.TU.Sc2ySwM_340.422 Anthoceros agrestis HOM05D004384 ORTHO05D005797 5.0e-203 712.6 1202 36.4
Sopen00g006580 Solanum pennellii HOM05D004384 ORTHO05D005797 1.8e-200 704.1 642 58.4
HPP92_011308 Vanilla planifolia HOM05D004384 ORTHO05D005797 6.8e-184 649.0 579 59.1
BcaC05g29989 Brassica carinata HOM05D004384 ORTHO05D005797 6.4e-174 615.9 1049 38.3
HPP92_011287 Vanilla planifolia HOM05D004384 ORTHO05D005797 5.6e-170 602.8 602 52.8
HPP92_011286 Vanilla planifolia HOM05D004384 ORTHO05D005797 1.1e-168 598.6 548 57.5
Actinidia30910 Actinidia chinensis HOM05D004384 ORTHO05D005797 3.4e-167 593.6 601 53.9
HPP92_011309 Vanilla planifolia HOM05D004384 ORTHO05D005797 7.3e-138 496.1 489 54.4
Gohir.A13G106433 Gossypium hirsutum HOM05D004384 ORTHO05D005797 1.4e-133 481.9 425 59.3
Haze_04301 Corylus avellana HOM05D004384 ORTHO05D005797 6.0e-132 476.5 473 55.6
PGSC0003DMG400022491 Solanum tuberosum HOM05D004384 ORTHO05D005797 1.2e-103 382.5 322 62.1
Sopen01g041750 Solanum pennellii HOM05D004384 ORTHO05D005797 3.9e-91 340.9 298 60.7
MCO07G327 Micromonas commoda HOM05D004384 ORTHO05D005797 5.5e-85 320.5 1328 24.0
SEGI_23591 Sequoiadendron giganteum HOM05D004384 ORTHO05D005797 5.0e-78 297.4 263 56.7
Sopen00g006590 Solanum pennellii HOM05D004384 ORTHO05D005797 8.0e-60 236.9 211 57.8
Glyma.02G183700 Glycine max HOM05D004384 ORTHO05D005797 2.9e-57 228.4 220 56.8
Lj7C481T10 Lonicera japonica HOM05D004384 ORTHO05D005797 2.0e-55 222.2 196 61.2
Os11g0513900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 1.7e-46 192.6 486 29.2
Os11g0518900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 8.1e-44 183.7 452 30.8
arahy.Tifrunner.gnm1.ann1.2MX35J Arachis hypogaea HOM05D000319 ORTHO05D002646 1.0e-38 166.8 215 46.5
CSS0044605 Camellia sinensis var. sinensis HOM05D004384 ORTHO05D005797 6.8e-35 154.1 109 67.0
Cre10.g420400 Chlamydomonas reinhardtii HOM05D004384 ORTHO05D005797 3.0e-30 138.7 808 21.9
Ciclev10003957m.g Citrus clementina HOM05D004384 ORTHO05D005797 4.8e-20 104.8 95 55.8
BcaC03g17773 Brassica carinata HOM05D004384 ORTHO05D005797 7.1e-16 90.9 90 54.4
Os11g0517800 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D299849 4.6e-15 88.2 213 31.5
BcaNung06429 Brassica carinata HOM05D004384 ORTHO05D005797 1.8e-14 86.3 79 54.4
C02p57890 Brassica napus HOM05D004384 ORTHO05D005797 5.1e-14 84.7 67 65.7
BolC2t11857H Brassica oleracea HOM05D004384 ORTHO05D005797 3.7e-12 78.6 82 54.9
Thhalv10011164m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 6.2e-12 77.8 76 51.3
BraA01t04627Z Brassica rapa HOM05D004384 ORTHO05D005797 6.9e-11 74.3 82 47.6
Lsat_1_v5_gn_5_147500 Lactuca sativa HOM05D001610 ORTHO05D005797 5.8e-10 71.2 75 52.0
CAN.G124.14 Capsicum annuum HOM05D004384 ORTHO05D022156 1.0e-09 70.5 47 76.6
CAN.G37.9 Capsicum annuum HOM05D001673 ORTHO05D013418 1.0e-09 70.5 47 76.6
A05p42530 Brassica napus HOM05D004384 ORTHO05D005797 2.2e-09 69.3 74 52.7
BraA05t22999Z Brassica rapa HOM05D004384 ORTHO05D005797 2.2e-09 69.3 74 51.4
Os11g0519500 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D300109 3.2e-08 65.5 323 26.3
FvH4_6g04501 Fragaria vesca HOM05D004384 ORTHO05D005797 7.9e-07 60.8 45 68.9
MBI18_g14725_MAGBIO Magnolia biondii HOM05D004384 ORTHO05D005797 1.8e-06 59.7 41 68.3
Cre10.g420250 Chlamydomonas reinhardtii HOM05D004384 ORTHO05D005797 6.7e-06 57.8 115 29.6


User provided reference genes

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