Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0618G165 Amborella trichopoda HOM05D006922 ORTHO05D008564 0.0e+00 1110.9 550 100.0
CiPaw.13G078100 Carya illinoinensis HOM05D006922 ORTHO05D008564 7.9e-220 767.3 470 76.4
TAR636G2664 Trochodendron aralioides HOM05D006922 ORTHO05D008564 2.0e-218 762.7 559 66.4
Cc01_g14160 Coffea canephora HOM05D006922 ORTHO05D008564 5.7e-218 761.1 479 74.1
CSS0043924 Camellia sinensis var. sinensis HOM05D006922 ORTHO05D008564 9.7e-218 760.4 470 74.3
vmacro02966 Vaccinium macrocarpon HOM05D006922 ORTHO05D008564 6.3e-217 757.7 474 74.1
GSVIVG01024745001 Vitis vinifera HOM05D006922 ORTHO05D008564 1.4e-216 756.5 484 72.3
QL01p038111 Quercus lobata HOM05D006922 ORTHO05D008564 1.8e-216 756.1 528 70.6
Rhsim13G0069900 Rhododendron simsii HOM05D006922 ORTHO05D008564 2.4e-216 755.7 526 70.5
Nn2g13696 Nelumbo nucifera HOM05D006922 ORTHO05D008564 3.1e-216 755.4 535 70.5
ClCG02G019570 Citrullus lanatus HOM05D006922 ORTHO05D008564 4.1e-216 755.0 457 76.1
Hund18850 Selenicereus undatus HOM05D006922 ORTHO05D008564 2.0e-215 752.7 484 72.7
Atru.chr3.4225 Acer truncatum HOM05D006922 ORTHO05D008564 2.6e-215 752.3 467 73.7
Actinidia25162 Actinidia chinensis HOM05D006922 ORTHO05D008564 8.5e-214 747.3 458 74.7
TWI75G0327 Tripterygium wilfordii HOM05D006922 ORTHO05D008564 8.5e-214 747.3 535 69.0
Aqoxy4G02590 Aquilegia oxysepala HOM05D006922 ORTHO05D008564 1.5e-213 746.5 482 72.6
Gohir.A13G224600 Gossypium hirsutum HOM05D006922 ORTHO05D008564 9.4e-213 743.8 508 71.1
Lsat_1_v5_gn_5_171361 Lactuca sativa HOM05D006922 ORTHO05D008564 1.2e-212 743.4 518 69.3
CsaV3_6G016240 Cucumis sativus L. HOM05D006922 ORTHO05D008564 1.6e-212 743.0 457 74.6
Duzib170G0653 Durio zibethinus HOM05D006922 ORTHO05D008564 8.0e-212 740.7 464 73.5
Gorai.013G260300 Gossypium raimondii HOM05D006922 ORTHO05D008564 1.0e-211 740.3 501 71.7
Thecc.09G302300 Theobroma cacao HOM05D006922 ORTHO05D008564 1.0e-211 740.3 495 72.3
PSO384G3055 Papaver somniferum HOM05D006922 ORTHO05D008564 1.4e-211 740.0 534 66.3
PSO339G4985 Papaver somniferum HOM05D006922 ORTHO05D008564 6.7e-211 737.6 534 68.4
FvH4_3g38500 Fragaria vesca HOM05D006922 ORTHO05D008564 8.8e-211 737.3 522 68.4
Gohir.D13G229600 Gossypium hirsutum HOM05D006922 ORTHO05D008564 8.8e-211 737.3 530 69.2
Sed0026257 Sechium edule HOM05D006922 ORTHO05D008564 2.0e-210 736.1 472 72.7
Medtr5g070310 Medicago truncatula HOM05D006922 ORTHO05D008564 5.7e-210 734.6 485 71.1
VMungo0647G1020 Vigna mungo HOM05D006922 ORTHO05D008564 5.7e-210 734.6 483 70.6
HanXRQChr01g0011191 Helianthus annuus HOM05D006922 ORTHO05D008564 2.2e-209 732.6 526 68.3
Cfa011691 Carpinus fangiana HOM05D006922 ORTHO05D008564 2.8e-209 732.3 458 74.2
ECA248G0600 Erigeron canadensis HOM05D006922 ORTHO05D008564 3.7e-209 731.9 468 71.8
Manes.02G119900 Manihot esculenta HOM05D006922 ORTHO05D008564 6.3e-209 731.1 498 69.1
Lalb_Chr17g0345061 Lupinus albus HOM05D006922 ORTHO05D008564 1.8e-208 729.6 493 68.8
Ah.08g221140 Amaranthus hybridus HOM05D006922 ORTHO05D008564 2.4e-208 729.2 496 70.8
RcHm_v2.0_Chr5g0069361 Rosa chinensis HOM05D006922 ORTHO05D008564 7.0e-208 727.6 510 69.2
PGR102G2313 Punica granatum HOM05D006922 ORTHO05D008564 2.0e-207 726.1 479 69.9
Ciclev10028135m.g Citrus clementina HOM05D006922 ORTHO05D008564 2.7e-207 725.7 545 65.1
Glyma.14G193200 Glycine max HOM05D006922 ORTHO05D008564 3.5e-207 725.3 485 70.9
Phvul.008G261700 Phaseolus vulgaris HOM05D006922 ORTHO05D008564 1.0e-206 723.8 484 69.8
Glyma.02G226300 Glycine max HOM05D006922 ORTHO05D008564 1.7e-206 723.0 485 69.9
Sopen09g014130 Solanum pennellii HOM05D006922 ORTHO05D008564 2.2e-206 722.6 546 65.0
CANSAT54G2041 Cannabis sativa HOM05D006922 ORTHO05D008564 2.9e-206 722.2 495 67.9
Nitab4.5_0006472g0010 Nicotiana tabacum HOM05D006922 ORTHO05D008564 3.8e-206 721.8 515 68.9
MD11G1075200 Malus domestica HOM05D006922 ORTHO05D008564 5.0e-206 721.5 524 68.5
Cpa.g.sc112.28 Carica papaya HOM05D006922 ORTHO05D008564 6.5e-206 721.1 480 68.1
Solyc09g031610.4 Solanum lycopersicum HOM05D006922 ORTHO05D008564 1.9e-205 719.5 546 64.1
Haze_24310 Corylus avellana HOM05D006922 ORTHO05D008564 9.4e-205 717.2 528 65.2
Haze_24317 Corylus avellana HOM05D006922 ORTHO05D008564 9.4e-205 717.2 528 65.2
HPP92_019886 Vanilla planifolia HOM05D006922 ORTHO05D008564 1.6e-204 716.5 495 68.9
Psat2g058840 Pisum sativum HOM05D006922 ORTHO05D008564 2.7e-204 715.7 457 71.8
FAN25G0993 Fragaria x ananassa HOM05D006922 ORTHO05D008564 3.6e-204 715.3 541 65.1
CDE04G0365 Ceratophyllum demersum HOM05D006922 ORTHO05D008564 8.0e-204 714.1 511 66.1
Potri.001G251000 Populus trichocarpa HOM05D006922 ORTHO05D008564 8.0e-204 714.1 478 69.9
arahy.Tifrunner.gnm1.ann1.GN6H4S Arachis hypogaea HOM05D006922 ORTHO05D008564 2.3e-203 712.6 483 68.9
TPR.G5774 Trifolium pratense HOM05D006922 ORTHO05D008564 3.0e-203 712.2 485 68.7
arahy.Tifrunner.gnm1.ann1.TP1S59 Arachis hypogaea HOM05D006922 ORTHO05D008564 4.0e-203 711.8 483 68.9
Sc12g0000700 Simmondsia chinensis HOM05D006922 ORTHO05D008564 2.8e-201 705.7 430 74.9
SGA_v2.0_scaffold146G36139 Striga asiatica HOM05D006922 ORTHO05D008564 3.7e-201 705.3 545 63.1
Sabra16G0152600 Salix brachista HOM05D006922 ORTHO05D008564 4.8e-201 704.9 446 71.7
Eucgr.B02258 Eucalyptus grandis HOM05D006922 ORTHO05D008564 1.1e-200 703.7 504 66.9
EL10Ac7g16162 Beta vulgaris HOM05D006922 ORTHO05D008564 2.0e-199 699.5 495 68.7
Migut.N00796 Erythranthe guttata HOM05D006922 ORTHO05D008564 1.3e-198 696.8 483 67.1
THA.LOC104814912 Tarenaya hassleriana HOM05D006922 ORTHO05D008564 2.9e-198 695.7 448 69.6
MSTRG.17876 Avicennia marina HOM05D006922 ORTHO05D008564 3.3e-197 692.2 525 62.9
Os01g0141700 Oryza sativa ssp. japonica HOM05D006922 ORTHO05D008564 2.1e-196 689.5 449 67.9
Dinv14441 Davidia involucrata HOM05D006922 ORTHO05D008564 8.9e-195 684.1 543 63.7
AUR62020125 Chenopodium quinoa HOM05D006922 ORTHO05D008564 2.2e-193 679.5 545 61.5
Oeu056142.1 Olea europaea HOM05D006922 ORTHO05D008564 1.1e-192 677.2 432 71.1
MELO3C025853.2 Cucumis melo HOM05D006922 ORTHO05D008564 1.2e-191 673.7 419 74.7
Nitab4.5_0021689g0010 Nicotiana tabacum HOM05D006922 ORTHO05D008564 2.0e-191 672.9 640 55.0
Sp6g20450 Schrenkiella parvula HOM05D006922 ORTHO05D008564 1.0e-190 670.6 512 61.3
DCAR_007371 Daucus carota HOM05D006922 ORTHO05D008564 2.9e-190 669.1 446 69.1
Lj2A1081T41 Lonicera japonica HOM05D006922 ORTHO05D008564 3.8e-190 668.7 431 72.4
AUR62001652 Chenopodium quinoa HOM05D006922 ORTHO05D008564 6.6e-190 667.9 511 64.2
VMungo1080G0717 Vigna mungo HOM05D006922 ORTHO05D008564 1.5e-189 666.8 480 66.9
Carub.0008s1938 Capsella rubella HOM05D006922 ORTHO05D008564 9.5e-189 664.1 438 68.5
Peaxi162Scf00116g00214 Petunia axillaris HOM05D006922 ORTHO05D008564 4.7e-188 661.8 503 64.4
FAN21G2294 Fragaria x ananassa HOM05D006922 ORTHO05D008564 1.0e-187 660.6 544 61.9
Aa31LG11G520 Aethionema arabicum HOM05D006922 ORTHO05D008564 1.4e-187 660.2 454 66.3
Thhalv10013126m.g Eutrema salsugineum HOM05D006922 ORTHO05D008564 7.8e-183 644.4 458 64.8
C02p13110 Brassica napus HOM05D006922 ORTHO05D008564 1.3e-182 643.7 449 65.5
BolC2t07428H Brassica oleracea HOM05D006922 ORTHO05D008564 1.3e-182 643.7 449 65.5
SHI19141 Sapria himalayana HOM05D006922 ORTHO05D008564 1.7e-182 643.3 486 63.4
BcaB05g22449 Brassica carinata HOM05D006922 ORTHO05D008564 8.6e-182 641.0 435 67.1
BcaC03g14075 Brassica carinata HOM05D006922 ORTHO05D008564 4.3e-181 638.6 434 66.8
A02p07550 Brassica napus HOM05D006922 ORTHO05D008564 9.5e-181 637.5 452 65.0
BraA02t05832Z Brassica rapa HOM05D006922 ORTHO05D008564 8.0e-180 634.4 452 64.6
AL8G35040 Arabidopsis lyrata HOM05D006922 ORTHO05D008564 1.1e-179 634.0 439 66.1
LjContig00155g0013001 Lotus japonicus HOM05D006922 ORTHO05D008564 4.0e-179 632.1 470 62.1
CARHR272670 Cardamine hirsuta HOM05D006922 ORTHO05D008564 5.2e-179 631.7 439 66.1
AT5G58760 Arabidopsis thaliana HOM05D006922 ORTHO05D008564 4.4e-178 628.6 440 65.7
AagrBONN_evm.TU.Sc2ySwM_344.796 Anthoceros agrestis HOM05D006922 ORTHO05D008564 1.4e-176 623.6 469 62.3
SMO200G0225 Selaginella moellendorffii HOM05D006922 ORTHO05D008564 5.6e-173 611.7 493 57.4
Zm00001eb335650 Zea mays HOM05D006922 ORTHO05D008564 2.2e-169 599.7 443 60.9
CBR_g22343 Chara braunii HOM05D006922 ORTHO05D008564 6.4e-169 598.2 468 58.8
Ca_05595_v3 Cicer arietinum L. HOM05D006922 ORTHO05D008564 5.4e-168 595.1 458 62.4
Pp3c8_16660 Physcomitrium patens HOM05D006922 ORTHO05D008564 1.1e-160 570.9 465 56.3
Prupe.6G058000 Prunus persica HOM05D006922 ORTHO05D008564 2.1e-151 540.0 551 55.2
FAN11G1737 Fragaria x ananassa HOM05D006922 ORTHO05D008564 6.0e-151 538.5 345 71.3
HPP92_019877 Vanilla planifolia HOM05D006922 ORTHO05D008564 1.9e-149 533.5 489 57.5
unitig_0.g440 Utricularia gibba HOM05D006922 ORTHO05D008564 2.7e-143 513.1 552 50.4
FAN16G0983 Fragaria x ananassa HOM05D006922 ORTHO05D008564 5.9e-98 362.5 240 71.7
Hma1.2p1_0227F.1_g096470 Hydrangea macrophylla HOM05D006922 ORTHO05D008564 3.3e-72 276.9 161 77.0
Cre13.g577550 Chlamydomonas reinhardtii HOM05D006922 ORTHO05D008564 4.1e-59 233.4 468 32.3
SEGI_07058 Sequoiadendron giganteum HOM05D006922 ORTHO05D008564 8.1e-55 219.2 141 69.5
COL.COLO4_19151 Corchorus olitorius HOM05D006922 ORTHO05D008564 6.4e-52 209.5 305 41.3
Actinidia23246 Actinidia chinensis HOM05D006922 ORTHO05D008564 1.9e-43 181.4 124 69.4
FAN21G0821 Fragaria x ananassa HOM05D006922 ORTHO05D008564 3.1e-38 164.1 105 66.7
CAN.G3.37 Capsicum annuum HOM05D006922 ORTHO05D008564 7.1e-35 152.9 262 38.5
Actinidia16090 Actinidia chinensis HOM05D006922 ORTHO05D008564 9.6e-32 142.5 93 66.7
Zm00001eb098530 Zea mays HOM05D008428 ORTHO05D010743 2.4e-30 137.9 144 49.3
Zm00001eb204440 Zea mays HOM05D008428 ORTHO05D010743 4.0e-30 137.1 168 45.8
Zm00001eb302770 Zea mays HOM05D008428 ORTHO05D010743 1.5e-29 135.2 168 45.2
PGSC0003DMG400022078 Solanum tuberosum HOM05D006922 ORTHO05D008564 5.8e-29 133.3 150 53.3
Actinidia16091 Actinidia chinensis HOM05D006922 ORTHO05D008564 3.4e-21 107.5 61 78.7
BraA07t32003Z Brassica rapa HOM05D004232 ORTHO05D004909 7.6e-21 106.3 338 27.2
Actinidia25165 Actinidia chinensis HOM05D006922 ORTHO05D008564 1.0e-20 105.9 75 62.7
A07p44980 Brassica napus HOM05D004232 ORTHO05D004909 2.9e-20 104.4 339 27.1
Sp5g35040 Schrenkiella parvula HOM05D004232 ORTHO05D004909 8.4e-20 102.8 339 27.7
AL2G40720 Arabidopsis lyrata HOM05D004232 ORTHO05D004909 2.5e-19 101.3 344 26.7
C06p53760 Brassica napus HOM05D004232 ORTHO05D004909 4.2e-19 100.5 337 26.4
Carub.0002s2684 Capsella rubella HOM05D004232 ORTHO05D004909 2.1e-18 98.2 347 28.8
C09p21710 Brassica napus HOM05D004232 ORTHO05D004909 6.0e-18 96.7 336 25.6
BolC9t55076H Brassica oleracea HOM05D004232 ORTHO05D004909 6.0e-18 96.7 336 25.6
BcaC08g47551 Brassica carinata HOM05D004232 ORTHO05D004909 1.0e-17 95.9 338 26.6
BolC6t40394H Brassica oleracea HOM05D004232 ORTHO05D004909 1.0e-17 95.9 338 26.6
VMungo1215G2079 Vigna mungo HOM05D004232 ORTHO05D004909 3.9e-17 94.0 331 25.1
BcaC04g22248 Brassica carinata HOM05D004232 ORTHO05D004909 5.1e-17 93.6 336 25.0
CDE02G4620 Ceratophyllum demersum HOM05D006922 ORTHO05D008564 6.7e-17 93.2 194 35.6
CARHR073790 Cardamine hirsuta HOM05D004232 ORTHO05D004909 1.1e-16 92.4 337 26.4
Glyma.17G103900 Glycine max HOM05D004232 ORTHO05D004909 1.5e-16 92.0 256 29.3
Ah.06g190350 Amaranthus hybridus HOM05D004232 ORTHO05D001990 3.3e-16 90.9 266 28.6
AT1G80710 Arabidopsis thaliana HOM05D004232 ORTHO05D004909 3.3e-16 90.9 340 25.9
EL10Ac1g00573 Beta vulgaris HOM05D004232 ORTHO05D004909 4.3e-16 90.5 338 24.3
TPR.G15784 Trifolium pratense HOM05D004232 ORTHO05D004909 4.3e-16 90.5 333 25.5
MD15G1157400 Malus domestica HOM05D004232 ORTHO05D004909 7.4e-16 89.7 332 24.1
GSVIVG01001050001 Vitis vinifera HOM05D004232 ORTHO05D004909 1.3e-15 89.0 340 23.2
Glyma.13G156200 Glycine max HOM05D004232 ORTHO05D004909 2.1e-15 88.2 256 27.7
Lalb_Chr07g0179621 Lupinus albus HOM05D004232 ORTHO05D004909 2.8e-15 87.8 262 29.0
unitig_52.g17569 Utricularia gibba HOM05D004232 ORTHO05D004909 6.2e-15 86.7 267 27.7
arahy.Tifrunner.gnm1.ann1.TW5YT9 Arachis hypogaea HOM05D004232 ORTHO05D004909 1.1e-14 85.9 331 24.2
BolC6t40395H Brassica oleracea HOM05D004232 ORTHO05D004909 1.4e-14 85.5 318 26.7
Hund21619 Selenicereus undatus HOM05D004232 ORTHO05D004909 1.8e-14 85.1 335 25.1
Phvul.003G175900 Phaseolus vulgaris HOM05D004232 ORTHO05D004909 2.4e-14 84.7 255 27.5
arahy.Tifrunner.gnm1.ann1.BI9JLD Arachis hypogaea HOM05D004232 ORTHO05D004909 3.1e-14 84.3 331 24.2
Gohir.D06G096600 Gossypium hirsutum HOM05D004232 ORTHO05D004909 3.1e-14 84.3 338 24.9
Lj4g0017422 Lotus japonicus HOM05D004232 ORTHO05D004909 3.1e-14 84.3 255 25.5
Glyma.13G156300 Glycine max HOM05D004232 ORTHO05D004909 4.0e-14 84.0 257 28.4
Gohir.A06G096400 Gossypium hirsutum HOM05D004232 ORTHO05D004909 9.0e-14 82.8 338 24.3
Aa31LG1G2250 Aethionema arabicum HOM05D004232 ORTHO05D004909 1.5e-13 82.0 309 24.9
Migut.K00358 Erythranthe guttata HOM05D004232 ORTHO05D004909 2.0e-13 81.6 337 25.5
MD02G1011700 Malus domestica HOM05D004232 ORTHO05D004909 3.4e-13 80.9 332 23.5
Psat4g032960 Pisum sativum HOM05D004232 ORTHO05D004909 3.4e-13 80.9 255 25.5
Thecc.09G036600 Theobroma cacao HOM05D004232 ORTHO05D004909 1.0e-12 79.3 346 24.9
A09p17420 Brassica napus HOM05D004232 ORTHO05D004909 1.7e-12 78.6 177 30.5
Gorai.010G111300 Gossypium raimondii HOM05D004232 ORTHO05D004909 1.7e-12 78.6 339 24.5
Medtr4g116900 Medicago truncatula HOM05D004232 ORTHO05D004909 1.7e-12 78.6 255 27.5
Os08g0282500 Oryza sativa ssp. japonica HOM05D004232 ORTHO05D004909 2.2e-12 78.2 277 26.7
SEGI_07783 Sequoiadendron giganteum HOM05D004232 ORTHO05D004909 2.2e-12 78.2 223 26.5
AUR62000901 Chenopodium quinoa HOM05D004232 ORTHO05D004909 2.9e-12 77.8 341 24.0
TAR625G0697 Trochodendron aralioides HOM05D004232 ORTHO05D004909 5.0e-12 77.0 258 26.0
BcaB07g31225 Brassica carinata HOM05D004232 ORTHO05D004909 8.4e-12 76.3 209 29.2
COL.COLO4_17524 Corchorus olitorius HOM05D004232 ORTHO05D004909 1.1e-11 75.9 226 25.7
Lj9A711T51 Lonicera japonica HOM05D004232 ORTHO05D004909 1.2e-10 72.4 338 22.8
QL02p091766 Quercus lobata HOM05D004232 ORTHO05D004909 2.1e-10 71.6 336 22.9
Duzib168G1849 Durio zibethinus HOM05D004232 ORTHO05D004909 6.1e-10 70.1 229 25.8
Cfa020866 Carpinus fangiana HOM05D004232 ORTHO05D004909 7.9e-10 69.7 333 23.4
BraA09t37368Z Brassica rapa HOM05D004232 ORTHO05D004909 1.8e-09 68.6 180 28.9
BcaC08g47552 Brassica carinata HOM05D004232 ORTHO05D004909 3.9e-09 67.4 227 29.5
Lsat_1_v5_gn_3_57841 Lactuca sativa HOM05D003404 ORTHO05D004052 6.7e-09 66.6 48 58.3
Cre02.g111350 Chlamydomonas reinhardtii HOM05D004232 ORTHO05D004909 3.3e-08 64.3 327 21.4
Haze_19292 Corylus avellana HOM05D004232 ORTHO05D004909 3.3e-08 64.3 353 23.2
Os08g0285200 Oryza sativa ssp. japonica HOM05D004232 ORTHO05D004909 3.3e-08 64.3 259 23.9
Gohir.A06G096200 Gossypium hirsutum HOM05D004232 ORTHO05D004909 5.7e-08 63.5 252 24.2
Nitab4.5_0011109g0010 Nicotiana tabacum HOM05D004232 ORTHO05D004909 1.6e-07 62.0 210 24.3
Actinidia14201 Actinidia chinensis HOM05D000103 ORTHO05D000049 2.8e-07 61.2 65 50.8
FAN15G2692 Fragaria x ananassa HOM05D000467 ORTHO05D000379 6.3e-07 60.1 283 25.4
A04p25240 Brassica napus HOM05D000836 ORTHO05D000709 8.2e-07 59.7 229 25.8
BraA04t18027Z Brassica rapa HOM05D000836 ORTHO05D000709 8.2e-07 59.7 229 25.8
Zm00001eb329590 Zea mays HOM05D001978 ORTHO05D003036 1.1e-06 59.3 248 25.0
AUR62005074 Chenopodium quinoa HOM05D004232 ORTHO05D004909 1.4e-06 58.9 219 25.6
Zm00001eb110650 Zea mays HOM05D001978 ORTHO05D003036 1.4e-06 58.9 244 25.0
Actinidia14207 Actinidia chinensis HOM05D000103 ORTHO05D008564 1.8e-06 58.5 41 61.0
Os07g0657200 Oryza sativa ssp. japonica HOM05D001978 ORTHO05D003036 1.8e-06 58.5 203 27.1
Hma1.2p1_0003F.1_g003610 Hydrangea macrophylla HOM05D006922 ORTHO05D008564 6.9e-06 56.6 37 64.9


User provided reference genes

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