Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0618G162 Amborella trichopoda HOM05D006083 ORTHO05D007634 8.0e-52 206.8 106 100.0
ATR0559G184 Amborella trichopoda HOM05D006083 ORTHO05D007634 2.2e-33 145.6 92 80.4
Actinidia02966 Actinidia chinensis HOM05D006083 ORTHO05D007634 2.2e-17 92.4 93 52.7
CSS0008531 Camellia sinensis var. sinensis HOM05D006083 ORTHO05D007634 2.9e-17 92.0 93 50.5
FAN01G1089 Fragaria x ananassa HOM05D006083 ORTHO05D007634 1.4e-16 89.7 105 46.7
FAN06G0387 Fragaria x ananassa HOM05D006083 ORTHO05D007634 1.4e-16 89.7 105 46.7
FAN06G5109 Fragaria x ananassa HOM05D006083 ORTHO05D007634 1.4e-16 89.7 105 46.7
MD07G1193600 Malus domestica HOM05D006083 ORTHO05D007634 1.4e-16 89.7 103 51.5
FvH4_7g21930 Fragaria vesca HOM05D006083 ORTHO05D007634 3.2e-16 88.6 105 46.7
MBI14_g18543_MAGBIO Magnolia biondii HOM05D006083 ORTHO05D007634 3.2e-16 88.6 89 51.7
Prupe.2G231200 Prunus persica HOM05D006083 ORTHO05D007634 3.2e-16 88.6 89 52.8
FAN10G2882 Fragaria x ananassa HOM05D006083 ORTHO05D007634 4.1e-16 88.2 105 45.7
Nn2g12936 Nelumbo nucifera HOM05D006083 ORTHO05D007634 4.1e-16 88.2 105 48.6
FAN03G2083 Fragaria x ananassa HOM05D006083 ORTHO05D007634 9.2e-16 87.0 105 44.8
vmacro07157 Vaccinium macrocarpon HOM05D006083 ORTHO05D007634 1.2e-15 86.7 92 47.8
Dinv31433 Davidia involucrata HOM05D006083 ORTHO05D007634 4.6e-15 84.7 102 49.0
Medtr7g024000 Medicago truncatula HOM05D006083 ORTHO05D007634 4.6e-15 84.7 105 46.7
Rhsim03G0132700 Rhododendron simsii HOM05D006083 ORTHO05D007634 4.6e-15 84.7 105 45.7
Actinidia07719 Actinidia chinensis HOM05D001446 ORTHO05D001360 1.3e-14 83.2 89 49.4
Ca_07227_v3 Cicer arietinum L. HOM05D006083 ORTHO05D007634 1.3e-14 83.2 105 45.7
RcHm_v2.0_Chr1g0366211 Rosa chinensis HOM05D006083 ORTHO05D007634 1.3e-14 83.2 90 48.9
TWI15G0674 Tripterygium wilfordii HOM05D006083 ORTHO05D007634 1.3e-14 83.2 96 46.9
Ca_29789_v3 Cicer arietinum L. HOM05D006083 ORTHO05D007634 2.3e-14 82.4 105 45.7
Aqoxy4G02985 Aquilegia oxysepala HOM05D006083 ORTHO05D007634 3.0e-14 82.0 90 48.9
Ca_07226_v3 Cicer arietinum L. HOM05D006083 ORTHO05D007634 3.0e-14 82.0 92 48.9
Cfa001507 Carpinus fangiana HOM05D006083 ORTHO05D007634 3.9e-14 81.6 103 44.7
CiPaw.01G284100 Carya illinoinensis HOM05D006083 ORTHO05D007634 3.9e-14 81.6 90 48.9
Atru.chr12.505 Acer truncatum HOM05D006083 ORTHO05D007634 5.1e-14 81.3 85 50.6
Lalb_Chr04g0257841 Lupinus albus HOM05D006083 ORTHO05D007634 8.6e-14 80.5 105 43.8
PSO384G3245 Papaver somniferum HOM05D006083 ORTHO05D007634 8.6e-14 80.5 88 50.0
GSVIVG01016589001 Vitis vinifera HOM05D006083 ORTHO05D007634 1.1e-13 80.1 87 49.4
Haze_17036 Corylus avellana HOM05D006083 ORTHO05D007634 1.9e-13 79.3 94 44.7
Lj1A934T60 Lonicera japonica HOM05D006083 ORTHO05D007634 1.9e-13 79.3 106 43.4
QL08p059019 Quercus lobata HOM05D006083 ORTHO05D007634 2.5e-13 79.0 101 45.5
Psat3g185080 Pisum sativum HOM05D006083 ORTHO05D007634 3.3e-13 78.6 104 42.3
Lj1g0008101 Lotus japonicus HOM05D006083 ORTHO05D007634 4.3e-13 78.2 92 44.6
Lalb_Chr10g0091771 Lupinus albus HOM05D006083 ORTHO05D007634 4.3e-13 78.2 92 45.7
PSO339G3664 Papaver somniferum HOM05D006083 ORTHO05D007634 4.3e-13 78.2 90 47.8
Sed0020975 Sechium edule HOM05D006083 ORTHO05D007634 4.3e-13 78.2 92 46.7
CsaV3_5G026410 Cucumis sativus L. HOM05D006083 ORTHO05D007634 5.6e-13 77.8 101 40.6
ClCG09G020050 Citrullus lanatus HOM05D006083 ORTHO05D007634 7.3e-13 77.4 92 44.6
MELO3C025449.2 Cucumis melo HOM05D006083 ORTHO05D007634 1.2e-12 76.6 92 43.5
TPR.G15506 Trifolium pratense HOM05D006083 ORTHO05D007634 1.2e-12 76.6 92 45.7
Phvul.008G013732 Phaseolus vulgaris HOM05D006083 ORTHO05D007634 1.6e-12 76.3 101 41.6
VMungo1383G1537 Vigna mungo HOM05D006083 ORTHO05D007634 2.8e-12 75.5 101 40.6
arahy.Tifrunner.gnm1.ann1.ES2X5Y Arachis hypogaea HOM05D006083 ORTHO05D007634 3.6e-12 75.1 92 43.5
arahy.Tifrunner.gnm1.ann1.V7LDKI Arachis hypogaea HOM05D006083 ORTHO05D007634 3.6e-12 75.1 92 43.5
CDE05G2458 Ceratophyllum demersum HOM05D006083 ORTHO05D007634 3.6e-12 75.1 105 39.0
Ciclev10030497m.g Citrus clementina HOM05D006083 ORTHO05D007634 3.6e-12 75.1 90 44.4
Glyma.18G288300 Glycine max HOM05D006083 ORTHO05D007634 8.1e-12 73.9 90 44.4
Cc02_g08180 Coffea canephora HOM05D006083 ORTHO05D007634 1.1e-11 73.6 86 45.3
Manes.07G113300 Manihot esculenta HOM05D006083 ORTHO05D007634 3.1e-11 72.0 90 44.4
Sabra08G0037800 Salix brachista HOM05D006083 ORTHO05D007634 3.1e-11 72.0 91 41.8
Sc06g0002680 Simmondsia chinensis HOM05D006083 ORTHO05D007634 6.8e-11 70.9 88 44.3
CANSAT56G0880 Cannabis sativa HOM05D006083 ORTHO05D007634 1.2e-10 70.1 73 49.3
CANSAT56G1432 Cannabis sativa HOM05D006083 ORTHO05D007634 1.2e-10 70.1 73 49.3
DCAR_027665 Daucus carota HOM05D006083 ORTHO05D007634 1.2e-10 70.1 80 46.2
HanXRQChr09g0247731 Helianthus annuus HOM05D006083 ORTHO05D007634 1.2e-10 70.1 89 44.9
Lsat_1_v5_gn_9_65161 Lactuca sativa HOM05D006083 ORTHO05D007634 1.2e-10 70.1 84 48.8
Duzib114G0803 Durio zibethinus HOM05D006083 ORTHO05D007634 1.5e-10 69.7 88 43.2
Peaxi162Scf00060g00026 Petunia axillaris HOM05D006083 ORTHO05D007634 1.5e-10 69.7 102 41.2
EL10Ac2g03425 Beta vulgaris HOM05D006083 ORTHO05D007634 2.0e-10 69.3 95 44.2
Thecc.10G046700 Theobroma cacao HOM05D006083 ORTHO05D007634 2.0e-10 69.3 92 43.5
SEGI_22945 Sequoiadendron giganteum HOM05D006083 ORTHO05D007634 2.6e-10 68.9 89 39.3
PGR142G3850 Punica granatum HOM05D006083 ORTHO05D007634 3.4e-10 68.6 87 44.8
Sopen04g005570 Solanum pennellii HOM05D006083 ORTHO05D007634 3.4e-10 68.6 102 43.1
Gohir.D04G062600 Gossypium hirsutum HOM05D006083 ORTHO05D007634 4.4e-10 68.2 71 50.7
Potri.010G208200 Populus trichocarpa HOM05D006083 ORTHO05D007634 7.6e-10 67.4 91 38.5
Solyc04g011380.4 Solanum lycopersicum HOM05D006083 ORTHO05D007634 7.6e-10 67.4 102 43.1
Cpa.g.sc1.374 Carica papaya HOM05D006083 ORTHO05D007634 1.3e-09 66.6 86 41.9
Gorai.012G069900 Gossypium raimondii HOM05D006083 ORTHO05D007634 1.3e-09 66.6 70 50.0
Oeu040905.3 Olea europaea HOM05D006083 ORTHO05D007634 1.3e-09 66.6 102 40.2
Gohir.A05G349900 Gossypium hirsutum HOM05D006083 ORTHO05D007634 2.2e-09 65.9 70 50.0
AUR62040954 Chenopodium quinoa HOM05D006083 ORTHO05D007634 2.9e-09 65.5 107 36.4
CAN.G786.23 Capsicum annuum HOM05D006083 ORTHO05D007634 3.8e-09 65.1 110 36.4
Potri.008G052500 Populus trichocarpa HOM05D006083 ORTHO05D007634 3.8e-09 65.1 91 38.5
COL.COLO4_14970 Corchorus olitorius HOM05D006083 ORTHO05D007634 1.4e-08 63.2 86 38.4
Hund12547 Selenicereus undatus HOM05D006083 ORTHO05D007634 1.4e-08 63.2 95 41.1
Nitab4.5_0005525g0010 Nicotiana tabacum HOM05D006083 ORTHO05D007634 2.4e-08 62.4 86 40.7
Eucgr.G02918 Eucalyptus grandis HOM05D006083 ORTHO05D007634 3.2e-08 62.0 104 35.6
SHI22592 Sapria himalayana HOM05D006083 ORTHO05D007634 4.1e-08 61.6 98 34.7
THA.LOC104810174 Tarenaya hassleriana HOM05D006083 ORTHO05D007634 2.7e-07 58.9 92 39.1
Sp4g21870 Schrenkiella parvula HOM05D006083 ORTHO05D007634 5.1e-06 54.7 80 38.8
AL4G36990 Arabidopsis lyrata HOM05D006083 ORTHO05D007634 6.6e-06 54.3 93 38.7
CARHR134450 Cardamine hirsuta HOM05D006083 ORTHO05D007634 6.6e-06 54.3 73 41.1
AT2G39580 Arabidopsis thaliana HOM05D006083 ORTHO05D007634 8.6e-06 53.9 95 36.8


User provided reference genes

Program Settings