Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0618G159 Amborella trichopoda HOM05D003987 ORTHO05D004532 4.0e-255 884.4 487 100.0
Nn2g13566 Nelumbo nucifera HOM05D003987 ORTHO05D004532 6.1e-46 189.5 526 35.2
MBI14_g28607_MAGBIO Magnolia biondii HOM05D003987 ORTHO05D004532 2.0e-41 174.5 501 34.5
Ciclev10011513m.g Citrus clementina HOM05D003987 ORTHO05D004532 2.2e-35 154.5 517 31.7
Haze_20924 Corylus avellana HOM05D003987 ORTHO05D004532 4.1e-34 150.2 500 32.8
Dinv37095 Davidia involucrata HOM05D003987 ORTHO05D004532 2.0e-33 147.9 525 30.9
CSS0027188 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 2.6e-33 147.5 529 32.7
GSVIVG01034033001 Vitis vinifera HOM05D003987 ORTHO05D004532 3.4e-33 147.1 509 32.6
Cpa.g.sc56.87 Carica papaya HOM05D003987 ORTHO05D004532 4.5e-33 146.7 515 29.7
Atru.chr8.2120 Acer truncatum HOM05D003987 ORTHO05D004532 7.7e-33 146.0 509 32.4
Duzib093G0208 Durio zibethinus HOM05D003987 ORTHO05D004532 1.7e-32 144.8 510 30.6
Gohir.A04G086900 Gossypium hirsutum HOM05D003987 ORTHO05D004532 2.2e-32 144.4 509 31.8
Migut.J00243 Erythranthe guttata HOM05D003987 ORTHO05D004532 3.8e-32 143.7 504 33.3
CSS0016809 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 5.0e-32 143.3 436 33.9
Prupe.6G268000 Prunus persica HOM05D003987 ORTHO05D004532 8.5e-32 142.5 503 31.0
DCAR_012161 Daucus carota HOM05D003987 ORTHO05D004532 1.1e-31 142.1 505 32.7
ClCG10G021770 Citrullus lanatus HOM05D003987 ORTHO05D004532 2.5e-31 141.0 522 29.3
Aqoxy1G00765 Aquilegia oxysepala HOM05D003987 ORTHO05D004532 3.2e-31 140.6 520 31.2
Gohir.A01G224300 Gossypium hirsutum HOM05D003987 ORTHO05D004532 4.2e-31 140.2 537 30.7
Gohir.D04G127200 Gossypium hirsutum HOM05D003987 ORTHO05D004532 5.5e-31 139.8 518 31.7
Sc22g0004580 Simmondsia chinensis HOM05D003987 ORTHO05D004532 5.5e-31 139.8 452 31.0
Gorai.012G110200 Gossypium raimondii HOM05D003987 ORTHO05D004532 9.4e-31 139.0 495 32.1
Lj3g0003026 Lotus japonicus HOM05D003987 ORTHO05D004532 1.2e-30 138.7 505 32.9
Cfa017278 Carpinus fangiana HOM05D003987 ORTHO05D004532 1.6e-30 138.3 498 32.7
QL07p027561 Quercus lobata HOM05D003987 ORTHO05D004532 1.6e-30 138.3 493 32.7
SalBow3G0011 Salvia bowleyana HOM05D003987 ORTHO05D004532 1.6e-30 138.3 513 30.0
MD12G1157700 Malus domestica HOM05D003987 ORTHO05D004532 2.7e-30 137.5 498 31.7
HPP92_003415 Vanilla planifolia HOM05D003987 ORTHO05D004532 3.6e-30 137.1 433 29.8
Manes.09G100200 Manihot esculenta HOM05D003987 ORTHO05D004532 8.0e-30 136.0 444 31.3
Nitab4.5_0000119g0280 Nicotiana tabacum HOM05D003987 ORTHO05D004532 1.0e-29 135.6 491 31.0
Oeu044376.1 Olea europaea HOM05D003987 ORTHO05D004532 1.0e-29 135.6 416 33.4
AUR62028348 Chenopodium quinoa HOM05D003987 ORTHO05D004532 1.4e-29 135.2 406 33.3
Gorai.002G259700 Gossypium raimondii HOM05D003987 ORTHO05D004532 1.4e-29 135.2 528 31.6
CSS0029662 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 2.3e-29 134.4 496 31.9
Duzib128G2001 Durio zibethinus HOM05D003987 ORTHO05D004532 2.3e-29 134.4 491 32.0
SGA_v2.0_scaffold75G24988 Striga asiatica HOM05D003987 ORTHO05D004532 2.3e-29 134.4 438 33.1
AUR62025345 Chenopodium quinoa HOM05D003987 ORTHO05D004532 3.0e-29 134.0 408 32.4
Lj2A83T77 Lonicera japonica HOM05D003987 ORTHO05D004532 3.0e-29 134.0 530 31.7
MELO3C009204.2 Cucumis melo HOM05D003987 ORTHO05D004532 3.9e-29 133.7 501 30.1
CsaV3_3G034330 Cucumis sativus L. HOM05D003987 ORTHO05D004532 3.9e-29 133.7 514 30.2
Nitab4.5_0017865g0010 Nicotiana tabacum HOM05D003987 ORTHO05D004532 3.9e-29 133.7 475 31.2
PSO339G5295 Papaver somniferum HOM05D003987 ORTHO05D004532 3.9e-29 133.7 507 31.0
Glyma.07G142800 Glycine max HOM05D003987 ORTHO05D004532 6.7e-29 132.9 442 29.9
Peaxi162Scf01302g00045 Petunia axillaris HOM05D003987 ORTHO05D004532 8.8e-29 132.5 503 31.0
Actinidia05340 Actinidia chinensis HOM05D003987 ORTHO05D004532 2.0e-28 131.3 522 31.4
Hund08928 Selenicereus undatus HOM05D003987 ORTHO05D004532 2.0e-28 131.3 424 31.8
PSO384G1037 Papaver somniferum HOM05D003987 ORTHO05D004532 2.6e-28 131.0 499 29.7
DCAR_028789 Daucus carota HOM05D003987 ORTHO05D004532 3.3e-28 130.6 515 29.7
BcaC02g11934 Brassica carinata HOM05D003987 ORTHO05D004532 5.7e-28 129.8 407 32.2
Glyma.18G193700 Glycine max HOM05D003987 ORTHO05D004532 7.4e-28 129.4 442 30.1
EL10Ac8g18936 Beta vulgaris HOM05D003987 ORTHO05D004532 9.7e-28 129.0 505 29.7
Potri.006G094600 Populus trichocarpa HOM05D003987 ORTHO05D004532 1.7e-27 128.3 507 30.4
A05p08030 Brassica napus HOM05D003987 ORTHO05D004532 3.7e-27 127.1 405 31.4
Sp4g20270 Schrenkiella parvula HOM05D003987 ORTHO05D004532 4.8e-27 126.7 517 28.2
Thecc.05G024900 Theobroma cacao HOM05D003987 ORTHO05D004532 4.8e-27 126.7 531 30.3
C04p09710 Brassica napus HOM05D003987 ORTHO05D004532 6.3e-27 126.3 413 32.0
MD04G1143500 Malus domestica HOM05D003987 ORTHO05D004532 6.3e-27 126.3 511 31.1
PGSC0003DMG400019132 Solanum tuberosum HOM05D003987 ORTHO05D004532 8.2e-27 125.9 516 29.5
BraA05t19770Z Brassica rapa HOM05D003987 ORTHO05D004532 1.1e-26 125.6 405 31.6
AL4G34930 Arabidopsis lyrata HOM05D003987 ORTHO05D004532 1.8e-26 124.8 508 29.5
AT2G37960 Arabidopsis thaliana HOM05D003987 ORTHO05D004532 3.1e-26 124.0 503 29.8
Cc06_g01840 Coffea canephora HOM05D003987 ORTHO05D004532 3.1e-26 124.0 517 30.2
Sabra06G0072400 Salix brachista HOM05D003987 ORTHO05D004532 5.3e-26 123.2 502 29.1
Carub.0004s1992 Capsella rubella HOM05D003987 ORTHO05D004532 9.1e-26 122.5 499 29.3
FvH4_6g12360 Fragaria vesca HOM05D003987 ORTHO05D004532 1.2e-25 122.1 540 28.0
FAN02G3471 Fragaria x ananassa HOM05D003987 ORTHO05D004532 1.2e-25 122.1 529 28.7
PGSC0003DMG400020336 Solanum tuberosum HOM05D003987 ORTHO05D004532 1.2e-25 122.1 506 28.5
COL.COLO4_14650 Corchorus olitorius HOM05D003987 ORTHO05D004532 2.0e-25 121.3 497 29.6
Lsat_1_v5_gn_9_33201 Lactuca sativa HOM05D003987 ORTHO05D004532 2.0e-25 121.3 513 30.0
Oeu018344.1 Olea europaea HOM05D003987 ORTHO05D004532 2.0e-25 121.3 518 31.5
RcHm_v2.0_Chr3g0464181 Rosa chinensis HOM05D003987 ORTHO05D004532 2.6e-25 120.9 535 28.2
TWI77G0200 Tripterygium wilfordii HOM05D003987 ORTHO05D004532 4.5e-25 120.2 514 29.4
vmacro08611 Vaccinium macrocarpon HOM05D003987 ORTHO05D004532 4.5e-25 120.2 507 30.6
BcaB02g09232 Brassica carinata HOM05D003987 ORTHO05D004532 5.9e-25 119.8 410 30.5
Dinv35526 Davidia involucrata HOM05D003987 ORTHO05D004532 5.9e-25 119.8 507 31.0
Hma1.2p1_0244F.1_g101070 Hydrangea macrophylla HOM05D003987 ORTHO05D004532 5.9e-25 119.8 504 29.4
TAR633G1447 Trochodendron aralioides HOM05D003987 ORTHO05D004532 5.9e-25 119.8 519 28.3
Phvul.008G111900 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 1.0e-24 119.0 517 28.4
THA.LOC104805691 Tarenaya hassleriana HOM05D003987 ORTHO05D004532 1.3e-24 118.6 453 30.2
unitig_749.g14175 Utricularia gibba HOM05D003987 ORTHO05D004532 1.3e-24 118.6 487 28.7
BolC4t22577H Brassica oleracea HOM05D003987 ORTHO05D004532 2.9e-24 117.5 428 30.6
PGR031G1271 Punica granatum HOM05D003987 ORTHO05D004532 2.9e-24 117.5 519 29.1
Lj1g0003107 Lotus japonicus HOM05D003987 ORTHO05D004532 3.8e-24 117.1 437 30.2
Peaxi162Scf00014g00921 Petunia axillaris HOM05D003987 ORTHO05D004532 8.5e-24 115.9 506 28.1
arahy.Tifrunner.gnm1.ann1.B3S732 Arachis hypogaea HOM05D003987 ORTHO05D004532 1.5e-23 115.2 524 28.4
CDE02G0690 Ceratophyllum demersum HOM05D003987 ORTHO05D004532 1.5e-23 115.2 493 28.4
SEGI_16848 Sequoiadendron giganteum HOM05D003987 ORTHO05D004532 1.5e-23 115.2 559 29.2
Migut.L01985 Erythranthe guttata HOM05D003987 ORTHO05D004532 1.9e-23 114.8 435 29.7
arahy.Tifrunner.gnm1.ann1.S0ZXK0 Arachis hypogaea HOM05D003987 ORTHO05D004532 3.2e-23 114.0 485 28.2
VMungo1383G2510 Vigna mungo HOM05D003987 ORTHO05D004532 9.4e-23 112.5 495 29.1
Sopen09g006640 Solanum pennellii HOM05D003987 ORTHO05D004532 1.2e-22 112.1 507 28.2
HanXRQChr01g0001271 Helianthus annuus HOM05D003987 ORTHO05D004532 1.6e-22 111.7 466 28.3
Ca_20115_v3 Cicer arietinum L. HOM05D003987 ORTHO05D004532 2.1e-22 111.3 439 30.1
MSTRG.19040 Avicennia marina HOM05D003987 ORTHO05D004532 2.7e-22 110.9 138 50.0
Aa31LG10G8760 Aethionema arabicum HOM05D003987 ORTHO05D004532 4.7e-22 110.2 462 28.6
Lalb_Chr01g0022851 Lupinus albus HOM05D003987 ORTHO05D004532 6.1e-22 109.8 405 31.9
Potri.016G109100 Populus trichocarpa HOM05D003987 ORTHO05D004532 1.0e-21 109.0 481 29.1
Thhalv10016588m.g Eutrema salsugineum HOM05D003987 ORTHO05D004532 1.4e-21 108.6 492 27.8
CDE09G1167 Ceratophyllum demersum HOM05D003987 ORTHO05D004532 3.0e-21 107.5 473 29.6
unitig_26.g9099 Utricularia gibba HOM05D003987 ORTHO05D004532 4.0e-21 107.1 280 34.6
BolC4t28137H Brassica oleracea HOM05D003987 ORTHO05D004532 6.7e-21 106.3 493 26.8
Psat7g242560 Pisum sativum HOM05D003987 ORTHO05D004532 6.7e-21 106.3 524 29.4
Oeu009906.1 Olea europaea HOM05D003987 ORTHO05D004532 2.0e-20 104.8 482 30.7
BraA04t18380Z Brassica rapa HOM05D003987 ORTHO05D004532 2.6e-20 104.4 521 27.1
CANSAT78G1629 Cannabis sativa HOM05D003987 ORTHO05D004532 3.3e-20 104.0 494 28.5
Medtr4g019040 Medicago truncatula HOM05D003987 ORTHO05D004532 4.4e-20 103.6 519 28.7
Solyc10g086750.1 Solanum lycopersicum HOM05D003987 ORTHO05D004532 5.7e-20 103.2 101 50.5
Sed0025444 Sechium edule HOM05D003987 ORTHO05D004532 9.7e-20 102.4 451 28.6
Sp5g08320 Schrenkiella parvula HOM05D003987 ORTHO05D004532 3.7e-19 100.5 114 46.5
AL5G35070 Arabidopsis lyrata HOM05D003987 ORTHO05D004532 4.8e-19 100.1 496 29.4
BraA07t29878Z Brassica rapa HOM05D003987 ORTHO05D004532 1.1e-18 99.0 439 28.2
Thhalv10010371m.g Eutrema salsugineum HOM05D003987 ORTHO05D004532 1.8e-18 98.2 413 28.8
TAR623G1001 Trochodendron aralioides HOM05D003987 ORTHO05D004532 7.0e-18 96.3 442 33.5
FAN09G0914 Fragaria x ananassa HOM05D003987 ORTHO05D004532 9.1e-18 95.9 541 25.5
Lalb_Chr19g0124881 Lupinus albus HOM05D003987 ORTHO05D004532 9.1e-18 95.9 406 29.1
Nitab4.5_0002152g0110 Nicotiana tabacum HOM05D003987 ORTHO05D004532 2.7e-17 94.4 224 35.7
A07p21960 Brassica napus HOM05D003987 ORTHO05D004532 4.5e-17 93.6 431 27.8
ECA248G1591 Erigeron canadensis HOM05D003987 ORTHO05D004532 4.5e-17 93.6 201 35.8
arahy.Tifrunner.gnm1.ann1.84Z36X Arachis hypogaea HOM05D003987 ORTHO05D004532 2.2e-16 91.3 494 26.5
AT3G54060 Arabidopsis thaliana HOM05D003987 ORTHO05D004532 3.8e-16 90.5 465 26.9
C06p21870 Brassica napus HOM05D003987 ORTHO05D004532 8.5e-16 89.4 427 28.1
arahy.Tifrunner.gnm1.ann1.L5BN96 Arachis hypogaea HOM05D003987 ORTHO05D004532 1.1e-15 89.0 494 26.7
A04p29100 Brassica napus HOM05D003987 ORTHO05D004532 1.1e-15 89.0 511 26.0
arahy.Tifrunner.gnm1.ann1.C5KK4K Arachis hypogaea HOM05D003987 ORTHO05D004532 2.5e-15 87.8 431 26.2
TPR.G8224 Trifolium pratense HOM05D003987 ORTHO05D004532 4.2e-15 87.0 81 51.9
BcaC08g44664 Brassica carinata HOM05D003987 ORTHO05D004532 1.2e-14 85.5 433 27.5
CARHR132510 Cardamine hirsuta HOM05D003987 ORTHO05D004532 1.2e-14 85.5 501 28.9
Glyma.01G153900 Glycine max HOM05D003987 ORTHO05D004532 1.2e-14 85.5 268 32.1
Glyma.01G108900 Glycine max HOM05D003987 ORTHO05D004532 3.6e-14 84.0 400 26.0
Sopen10g036150 Solanum pennellii HOM05D003987 ORTHO05D004532 4.7e-14 83.6 500 25.0
Glyma.03G074167 Glycine max HOM05D003987 ORTHO05D004532 8.0e-14 82.8 394 26.6
Glyma.01G108800 Glycine max HOM05D003987 ORTHO05D004532 3.0e-13 80.9 400 25.8
Glyma.U031101 Glycine max HOM05D003987 ORTHO05D004532 3.0e-13 80.9 400 25.8
CDE04G2728 Ceratophyllum demersum HOM05D003987 ORTHO05D004532 4.0e-13 80.5 249 28.9
TWI74G0508 Tripterygium wilfordii HOM05D003987 ORTHO05D004532 5.2e-13 80.1 93 48.4
Medtr7g066170 Medicago truncatula HOM05D003987 ORTHO05D004532 8.8e-13 79.3 112 42.0
Nitab4.5_0000008g0400 Nicotiana tabacum HOM05D003987 ORTHO05D004532 2.0e-12 78.2 494 27.3
Zm00001eb298020 Zea mays HOM05D003987 ORTHO05D004532 4.4e-12 77.0 104 42.3
BcaB02g07750 Brassica carinata HOM05D003987 ORTHO05D004532 1.7e-11 75.1 410 25.6
Sp5g18210 Schrenkiella parvula HOM05D003987 ORTHO05D004532 8.3e-11 72.8 423 26.7
VMungo1309G3141 Vigna mungo HOM05D014262 ORTHO05D018084 1.8e-10 71.6 192 29.2
Sed0006107 Sechium edule HOM05D003987 ORTHO05D004532 1.2e-09 68.9 430 27.7
Os03g0100010 Oryza sativa ssp. japonica HOM05D003987 ORTHO05D004532 1.6e-09 68.6 87 42.5
Duzib093G1974 Durio zibethinus HOM05D003987 ORTHO05D004532 2.0e-09 68.2 391 28.4
TPR.G13647 Trifolium pratense HOM05D003987 ORTHO05D004532 5.9e-09 66.6 207 26.1
Phvul.006G111000 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 8.6e-08 62.8 174 29.9
TPR.G34870 Trifolium pratense HOM05D003987 ORTHO05D004532 8.6e-08 62.8 165 30.3
SHI32881 Sapria himalayana HOM05D003987 ORTHO05D004532 9.5e-07 59.3 59 45.8
Phvul.005G150800 Phaseolus vulgaris HOM05D014262 ORTHO05D018084 1.2e-06 58.9 177 26.0
VMungo1309G2694 Vigna mungo HOM05D014262 ORTHO05D018084 2.1e-06 58.2 192 28.1
Phvul.008G082101 Phaseolus vulgaris HOM05D014262 ORTHO05D018084 4.7e-06 57.0 108 34.3
BolC6t37375H Brassica oleracea HOM05D003987 ORTHO05D004532 8.0e-06 56.2 58 48.3


User provided reference genes

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