Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0618G246 Amborella trichopoda HOM05D004868 ORTHO05D006030 1.7e-199 699.1 354 100.0
Ca_13816_v3 Cicer arietinum L. HOM05D004868 ORTHO05D006030 9.9e-123 444.1 263 78.3
TPR.G7590 Trifolium pratense HOM05D004868 ORTHO05D006030 9.9e-123 444.1 263 78.7
MBI18_g14729_MAGBIO Magnolia biondii HOM05D004868 ORTHO05D006030 1.7e-122 443.4 263 77.6
Medtr4g025410 Medicago truncatula HOM05D004868 ORTHO05D006030 3.8e-122 442.2 263 77.6
arahy.Tifrunner.gnm1.ann1.VSGL27 Arachis hypogaea HOM05D004868 ORTHO05D006030 1.4e-121 440.3 264 78.0
arahy.Tifrunner.gnm1.ann1.WET4Y7 Arachis hypogaea HOM05D004868 ORTHO05D006030 3.2e-121 439.1 264 78.0
PGR004G1913 Punica granatum HOM05D004868 ORTHO05D006030 3.2e-121 439.1 263 78.7
Gohir.A11G257000 Gossypium hirsutum HOM05D004868 ORTHO05D006030 4.2e-121 438.7 264 78.8
TAR636G1948 Trochodendron aralioides HOM05D004868 ORTHO05D006030 5.4e-121 438.3 263 78.7
MD12G1234100 Malus domestica HOM05D004868 ORTHO05D006030 9.3e-121 437.6 264 77.3
Potri.005G046300 Populus trichocarpa HOM05D004868 ORTHO05D006030 9.3e-121 437.6 263 78.3
Phvul.010G080900 Phaseolus vulgaris HOM05D004868 ORTHO05D006030 1.2e-120 437.2 264 78.0
TPR.G39359 Trifolium pratense HOM05D004868 ORTHO05D006030 1.2e-120 437.2 263 77.6
Gorai.007G286600 Gossypium raimondii HOM05D004868 ORTHO05D006030 2.1e-120 436.4 264 78.4
QL03p000170 Quercus lobata HOM05D004868 ORTHO05D006030 2.1e-120 436.4 263 77.9
QL03p000506 Quercus lobata HOM05D004868 ORTHO05D006030 2.1e-120 436.4 264 77.3
TWI36G0026 Tripterygium wilfordii HOM05D004868 ORTHO05D006030 2.1e-120 436.4 264 76.5
Ciclev10001724m.g Citrus clementina HOM05D004868 ORTHO05D006030 2.7e-120 436.0 262 78.6
Eucgr.H04401 Eucalyptus grandis HOM05D004868 ORTHO05D006030 2.7e-120 436.0 259 78.8
Hma1.2p1_0332F.1_g127880 Hydrangea macrophylla HOM05D004868 ORTHO05D006030 4.6e-120 435.3 263 77.2
Duzib177G0825 Durio zibethinus HOM05D004868 ORTHO05D006030 1.0e-119 434.1 264 78.4
Potri.013G034000 Populus trichocarpa HOM05D004868 ORTHO05D006030 1.0e-119 434.1 330 66.1
Haze_04309 Corylus avellana HOM05D004868 ORTHO05D006030 1.3e-119 433.7 264 76.5
TWI12G1223 Tripterygium wilfordii HOM05D004868 ORTHO05D006030 1.3e-119 433.7 264 75.8
DCAR_022833 Daucus carota HOM05D004868 ORTHO05D006030 1.8e-119 433.3 263 77.2
Gohir.D11G266800 Gossypium hirsutum HOM05D004868 ORTHO05D006030 1.8e-119 433.3 264 78.0
AUR62005015 Chenopodium quinoa HOM05D004868 ORTHO05D006030 2.3e-119 433.0 260 80.0
MD04G1217100 Malus domestica HOM05D004868 ORTHO05D006030 3.0e-119 432.6 264 76.9
Prupe.6G337200 Prunus persica HOM05D004868 ORTHO05D006030 3.9e-119 432.2 263 77.2
Ah.04g160130 Amaranthus hybridus HOM05D004868 ORTHO05D006030 5.1e-119 431.8 260 78.8
Glyma.03G028300 Glycine max HOM05D004868 ORTHO05D006030 6.7e-119 431.4 263 76.8
HPP92_011336 Vanilla planifolia HOM05D004868 ORTHO05D006030 1.1e-118 430.6 259 74.5
Manes.09G157900 Manihot esculenta HOM05D004868 ORTHO05D006030 1.5e-118 430.3 261 77.4
Thecc.05G291500 Theobroma cacao HOM05D004868 ORTHO05D006030 1.5e-118 430.3 264 78.0
HPP92_016882 Vanilla planifolia HOM05D004868 ORTHO05D006030 1.5e-118 430.3 258 75.2
Ah.06g192760 Amaranthus hybridus HOM05D004868 ORTHO05D006030 2.5e-118 429.5 260 78.5
Lj3g0018370 Lotus japonicus HOM05D004868 ORTHO05D006030 3.3e-118 429.1 263 76.8
CSS0010529 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 4.3e-118 428.7 263 77.2
Actinidia33836 Actinidia chinensis HOM05D004868 ORTHO05D006030 5.6e-118 428.3 262 76.7
CANSAT54G1013 Cannabis sativa HOM05D004868 ORTHO05D006030 5.6e-118 428.3 261 77.0
Glyma.01G139000 Glycine max HOM05D004868 ORTHO05D006030 5.6e-118 428.3 262 77.1
Rhsim05G0148800 Rhododendron simsii HOM05D004868 ORTHO05D006030 5.6e-118 428.3 263 76.8
Nitab4.5_0002361g0200 Nicotiana tabacum HOM05D004868 ORTHO05D006030 9.6e-118 427.6 260 77.7
Hund07000 Selenicereus undatus HOM05D004868 ORTHO05D006030 9.6e-118 427.6 285 73.0
Solyc01g098040.3 Solanum lycopersicum HOM05D004868 ORTHO05D006030 9.6e-118 427.6 260 77.7
CSS0000773 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 1.3e-117 427.2 263 76.8
CSS0028974 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 1.3e-117 427.2 262 77.5
EL10Ac4g09208 Beta vulgaris HOM05D004868 ORTHO05D006030 1.6e-117 426.8 260 77.3
Sopen01g041620 Solanum pennellii HOM05D004868 ORTHO05D006030 1.6e-117 426.8 260 77.7
Nitab4.5_0002840g0160 Nicotiana tabacum HOM05D004868 ORTHO05D006030 2.1e-117 426.4 260 77.7
RcHm_v2.0_Chr3g0452511 Rosa chinensis HOM05D004868 ORTHO05D006030 2.1e-117 426.4 264 75.8
PGSC0003DMG400022466 Solanum tuberosum HOM05D004868 ORTHO05D006030 2.1e-117 426.4 260 77.3
PSO170G6220 Papaver somniferum HOM05D004868 ORTHO05D006030 2.8e-117 426.0 262 76.7
PSO210G5882 Papaver somniferum HOM05D004868 ORTHO05D006030 2.8e-117 426.0 262 76.7
ECA246G2619 Erigeron canadensis HOM05D004868 ORTHO05D006030 4.8e-117 425.2 260 76.2
Sabra05G0042300 Salix brachista HOM05D004868 ORTHO05D006030 4.8e-117 425.2 264 75.8
C03p41370 Brassica napus HOM05D004868 ORTHO05D006030 6.2e-117 424.9 261 75.9
FAN02G0279 Fragaria x ananassa HOM05D004868 ORTHO05D006030 8.1e-117 424.5 264 75.8
FAN09G4706 Fragaria x ananassa HOM05D004868 ORTHO05D006030 1.1e-116 424.1 263 76.0
GSVIVG01021894001 Vitis vinifera HOM05D004868 ORTHO05D006030 1.1e-116 424.1 238 81.9
BcaC01g04334 Brassica carinata HOM05D004868 ORTHO05D006030 1.4e-116 423.7 261 75.9
BolC3t16420H Brassica oleracea HOM05D004868 ORTHO05D006030 1.4e-116 423.7 261 75.5
FAN14G3773 Fragaria x ananassa HOM05D004868 ORTHO05D006030 1.4e-116 423.7 263 76.0
CSS0039857 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 1.8e-116 423.3 262 76.7
FAN05G2179 Fragaria x ananassa HOM05D004868 ORTHO05D006030 1.8e-116 423.3 264 75.4
FAN05G5662 Fragaria x ananassa HOM05D004868 ORTHO05D006030 1.8e-116 423.3 264 75.4
Aqoxy5G00612 Aquilegia oxysepala HOM05D004868 ORTHO05D006030 2.4e-116 422.9 260 76.9
BcaB04g21374 Brassica carinata HOM05D004868 ORTHO05D006030 2.4e-116 422.9 261 75.5
A03p33990 Brassica napus HOM05D004868 ORTHO05D006030 2.4e-116 422.9 261 75.5
Cfa006482 Carpinus fangiana HOM05D004868 ORTHO05D006030 2.4e-116 422.9 261 75.9
BraA03t12574Z Brassica rapa HOM05D004868 ORTHO05D006030 3.1e-116 422.5 261 75.5
HanXRQChr05g0161431 Helianthus annuus HOM05D004868 ORTHO05D006030 3.1e-116 422.5 261 76.2
Lalb_Chr13g0291821 Lupinus albus HOM05D004868 ORTHO05D006030 3.1e-116 422.5 261 76.2
CAN.G134.187 Capsicum annuum HOM05D004868 ORTHO05D006030 5.3e-116 421.8 260 76.2
Sed0014615 Sechium edule HOM05D004868 ORTHO05D006030 5.3e-116 421.8 264 75.4
Thhalv10021106m.g Eutrema salsugineum HOM05D004868 ORTHO05D006030 1.2e-115 420.6 261 75.1
FvH4_6g03940 Fragaria vesca HOM05D004868 ORTHO05D006030 1.2e-115 420.6 263 75.7
Lalb_Chr12g0208121 Lupinus albus HOM05D004868 ORTHO05D006030 1.2e-115 420.6 261 75.5
Migut.B00327 Erythranthe guttata HOM05D004868 ORTHO05D006030 1.5e-115 420.2 262 77.1
Atru.chr2.656 Acer truncatum HOM05D004868 ORTHO05D006030 2.0e-115 419.9 261 75.9
Sp3g03920 Schrenkiella parvula HOM05D004868 ORTHO05D006030 2.0e-115 419.9 261 74.7
SalBow2G0736 Salvia bowleyana HOM05D004868 ORTHO05D006030 3.4e-115 419.1 260 75.8
Carub.0003s0434 Capsella rubella HOM05D004868 ORTHO05D006030 4.5e-115 418.7 261 74.7
Cc02_g31280 Coffea canephora HOM05D004868 ORTHO05D006030 4.5e-115 418.7 264 75.0
HanXRQChr14g0447091 Helianthus annuus HOM05D004868 ORTHO05D006030 5.8e-115 418.3 261 75.5
CARHR185710 Cardamine hirsuta HOM05D004868 ORTHO05D006030 1.7e-114 416.8 262 74.0
COL.COLO4_13636 Corchorus olitorius HOM05D004868 ORTHO05D006030 1.7e-114 416.8 260 77.3
Lsat_1_v5_gn_9_40320 Lactuca sativa HOM05D004868 ORTHO05D006030 1.7e-114 416.8 261 74.3
Oeu012475.1 Olea europaea HOM05D004868 ORTHO05D006030 2.9e-114 416.0 260 75.8
CiPaw.07G009000 Carya illinoinensis HOM05D004868 ORTHO05D006030 4.9e-114 415.2 264 75.0
CiPaw.08G177900 Carya illinoinensis HOM05D004868 ORTHO05D006030 4.9e-114 415.2 264 75.0
Lj9A672G84 Lonicera japonica HOM05D004868 ORTHO05D006030 8.4e-114 414.5 238 79.0
AL3G15480 Arabidopsis lyrata HOM05D004868 ORTHO05D006030 1.4e-113 413.7 261 73.9
ClCG03G010920 Citrullus lanatus HOM05D004868 ORTHO05D006030 1.9e-113 413.3 264 75.0
MSTRG.13789 Avicennia marina HOM05D004868 ORTHO05D006030 2.4e-113 412.9 260 75.0
MELO3C010076.2 Cucumis melo HOM05D004868 ORTHO05D006030 3.2e-113 412.5 263 74.9
SGA_v2.0_scaffold146G36132 Striga asiatica HOM05D004868 ORTHO05D006030 4.2e-113 412.1 261 75.5
BraA06t26695Z Brassica rapa HOM05D004868 ORTHO05D006030 5.5e-113 411.8 261 73.9
AT3G05100 Arabidopsis thaliana HOM05D004868 ORTHO05D006030 7.1e-113 411.4 261 73.6
A05p42480 Brassica napus HOM05D004868 ORTHO05D006030 9.3e-113 411.0 260 73.5
C05p62140 Brassica napus HOM05D004868 ORTHO05D006030 9.3e-113 411.0 262 73.3
BolC5t34872H Brassica oleracea HOM05D004868 ORTHO05D006030 9.3e-113 411.0 262 73.3
BraA05t23004Z Brassica rapa HOM05D004868 ORTHO05D006030 9.3e-113 411.0 260 73.5
Aa31LG5G15350 Aethionema arabicum HOM05D004868 ORTHO05D006030 1.2e-112 410.6 261 72.8
BcaNung04260 Brassica carinata HOM05D004868 ORTHO05D006030 1.2e-112 410.6 344 59.6
Carub.0006s2543 Capsella rubella HOM05D004868 ORTHO05D006030 1.2e-112 410.6 262 74.0
CsaV3_1G044760 Cucumis sativus L. HOM05D004868 ORTHO05D006030 1.6e-112 410.2 263 73.8
Sp2g20350 Schrenkiella parvula HOM05D004868 ORTHO05D006030 2.1e-112 409.8 261 73.6
Aa31LG11G8840 Aethionema arabicum HOM05D004868 ORTHO05D006030 7.9e-112 407.9 261 73.9
C07p40470 Brassica napus HOM05D004868 ORTHO05D006030 7.9e-112 407.9 344 59.3
BolC7t44582H Brassica oleracea HOM05D004868 ORTHO05D006030 7.9e-112 407.9 344 59.3
Peaxi162Scf00225g00143 Petunia axillaris HOM05D004868 ORTHO05D006030 7.9e-112 407.9 254 76.4
SEGI_16580 Sequoiadendron giganteum HOM05D004868 ORTHO05D006030 7.9e-112 407.9 267 72.7
VMungo0331G1201 Vigna mungo HOM05D004868 ORTHO05D006030 7.9e-112 407.9 260 75.0
Thhalv10004543m.g Eutrema salsugineum HOM05D004868 ORTHO05D006030 1.0e-111 407.5 263 72.6
Os07g0667400 Oryza sativa ssp. japonica HOM05D004868 ORTHO05D006030 1.0e-111 407.5 260 74.6
Sed0017257 Sechium edule HOM05D004868 ORTHO05D006030 2.3e-111 406.4 264 73.1
Zm00001eb110980 Zea mays HOM05D004868 ORTHO05D006030 2.3e-111 406.4 261 73.9
AUR62000953 Chenopodium quinoa HOM05D004868 ORTHO05D006030 3.0e-111 406.0 230 83.9
MSTRG.12666 Avicennia marina HOM05D004868 ORTHO05D006030 6.7e-111 404.8 260 74.2
BcaNung04261 Brassica carinata HOM05D004868 ORTHO05D006030 5.6e-110 401.7 261 72.4
Sabra13G0033200 Salix brachista HOM05D004868 ORTHO05D006030 9.0e-108 394.4 232 79.7
Psat7g231080 Pisum sativum HOM05D004868 ORTHO05D006030 7.6e-107 391.3 217 81.1
Cpa.g.sc117.39 Carica papaya HOM05D004868 ORTHO05D006030 2.9e-106 389.4 219 81.7
Nn4g26018 Nelumbo nucifera HOM05D004868 ORTHO05D006030 1.9e-105 386.7 215 81.9
Dinv02605 Davidia involucrata HOM05D004868 ORTHO05D006030 2.5e-105 386.3 220 80.5
Lj7C479T1 Lonicera japonica HOM05D004868 ORTHO05D006030 2.7e-104 382.9 216 81.0
vmacro05392 Vaccinium macrocarpon HOM05D004868 ORTHO05D006030 1.0e-103 380.9 227 78.4
unitig_8.g3689 Utricularia gibba HOM05D004868 ORTHO05D006030 9.7e-102 374.4 260 65.8
AagrBONN_evm.TU.Sc2ySwM_344.3690 Anthoceros agrestis HOM05D004868 ORTHO05D006030 2.0e-99 366.7 262 66.4
Dinv02602 Davidia involucrata HOM05D004868 ORTHO05D006030 2.0e-99 366.7 208 81.7
SMO203G0024 Selaginella moellendorffii HOM05D004868 ORTHO05D006030 3.8e-98 362.5 259 63.3
SHI18309 Sapria himalayana HOM05D004868 ORTHO05D006030 2.5e-97 359.8 217 75.6
Pp3c9_1110 Physcomitrium patens HOM05D004868 ORTHO05D006030 5.5e-89 332.0 261 60.5
Oeu027042.1 Olea europaea HOM05D004868 ORTHO05D006030 2.6e-83 313.2 229 67.2
CDE08G0242 Ceratophyllum demersum HOM05D004868 ORTHO05D006030 3.3e-78 296.2 175 77.7
Cpa.g.c47757 Carica papaya HOM05D004868 ORTHO05D006030 1.4e-71 274.2 154 82.5
Dinv17742 Davidia involucrata HOM05D004868 ORTHO05D006030 2.3e-71 273.5 151 84.1
BcaC05g29994 Brassica carinata HOM05D004868 ORTHO05D006030 2.0e-67 260.4 214 62.1
TAR365G1069 Trochodendron aralioides HOM05D004868 ORTHO05D006030 2.2e-66 256.9 180 70.6
HPP92_028573 Vanilla planifolia HOM05D004868 ORTHO05D006030 4.2e-57 226.1 146 70.5
Nn3g21303 Nelumbo nucifera HOM05D004868 ORTHO05D006030 5.5e-57 225.7 146 72.6
Sc09g0003690 Simmondsia chinensis HOM05D004868 ORTHO05D006030 2.8e-56 223.4 149 71.8
CARHR079420 Cardamine hirsuta HOM05D004868 ORTHO05D006030 3.6e-56 223.0 150 72.7
CDE02G4194 Ceratophyllum demersum HOM05D001090 ORTHO05D002687 6.8e-55 218.8 127 78.7
A06p37760 Brassica napus HOM05D004868 ORTHO05D006030 7.5e-54 215.3 142 72.5
BcaB04g19280 Brassica carinata HOM05D004868 ORTHO05D006030 1.4e-28 131.3 206 41.7
BolC1t05715H Brassica oleracea HOM05D004868 ORTHO05D006030 7.8e-11 72.4 49 61.2
Lsat_1_v5_gn_5_121600 Lactuca sativa HOM05D004868 ORTHO05D027635 1.0e-10 72.0 82 47.6
SHI18307 Sapria himalayana HOM05D004868 ORTHO05D027635 2.0e-06 57.8 60 51.7


User provided reference genes

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