Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0618G206 Amborella trichopoda HOM05D006499 ORTHO05D007874 1.3e-111 406.4 198 100.0
TAR622G1217 Trochodendron aralioides HOM05D006499 ORTHO05D007874 1.9e-75 286.2 197 69.5
MBI06_g20294_MAGBIO Magnolia biondii HOM05D006499 ORTHO05D007874 1.1e-73 280.4 188 70.7
Nn4g24968 Nelumbo nucifera HOM05D006499 ORTHO05D007874 6.9e-73 277.7 189 69.3
Aqoxy3G00285 Aquilegia oxysepala HOM05D006499 ORTHO05D007874 9.0e-73 277.3 192 66.7
Lsat_1_v5_gn_8_80081 Lactuca sativa HOM05D006499 ORTHO05D007874 1.3e-71 273.5 194 67.5
Rhsim05G0006600 Rhododendron simsii HOM05D006499 ORTHO05D007874 2.9e-71 272.3 193 65.8
Haze_11761 Corylus avellana HOM05D006499 ORTHO05D007874 1.9e-70 269.6 186 68.8
Cfa008745 Carpinus fangiana HOM05D006499 ORTHO05D007874 4.2e-70 268.5 186 68.8
Nitab4.5_0000069g0350 Nicotiana tabacum HOM05D006499 ORTHO05D007874 4.2e-70 268.5 198 64.6
HPP92_005057 Vanilla planifolia HOM05D006499 ORTHO05D007874 4.2e-70 268.5 188 64.9
Oeu012342.1 Olea europaea HOM05D006499 ORTHO05D007874 9.3e-70 267.3 188 66.0
RcHm_v2.0_Chr4g0446811 Rosa chinensis HOM05D006499 ORTHO05D007874 4.6e-69 265.0 193 66.3
Cc02_g20760 Coffea canephora HOM05D006499 ORTHO05D007874 6.0e-69 264.6 195 63.6
vmacro04318 Vaccinium macrocarpon HOM05D006499 ORTHO05D007874 6.0e-69 264.6 189 65.6
Nitab4.5_0004301g0030 Nicotiana tabacum HOM05D006499 ORTHO05D007874 7.9e-69 264.2 198 63.1
MSTRG.12232 Avicennia marina HOM05D006499 ORTHO05D007874 3.0e-68 262.3 189 64.6
DCAR_026894 Daucus carota HOM05D006499 ORTHO05D007874 3.9e-68 261.9 189 63.5
CiPaw.06G061000 Carya illinoinensis HOM05D006499 ORTHO05D007874 8.7e-68 260.8 194 64.4
Prupe.1G348500 Prunus persica HOM05D006499 ORTHO05D007874 1.1e-67 260.4 191 66.0
Actinidia13714 Actinidia chinensis HOM05D006499 ORTHO05D007874 1.5e-67 260.0 186 65.6
Potri.003G003300 Populus trichocarpa HOM05D006499 ORTHO05D007874 1.9e-67 259.6 198 63.1
QL03p017736 Quercus lobata HOM05D006499 ORTHO05D007874 4.3e-67 258.5 192 64.6
QL03p017519 Quercus lobata HOM05D006499 ORTHO05D007874 7.4e-67 257.7 192 64.6
Sopen01g003460 Solanum pennellii HOM05D006499 ORTHO05D007874 7.4e-67 257.7 195 62.1
Cpa.g.sc92.93 Carica papaya HOM05D006499 ORTHO05D007874 9.6e-67 257.3 190 65.3
Migut.H01291 Erythranthe guttata HOM05D006499 ORTHO05D007874 3.7e-66 255.4 189 61.9
Solyc01g007920.2 Solanum lycopersicum HOM05D006499 ORTHO05D007874 3.7e-66 255.4 195 61.0
MD16G1003500 Malus domestica HOM05D006499 ORTHO05D007874 8.1e-66 254.2 184 65.2
Manes.15G079500 Manihot esculenta HOM05D006499 ORTHO05D007874 8.1e-66 254.2 191 63.4
BcaB07g29862 Brassica carinata HOM05D006499 ORTHO05D007874 1.1e-65 253.8 200 61.5
Glyma.09G283200 Glycine max HOM05D006499 ORTHO05D007874 1.1e-65 253.8 188 64.4
PGSC0003DMG400016411 Solanum tuberosum HOM05D006499 ORTHO05D007874 1.1e-65 253.8 194 61.9
Peaxi162Scf00021g01915 Petunia axillaris HOM05D006499 ORTHO05D007874 2.4e-65 252.7 198 61.1
SMO116G0488 Selaginella moellendorffii HOM05D006499 ORTHO05D007874 5.3e-65 251.5 189 64.0
CANSAT01G2706 Cannabis sativa HOM05D006499 ORTHO05D007874 6.9e-65 251.1 193 63.7
ECA236G1709 Erigeron canadensis HOM05D006499 ORTHO05D007874 1.2e-64 250.4 192 63.5
FAN07G1092 Fragaria x ananassa HOM05D006499 ORTHO05D007874 1.2e-64 250.4 184 65.8
Sed0001124 Sechium edule HOM05D006499 ORTHO05D007874 1.2e-64 250.4 186 63.4
Thecc.02G158700 Theobroma cacao HOM05D006499 ORTHO05D007874 1.2e-64 250.4 193 64.2
Thhalv10005281m.g Eutrema salsugineum HOM05D006499 ORTHO05D007874 1.5e-64 250.0 186 63.4
Lalb_Chr04g0258971 Lupinus albus HOM05D006499 ORTHO05D007874 1.5e-64 250.0 188 62.2
Sp2g23920 Schrenkiella parvula HOM05D006499 ORTHO05D007874 1.5e-64 250.0 186 63.4
CsaV3_5G006120 Cucumis sativus L. HOM05D000045 ORTHO05D007874 2.0e-64 249.6 191 62.8
THA.LOC104800852 Tarenaya hassleriana HOM05D006499 ORTHO05D007874 2.0e-64 249.6 195 63.6
Aa31LG11G2680 Aethionema arabicum HOM05D006499 ORTHO05D007874 2.6e-64 249.2 187 64.7
BraA02t09053Z Brassica rapa HOM05D006499 ORTHO05D007874 3.4e-64 248.8 192 62.5
Lj6P712T24 Lonicera japonica HOM05D006499 ORTHO05D007874 5.8e-64 248.1 168 68.5
Psat6g099520 Pisum sativum HOM05D006499 ORTHO05D007874 5.8e-64 248.1 190 62.1
arahy.Tifrunner.gnm1.ann1.U0P7JC Arachis hypogaea HOM05D000717 ORTHO05D000555 2.2e-63 246.1 190 60.0
BcaC03g18032 Brassica carinata HOM05D006499 ORTHO05D007874 2.2e-63 246.1 192 62.0
C02p60950 Brassica napus HOM05D006499 ORTHO05D007874 2.2e-63 246.1 192 62.0
BolC2t12145H Brassica oleracea HOM05D006499 ORTHO05D007874 2.2e-63 246.1 192 62.0
FAN12G4256 Fragaria x ananassa HOM05D006499 ORTHO05D007874 2.2e-63 246.1 177 67.8
Lj6P717T75 Lonicera japonica HOM05D006499 ORTHO05D007874 2.2e-63 246.1 168 67.9
SGA_v2.0_scaffold49G18416 Striga asiatica HOM05D006499 ORTHO05D007874 2.2e-63 246.1 198 60.6
A02p41090 Brassica napus HOM05D006499 ORTHO05D007874 2.9e-63 245.7 192 61.5
Medtr1g038530 Medicago truncatula HOM05D006499 ORTHO05D007874 2.9e-63 245.7 197 59.4
MELO3C011747.2 Cucumis melo HOM05D000045 ORTHO05D007874 4.9e-63 245.0 190 62.1
Gohir.D02G188400 Gossypium hirsutum HOM05D006499 ORTHO05D007874 4.9e-63 245.0 198 59.6
Gorai.005G211100 Gossypium raimondii HOM05D006499 ORTHO05D007874 4.9e-63 245.0 198 59.6
Carub.0006s2100 Capsella rubella HOM05D006499 ORTHO05D007874 6.5e-63 244.6 197 61.4
ClCG02G014040 Citrullus lanatus HOM05D006499 ORTHO05D007874 8.4e-63 244.2 186 61.8
Ciclev10032745m.g Citrus clementina HOM05D006499 ORTHO05D007874 8.4e-63 244.2 187 63.6
Pp3c12_9010 Physcomitrium patens HOM05D006499 ORTHO05D007874 8.4e-63 244.2 190 60.5
Medtr1g037830 Medicago truncatula HOM05D006499 ORTHO05D007874 1.4e-62 243.4 197 59.9
AT5G23230 Arabidopsis thaliana HOM05D006499 ORTHO05D007874 1.9e-62 243.0 192 61.5
Lj2g0027544 Lotus japonicus HOM05D006499 ORTHO05D007874 4.2e-62 241.9 194 61.3
Gohir.A03G165200 Gossypium hirsutum HOM05D006499 ORTHO05D007874 5.5e-62 241.5 198 59.1
AL6G34450 Arabidopsis lyrata HOM05D006499 ORTHO05D007874 7.1e-62 241.1 191 62.8
EL10Ac9g22960 Beta vulgaris HOM05D006499 ORTHO05D007874 1.2e-61 240.4 198 60.6
Duzib132G0016 Durio zibethinus HOM05D006499 ORTHO05D007874 1.6e-61 240.0 189 62.4
CSS0024171 Camellia sinensis var. sinensis HOM05D006499 ORTHO05D007874 2.1e-61 239.6 189 61.9
AUR62032973 Chenopodium quinoa HOM05D006499 ORTHO05D007874 4.6e-61 238.4 198 58.1
CARHR190310 Cardamine hirsuta HOM05D006499 ORTHO05D007874 6.0e-61 238.0 191 60.7
Ca_05122_v3 Cicer arietinum L. HOM05D006499 ORTHO05D007874 7.9e-61 237.7 192 58.3
COL.COLO4_33044 Corchorus olitorius HOM05D006499 ORTHO05D007874 1.8e-60 236.5 187 62.0
unitig_578.g16567 Utricularia gibba HOM05D006499 ORTHO05D007874 8.7e-60 234.2 188 58.0
AT5G23220 Arabidopsis thaliana HOM05D006499 ORTHO05D007874 1.5e-59 233.4 195 59.0
AagrBONN_evm.TU.Sc2ySwM_344.3677 Anthoceros agrestis HOM05D006499 ORTHO05D007874 4.3e-59 231.9 183 60.7
arahy.Tifrunner.gnm1.ann1.BULB93 Arachis hypogaea HOM05D006499 ORTHO05D007874 4.3e-59 231.9 175 61.1
Lalb_Chr10g0094911 Lupinus albus HOM05D006499 ORTHO05D007874 5.7e-59 231.5 192 58.3
Os04g0525800 Oryza sativa ssp. japonica HOM05D006499 ORTHO05D007874 5.7e-59 231.5 187 58.8
Phvul.003G004400 Phaseolus vulgaris HOM05D006499 ORTHO05D007874 7.4e-59 231.1 188 59.0
TPR.G29797 Trifolium pratense HOM05D006499 ORTHO05D007874 2.8e-58 229.2 195 57.4
Duzib132G0405 Durio zibethinus HOM05D006499 ORTHO05D007874 8.2e-58 227.6 187 59.4
Zm00001eb076800 Zea mays HOM05D006499 ORTHO05D007874 4.5e-56 221.9 186 58.1
AUR62017708 Chenopodium quinoa HOM05D006499 ORTHO05D007874 5.0e-55 218.4 178 59.0
Mapoly0180s0008 Marchantia polymorpha HOM05D006499 ORTHO05D007874 1.3e-52 210.3 186 54.8
TAR622G0494 Trochodendron aralioides HOM05D006499 ORTHO05D007874 1.9e-51 206.5 150 66.7
Sc06g0006830 Simmondsia chinensis HOM05D006499 ORTHO05D007874 6.3e-50 201.4 145 64.1
COL.COLO4_06169 Corchorus olitorius HOM05D006499 ORTHO05D007874 8.2e-50 201.1 167 60.5
CBR_g16977 Chara braunii HOM05D006499 ORTHO05D007874 1.0e-47 194.1 195 49.7
GSVIVG01026240001 Vitis vinifera HOM05D006499 ORTHO05D007874 8.2e-42 174.5 185 51.9
SHI02178 Sapria himalayana HOM05D006499 ORTHO05D007874 1.4e-41 173.7 192 50.5
SEGI_40434 Sequoiadendron giganteum HOM05D006499 ORTHO05D007874 8.8e-36 154.5 106 64.2
CAN.G655.2 Capsicum annuum HOM05D006499 ORTHO05D007874 5.0e-31 138.7 108 57.4
QL04p029592 Quercus lobata HOM05D006499 ORTHO05D007874 1.8e-28 130.2 94 67.0
CAN.G2.1 Capsicum annuum HOM05D006499 ORTHO05D007874 8.2e-26 121.3 80 72.5
QL05p044270 Quercus lobata HOM05D000125 ORTHO05D007874 9.1e-25 117.9 110 55.5
arahy.Tifrunner.gnm1.ann1.YHJY2A Arachis hypogaea HOM05D006499 ORTHO05D007874 5.5e-22 108.6 95 56.8
Nn5g28518 Nelumbo nucifera HOM05D006499 ORTHO05D007874 3.6e-21 105.9 89 57.3
A03p62810 Brassica napus HOM05D006499 ORTHO05D007874 3.4e-19 99.4 79 59.5
BraA03t15356Z Brassica rapa HOM05D006499 ORTHO05D007874 3.4e-19 99.4 79 59.5
PGR044G1944 Punica granatum HOM05D006499 ORTHO05D007874 1.4e-17 94.0 145 41.4
BcaC03g13135 Brassica carinata HOM05D006499 ORTHO05D007874 5.4e-17 92.0 74 56.8
Medtr1g037850 Medicago truncatula HOM05D006499 ORTHO05D007874 1.6e-16 90.5 58 67.2
Cre10.g448500 Chlamydomonas reinhardtii HOM05D006499 ORTHO05D007874 5.0e-15 85.5 188 30.3
MCO13G030 Micromonas commoda HOM05D006499 ORTHO05D007874 9.4e-14 81.3 177 28.2
ATR0736G109 Amborella trichopoda HOM05D005658 ORTHO05D006989 1.8e-12 77.0 189 30.2
CBR_g48432 Chara braunii HOM05D005658 ORTHO05D006989 3.0e-12 76.3 182 30.2
Mapoly0052s0007 Marchantia polymorpha HOM05D005658 ORTHO05D006989 5.2e-12 75.5 178 29.8
Cc04_g02920 Coffea canephora HOM05D005658 ORTHO05D006989 8.8e-12 74.7 189 29.6
Nitab4.5_0004205g0010 Nicotiana tabacum HOM05D005658 ORTHO05D006989 8.8e-12 74.7 179 30.7
Nitab4.5_0001315g0030 Nicotiana tabacum HOM05D005658 ORTHO05D006989 1.2e-11 74.3 195 29.2
MCO09G426 Micromonas commoda HOM05D006499 ORTHO05D007874 2.0e-11 73.6 181 27.1
CAN.G438.34 Capsicum annuum HOM05D005658 ORTHO05D006989 4.4e-11 72.4 189 28.6
Cfa021425 Carpinus fangiana HOM05D006499 ORTHO05D007874 5.7e-11 72.0 196 30.1
Solyc03g120540.3 Solanum lycopersicum HOM05D005658 ORTHO05D006989 7.5e-11 71.6 179 30.2
Cfa026003 Carpinus fangiana HOM05D006499 ORTHO05D007874 9.8e-11 71.2 177 28.2
Peaxi162Scf00015g00132 Petunia axillaris HOM05D005658 ORTHO05D006989 1.7e-10 70.5 171 33.3
SGA_v2.0_scaffold68G22977 Striga asiatica HOM05D005658 ORTHO05D006989 2.2e-10 70.1 176 29.5
AL3G28880 Arabidopsis lyrata HOM05D005658 ORTHO05D006989 2.8e-10 69.7 178 32.0
Sopen03g039400 Solanum pennellii HOM05D005658 ORTHO05D006989 3.7e-10 69.3 170 29.4
Thhalv10021560m.g Eutrema salsugineum HOM05D005658 ORTHO05D006989 6.3e-10 68.6 174 30.5
AT3G16190 Arabidopsis thaliana HOM05D005658 ORTHO05D006989 8.3e-10 68.2 178 31.5
Cre16.g674650 Chlamydomonas reinhardtii HOM05D005658 ORTHO05D006989 8.3e-10 68.2 168 28.0
Ca_29435_v3 Cicer arietinum L. HOM05D006499 ORTHO05D007874 1.4e-09 67.4 161 28.6
Sp3g14560 Schrenkiella parvula HOM05D005658 ORTHO05D006989 1.4e-09 67.4 174 29.9
SGA_v2.0_scaffold4G02011 Striga asiatica HOM05D005658 ORTHO05D006989 1.4e-09 67.4 178 28.1
Oeu029646.1 Olea europaea HOM05D005658 ORTHO05D006989 1.8e-09 67.0 166 29.5
CARHR091380 Cardamine hirsuta HOM05D005658 ORTHO05D006989 7.0e-09 65.1 177 28.2
Migut.D01013 Erythranthe guttata HOM05D005658 ORTHO05D006989 1.2e-08 64.3 149 27.5
Nitab4.5_0001968g0140 Nicotiana tabacum HOM05D005658 ORTHO05D006989 1.2e-08 64.3 174 29.9
Pp3s30_680 Physcomitrium patens HOM05D006499 ORTHO05D007874 1.6e-08 63.9 193 27.5
Cre17.g706800 Chlamydomonas reinhardtii HOM05D006499 ORTHO05D007874 4.5e-08 62.4 179 25.1
Duzib235G1329 Durio zibethinus HOM05D005658 ORTHO05D006989 4.5e-08 62.4 173 29.5
Nn6g33750 Nelumbo nucifera HOM05D006499 ORTHO05D007874 7.7e-08 61.6 50 58.0
COL.COLO4_30455 Corchorus olitorius HOM05D005658 ORTHO05D006989 1.0e-07 61.2 170 28.2
Os02g0276200 Oryza sativa ssp. japonica HOM05D005658 ORTHO05D006989 1.0e-07 61.2 147 27.9
Gohir.D03G062533 Gossypium hirsutum HOM05D005658 ORTHO05D006989 1.7e-07 60.5 187 27.8
Gorai.003G064300 Gossypium raimondii HOM05D005658 ORTHO05D006989 1.7e-07 60.5 187 27.8
Pp3s30_567 Physcomitrium patens HOM05D006499 ORTHO05D007874 2.9e-07 59.7 159 28.3
Thecc.06G094500 Theobroma cacao HOM05D005658 ORTHO05D006989 3.8e-07 59.3 187 26.2
Gohir.D03G066800 Gossypium hirsutum HOM05D005658 ORTHO05D006989 1.1e-06 57.8 177 27.7
Gohir.A02G119700 Gossypium hirsutum HOM05D005658 ORTHO05D006989 1.5e-06 57.4 174 27.0


User provided reference genes

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