Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0618G182 Amborella trichopoda HOM05D005372 ORTHO05D006593 4.7e-61 237.7 117 100.0
CiPaw.14G062800 Carya illinoinensis HOM05D005372 ORTHO05D006593 1.4e-25 119.8 110 60.9
PSO541G6474 Papaver somniferum HOM05D005372 ORTHO05D006593 2.4e-25 119.0 95 64.2
PSO675G4385 Papaver somniferum HOM05D005372 ORTHO05D006593 2.4e-25 119.0 95 64.2
TWI79G0177 Tripterygium wilfordii HOM05D005372 ORTHO05D006593 3.2e-25 118.6 106 58.5
AT5G58990 Arabidopsis thaliana HOM05D005372 ORTHO05D006593 7.0e-25 117.5 105 61.9
Nn1g02876 Nelumbo nucifera HOM05D005372 ORTHO05D006593 9.2e-25 117.1 86 68.6
Nn3g19715 Nelumbo nucifera HOM05D005372 ORTHO05D006593 9.2e-25 117.1 93 66.7
FAN25G0461 Fragaria x ananassa HOM05D005372 ORTHO05D006593 1.6e-24 116.3 106 59.4
THA.LOC104799412 Tarenaya hassleriana HOM05D005372 ORTHO05D006593 1.6e-24 116.3 103 61.2
CARHR285220 Cardamine hirsuta HOM05D005372 ORTHO05D006593 2.0e-24 115.9 103 61.2
BcaB05g22467 Brassica carinata HOM05D005372 ORTHO05D006593 2.7e-24 115.5 103 60.2
CDE07G0920 Ceratophyllum demersum HOM05D005372 ORTHO05D006593 2.7e-24 115.5 108 62.0
FvH4_3g37450 Fragaria vesca HOM05D005372 ORTHO05D006593 2.7e-24 115.5 105 59.0
THA.LOC104810736 Tarenaya hassleriana HOM05D005372 ORTHO05D006593 2.7e-24 115.5 86 66.3
AL8G35370 Arabidopsis lyrata HOM05D005372 ORTHO05D006593 4.6e-24 114.8 103 58.3
MD03G1080100 Malus domestica HOM05D005372 ORTHO05D006593 7.8e-24 114.0 92 65.2
TWI75G1302 Tripterygium wilfordii HOM05D005372 ORTHO05D006593 1.3e-23 113.2 103 63.1
BraA02t05820Z Brassica rapa HOM05D005372 ORTHO05D006593 1.7e-23 112.8 104 60.6
Aa31LG1G11690 Aethionema arabicum HOM05D005372 ORTHO05D006593 2.3e-23 112.5 103 58.3
AT5G52370 Arabidopsis thaliana HOM05D005372 ORTHO05D006593 2.3e-23 112.5 100 61.0
BcaC03g14063 Brassica carinata HOM05D005372 ORTHO05D006593 2.3e-23 112.5 106 59.4
C02p12980 Brassica napus HOM05D005372 ORTHO05D006593 2.3e-23 112.5 106 59.4
A02p07420 Brassica napus HOM05D005372 ORTHO05D006593 3.0e-23 112.1 104 59.6
Nitab4.5_0002718g0040 Nicotiana tabacum HOM05D005372 ORTHO05D006593 3.0e-23 112.1 87 64.4
Migut.K01340 Erythranthe guttata HOM05D005372 ORTHO05D006593 5.0e-23 111.3 104 57.7
Sp6g20690 Schrenkiella parvula HOM05D005372 ORTHO05D006593 6.6e-23 110.9 86 66.3
PGSC0003DMG400030429 Solanum tuberosum HOM05D005372 ORTHO05D006593 6.6e-23 110.9 82 64.6
Gohir.D07G106400 Gossypium hirsutum HOM05D005372 ORTHO05D006593 8.6e-23 110.5 107 58.9
Gorai.001G114500 Gossypium raimondii HOM05D005372 ORTHO05D006593 8.6e-23 110.5 107 58.9
Thhalv10014944m.g Eutrema salsugineum HOM05D005372 ORTHO05D006593 1.1e-22 110.2 100 60.0
Sopen06g033010 Solanum pennellii HOM05D005372 ORTHO05D006593 1.1e-22 110.2 82 64.6
MSTRG.14035 Avicennia marina HOM05D005372 ORTHO05D006593 1.9e-22 109.4 111 55.0
A03p11910 Brassica napus HOM05D005372 ORTHO05D006593 2.5e-22 109.0 103 56.3
unitig_26.g9774 Utricularia gibba HOM05D005372 ORTHO05D006593 2.5e-22 109.0 85 64.7
TAR636G0867 Trochodendron aralioides HOM05D005372 ORTHO05D006593 4.3e-22 108.2 95 63.2
BcaB08g36298 Brassica carinata HOM05D005372 ORTHO05D006593 5.6e-22 107.8 89 62.9
Carub.0008s1963 Capsella rubella HOM05D005372 ORTHO05D006593 5.6e-22 107.8 104 57.7
Solyc06g076620.3 Solanum lycopersicum HOM05D005372 ORTHO05D006593 5.6e-22 107.8 82 63.4
HanXRQChr03g0083951 Helianthus annuus HOM05D005372 ORTHO05D006593 7.3e-22 107.5 80 65.0
MD11G1084700 Malus domestica HOM05D005372 ORTHO05D006593 1.2e-21 106.7 93 63.4
Nitab4.5_0000744g0090 Nicotiana tabacum HOM05D005372 ORTHO05D006593 1.2e-21 106.7 82 63.4
Phvul.011G039001 Phaseolus vulgaris HOM05D005372 ORTHO05D006593 1.2e-21 106.7 81 67.9
C03p14010 Brassica napus HOM05D005372 ORTHO05D006593 1.6e-21 106.3 105 57.1
Potri.009G040100 Populus trichocarpa HOM05D005372 ORTHO05D006593 1.6e-21 106.3 58 82.8
Sabra09G0028200 Salix brachista HOM05D005372 ORTHO05D006593 1.6e-21 106.3 99 59.6
BolC3t13848H Brassica oleracea HOM05D005372 ORTHO05D006593 2.1e-21 105.9 105 57.1
FAN16G3555 Fragaria x ananassa HOM05D005372 ORTHO05D006593 2.1e-21 105.9 106 54.7
BraA03t10503Z Brassica rapa HOM05D005372 ORTHO05D006593 3.6e-21 105.1 104 57.7
RcHm_v2.0_Chr5g0067341 Rosa chinensis HOM05D005372 ORTHO05D006593 3.6e-21 105.1 85 61.2
HanXRQChr04g0109301 Helianthus annuus HOM05D005372 ORTHO05D006593 4.7e-21 104.8 80 65.0
Cc01_g13660 Coffea canephora HOM05D005372 ORTHO05D006593 6.2e-21 104.4 86 57.0
MBI14_g28605_MAGBIO Magnolia biondii HOM05D005372 ORTHO05D006593 1.1e-20 103.6 51 88.2
Rhsim13G0075100 Rhododendron simsii HOM05D005372 ORTHO05D006593 3.1e-20 102.1 100 56.0
BcaB01g04621 Brassica carinata HOM05D005372 ORTHO05D006593 4.0e-20 101.7 105 56.2
SalBow4G1938 Salvia bowleyana HOM05D005372 ORTHO05D006593 1.5e-19 99.8 103 53.4
Cpa.g.sc112.93 Carica papaya HOM05D005372 ORTHO05D006593 2.0e-19 99.4 108 52.8
Aqoxy4G02649 Aquilegia oxysepala HOM05D005372 ORTHO05D006593 2.6e-19 99.0 51 86.3
DCAR_028257 Daucus carota HOM05D005372 ORTHO05D006593 2.6e-19 99.0 53 83.0
Lsat_1_v5_gn_9_25321 Lactuca sativa HOM05D005372 ORTHO05D006593 2.6e-19 99.0 52 82.7
Atru.chr3.4040 Acer truncatum HOM05D005372 ORTHO05D006593 4.4e-19 98.2 56 76.8
ECA247G0538 Erigeron canadensis HOM05D005372 ORTHO05D006593 7.5e-19 97.4 51 82.4
Eucgr.J01954 Eucalyptus grandis HOM05D005372 ORTHO05D006593 7.5e-19 97.4 51 82.4
Hund04902 Selenicereus undatus HOM05D005372 ORTHO05D006593 7.5e-19 97.4 82 58.5
Oeu017419.1 Olea europaea HOM05D005372 ORTHO05D006593 9.8e-19 97.1 52 80.8
Lj4P191T41 Lonicera japonica HOM05D005372 ORTHO05D006593 1.3e-18 96.7 51 82.4
Dinv17075 Davidia involucrata HOM05D005372 ORTHO05D006593 1.7e-18 96.3 52 80.8
Dinv43019 Davidia involucrata HOM05D005372 ORTHO05D006593 1.7e-18 96.3 52 80.8
Dinv43078 Davidia involucrata HOM05D005372 ORTHO05D006593 1.7e-18 96.3 52 80.8
AUR62001715 Chenopodium quinoa HOM05D005372 ORTHO05D006593 2.2e-18 95.9 107 49.5
Duzib168G1893 Durio zibethinus HOM05D005372 ORTHO05D006593 2.2e-18 95.9 86 59.3
Lalb_Chr24g0397111 Lupinus albus HOM05D005372 ORTHO05D006593 2.2e-18 95.9 52 78.8
Haze_24230 Corylus avellana HOM05D005372 ORTHO05D006593 2.9e-18 95.5 52 78.8
SGA_v2.0_scaffold8G04342 Striga asiatica HOM05D005372 ORTHO05D006593 2.9e-18 95.5 91 54.9
Hma1.2p1_0543F.1_g175310 Hydrangea macrophylla HOM05D005372 ORTHO05D006593 3.7e-18 95.1 52 78.8
Zm00001eb066290 Zea mays HOM05D005372 ORTHO05D006593 3.7e-18 95.1 82 59.8
Dinv34320 Davidia involucrata HOM05D001226 ORTHO05D006593 4.9e-18 94.7 51 80.4
FAN11G0559 Fragaria x ananassa HOM05D005372 ORTHO05D006593 4.9e-18 94.7 106 50.9
TAR633G2482 Trochodendron aralioides HOM05D005372 ORTHO05D006593 4.9e-18 94.7 51 80.4
Aqoxy1G00762 Aquilegia oxysepala HOM05D005372 ORTHO05D006593 6.4e-18 94.4 93 55.9
Ciclev10029469m.g Citrus clementina HOM05D005372 ORTHO05D006593 6.4e-18 94.4 53 75.5
Potri.001G246800 Populus trichocarpa HOM05D005372 ORTHO05D006593 6.4e-18 94.4 95 53.7
Cfa011626 Carpinus fangiana HOM05D005372 ORTHO05D006593 8.3e-18 94.0 51 78.4
ClCG02G019810 Citrullus lanatus HOM05D005372 ORTHO05D006593 8.3e-18 94.0 90 58.9
Prupe.6G065000 Prunus persica HOM05D005372 ORTHO05D006593 8.3e-18 94.0 83 60.2
Thecc.09G309200 Theobroma cacao HOM05D005372 ORTHO05D006593 8.3e-18 94.0 90 55.6
Zm00001eb433670 Zea mays HOM05D005372 ORTHO05D006593 1.1e-17 93.6 81 56.8
arahy.Tifrunner.gnm1.ann1.IGF4QT Arachis hypogaea HOM05D005372 ORTHO05D006593 1.4e-17 93.2 53 77.4
arahy.Tifrunner.gnm1.ann1.UR5XNC Arachis hypogaea HOM05D005372 ORTHO05D006593 1.4e-17 93.2 53 77.4
Gohir.A07G102200 Gossypium hirsutum HOM05D005372 ORTHO05D006593 1.4e-17 93.2 107 52.3
Lj3g0018318 Lotus japonicus HOM05D005372 ORTHO05D006593 1.4e-17 93.2 94 54.3
Ah.13g070300 Amaranthus hybridus HOM05D005372 ORTHO05D006593 1.9e-17 92.8 105 53.3
CANSAT54G2064 Cannabis sativa HOM05D005372 ORTHO05D006593 1.9e-17 92.8 86 58.1
VMungo1127G1276 Vigna mungo HOM05D005372 ORTHO05D006593 1.9e-17 92.8 52 78.8
FAN21G1258 Fragaria x ananassa HOM05D005372 ORTHO05D006593 2.4e-17 92.4 106 50.0
SalBow6G3269 Salvia bowleyana HOM05D005372 ORTHO05D006593 2.4e-17 92.4 76 59.2
SGA_v2.0_scaffold35G14025 Striga asiatica HOM05D005372 ORTHO05D006593 2.4e-17 92.4 91 53.8
EL10Ac7g16097 Beta vulgaris HOM05D005372 ORTHO05D006593 3.2e-17 92.0 53 73.6
Peaxi162Scf01058g00152 Petunia axillaris HOM05D005372 ORTHO05D006593 3.2e-17 92.0 51 76.5
Manes.02G123700 Manihot esculenta HOM05D005372 ORTHO05D006593 4.1e-17 91.7 52 76.9
PGR119G2477 Punica granatum HOM05D005372 ORTHO05D006593 4.1e-17 91.7 102 52.9
CAN.G394.95 Capsicum annuum HOM05D005372 ORTHO05D006593 5.4e-17 91.3 52 73.1
QL01p028939 Quercus lobata HOM05D005372 ORTHO05D006593 5.4e-17 91.3 108 52.8
VMungo1127G1643 Vigna mungo HOM05D005372 ORTHO05D006593 5.4e-17 91.3 53 77.4
Sabra16G0149900 Salix brachista HOM05D005372 ORTHO05D006593 7.0e-17 90.9 95 51.6
Actinidia08556 Actinidia chinensis HOM05D005372 ORTHO05D006593 1.2e-16 90.1 52 73.1
Actinidia25121 Actinidia chinensis HOM05D005372 ORTHO05D006593 1.2e-16 90.1 52 73.1
Medtr2g097890 Medicago truncatula HOM05D005372 ORTHO05D006593 1.2e-16 90.1 86 58.1
Glyma.15G033200 Glycine max HOM05D005372 ORTHO05D006593 1.6e-16 89.7 52 76.9
Lalb_Chr14g0372091 Lupinus albus HOM05D005372 ORTHO05D006593 1.6e-16 89.7 83 55.4
TPR.G6862 Trifolium pratense HOM05D005372 ORTHO05D006593 1.6e-16 89.7 88 54.5
Glyma.13G341200 Glycine max HOM05D005372 ORTHO05D006593 2.1e-16 89.4 52 75.0
Glyma.11G111000 Glycine max HOM05D005372 ORTHO05D006593 4.6e-16 88.2 52 73.1
Lj6g0015977 Lotus japonicus HOM05D005372 ORTHO05D006593 4.6e-16 88.2 96 51.0
Phvul.011G206600 Phaseolus vulgaris HOM05D005372 ORTHO05D006593 4.6e-16 88.2 52 75.0
Psat5g285800 Pisum sativum HOM05D005372 ORTHO05D006593 4.6e-16 88.2 81 53.1
MELO3C025881.2 Cucumis melo HOM05D005372 ORTHO05D006593 6.0e-16 87.8 52 73.1
SHI05895 Sapria himalayana HOM05D005372 ORTHO05D006593 6.0e-16 87.8 122 44.3
CsaV3_6G016530 Cucumis sativus L. HOM05D005372 ORTHO05D006593 1.7e-15 86.3 103 51.5
CSS0039141 Camellia sinensis var. sinensis HOM05D005372 ORTHO05D006593 3.0e-15 85.5 112 42.9
Os02g0481000 Oryza sativa ssp. japonica HOM05D005372 ORTHO05D006593 3.0e-15 85.5 102 48.0
Sed0010324 Sechium edule HOM05D005372 ORTHO05D006593 3.0e-15 85.5 90 52.2
CSS0037054 Camellia sinensis var. sinensis HOM05D005372 ORTHO05D006593 3.9e-15 85.1 112 42.9
BolC2t07410H Brassica oleracea HOM05D005372 ORTHO05D006593 6.6e-15 84.3 93 54.8
C09p51220 Brassica napus HOM05D005372 ORTHO05D006593 8.6e-15 84.0 90 56.7
Sc06g0008390 Simmondsia chinensis HOM05D005372 ORTHO05D006593 1.9e-14 82.8 73 57.5
Mapoly0002s0283 Marchantia polymorpha HOM05D005372 ORTHO05D006593 4.3e-14 81.6 53 62.3
AagrBONN_evm.TU.Sc2ySwM_228.2511 Anthoceros agrestis HOM05D005372 ORTHO05D006593 2.8e-13 79.0 89 42.7
Pp3c9_8860 Physcomitrium patens HOM05D005372 ORTHO05D006593 4.0e-12 75.1 81 46.9
Nitab4.5_0000933g0130 Nicotiana tabacum HOM05D005372 ORTHO05D006593 5.2e-12 74.7 69 58.0
CBR_g8222 Chara braunii HOM05D005372 ORTHO05D006593 4.4e-11 71.6 79 45.6
SMO111G0201 Selaginella moellendorffii HOM05D005372 ORTHO05D006593 1.4e-09 66.6 53 47.2
Glyma.12G037300 Glycine max HOM05D005372 ORTHO05D006593 2.4e-09 65.9 44 65.9
MD06G1146500 Malus domestica HOM05D005372 ORTHO05D006593 4.3e-06 55.1 80 48.8
Zm00001eb217580 Zea mays HOM05D000360 ORTHO05D000234 9.5e-06 53.9 42 57.1


User provided reference genes

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