Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0618G145 Amborella trichopoda HOM05D005333 ORTHO05D005776 8.0e-42 173.3 87 100.0
MBI01_g15682_MAGBIO Magnolia biondii HOM05D005333 ORTHO05D005776 1.5e-11 72.8 49 67.3
vmacro20565 Vaccinium macrocarpon HOM05D005333 ORTHO05D005776 3.3e-11 71.6 44 70.5
GSVIVG01015545001 Vitis vinifera HOM05D005333 ORTHO05D005776 4.3e-11 71.2 49 69.4
MBI01_g45309_MAGBIO Magnolia biondii HOM05D005333 ORTHO05D005776 7.3e-11 70.5 49 65.3
Dinv41504 Davidia involucrata HOM05D005333 ORTHO05D005776 1.3e-10 69.7 44 68.2
Hma1.2p1_0018F.1_g012330 Hydrangea macrophylla HOM05D005333 ORTHO05D005776 1.6e-10 69.3 49 63.3
QL02p088661 Quercus lobata HOM05D005333 ORTHO05D005776 1.6e-10 69.3 41 73.2
DCAR_014887 Daucus carota HOM05D005333 ORTHO05D005776 2.1e-10 68.9 42 73.8
Nn2g12046 Nelumbo nucifera HOM05D005333 ORTHO05D005776 2.1e-10 68.9 52 63.5
CANSAT11G0814 Cannabis sativa HOM05D005333 ORTHO05D005776 2.8e-10 68.6 51 64.7
Cfa003386 Carpinus fangiana HOM05D005333 ORTHO05D005776 2.8e-10 68.6 41 73.2
Haze_25566 Corylus avellana HOM05D005333 ORTHO05D005776 4.8e-10 67.8 41 70.7
Dinv36517 Davidia involucrata HOM05D005333 ORTHO05D005776 4.8e-10 67.8 44 68.2
DCAR_020918 Daucus carota HOM05D005333 ORTHO05D005776 6.2e-10 67.4 47 66.0
Migut.H01282 Erythranthe guttata HOM05D005333 ORTHO05D005776 1.1e-09 66.6 52 61.5
Actinidia40477 Actinidia chinensis HOM05D001011 ORTHO05D000851 1.8e-09 65.9 73 50.7
Oeu044201.1 Olea europaea HOM05D005333 ORTHO05D005776 1.8e-09 65.9 44 68.2
CiPaw.03G244900 Carya illinoinensis HOM05D005333 ORTHO05D005776 2.4e-09 65.5 49 61.2
MD15G1172100 Malus domestica HOM05D005333 ORTHO05D005776 5.3e-09 64.3 49 61.2
Prupe.7G066500 Prunus persica HOM05D005333 ORTHO05D005776 5.3e-09 64.3 49 59.2
Prupe.7G244000 Prunus persica HOM05D005333 ORTHO05D005776 5.3e-09 64.3 49 59.2
MSTRG.12252 Avicennia marina HOM05D005333 ORTHO05D005776 6.9e-09 63.9 53 58.5
arahy.Tifrunner.gnm1.ann1.83L7WY Arachis hypogaea HOM05D005333 ORTHO05D005776 1.2e-08 63.2 46 65.2
arahy.Tifrunner.gnm1.ann1.U3NP9C Arachis hypogaea HOM05D005333 ORTHO05D005776 1.2e-08 63.2 46 65.2
AL6G31740 Arabidopsis lyrata HOM05D005333 ORTHO05D005776 1.5e-08 62.8 45 62.2
Lj4g0001981 Lotus japonicus HOM05D005333 ORTHO05D005776 1.5e-08 62.8 51 58.8
Phvul.003G165300 Phaseolus vulgaris HOM05D005333 ORTHO05D005776 2.0e-08 62.4 55 52.7
ClCG06G011210 Citrullus lanatus HOM05D005333 ORTHO05D005776 3.4e-08 61.6 49 59.2
Duzib187G1708 Durio zibethinus HOM05D005333 ORTHO05D005776 3.4e-08 61.6 39 71.8
Glyma.17G114100 Glycine max HOM05D005333 ORTHO05D005776 3.4e-08 61.6 78 43.6
Lj4g0022056 Lotus japonicus HOM05D005333 ORTHO05D005776 3.4e-08 61.6 46 60.9
SGA_v2.0_scaffold109G31056 Striga asiatica HOM05D005333 ORTHO05D005776 3.4e-08 61.6 53 54.7
unitig_748.g8609 Utricularia gibba HOM05D005333 ORTHO05D005776 3.4e-08 61.6 66 47.0
Glyma.13G166400 Glycine max HOM05D005333 ORTHO05D005776 4.4e-08 61.2 46 58.7
Hma1.2p1_0931F.1_g238060 Hydrangea macrophylla HOM05D005333 ORTHO05D005776 4.4e-08 61.2 51 60.8
Lalb_Chr12g0197971 Lupinus albus HOM05D005333 ORTHO05D005776 4.4e-08 61.2 53 58.5
SGA_v2.0_scaffold3596G54365 Striga asiatica HOM05D005333 ORTHO05D005776 4.4e-08 61.2 45 64.4
SGA_v2.0_scaffold49G18402 Striga asiatica HOM05D005333 ORTHO05D005776 4.4e-08 61.2 45 64.4
Gohir.A06G055500 Gossypium hirsutum HOM05D005333 ORTHO05D005776 5.8e-08 60.8 39 69.2
Gorai.010G063500 Gossypium raimondii HOM05D005333 ORTHO05D005776 5.8e-08 60.8 39 69.2
RcHm_v2.0_Chr2g0088271 Rosa chinensis HOM05D005333 ORTHO05D005776 5.8e-08 60.8 52 55.8
SalBow6G5031 Salvia bowleyana HOM05D005333 ORTHO05D005776 5.8e-08 60.8 34 79.4
Aqoxy7G03689 Aquilegia oxysepala HOM05D005333 ORTHO05D005776 7.6e-08 60.5 43 65.1
BraA02t05559Z Brassica rapa HOM05D005333 ORTHO05D005776 7.6e-08 60.5 50 54.0
MD02G1030500 Malus domestica HOM05D005333 ORTHO05D005776 7.6e-08 60.5 49 55.1
Thecc.09G127500 Theobroma cacao HOM05D005333 ORTHO05D005776 7.6e-08 60.5 39 69.2
TWI34G1084 Tripterygium wilfordii HOM05D005333 ORTHO05D005776 7.6e-08 60.5 52 59.6
Sc08g0006540 Simmondsia chinensis HOM05D005333 ORTHO05D005776 9.9e-08 60.1 57 52.6
AUR62011139 Chenopodium quinoa HOM05D005333 ORTHO05D005776 1.3e-07 59.7 58 55.2
AUR62013349 Chenopodium quinoa HOM05D005333 ORTHO05D005776 1.7e-07 59.3 58 55.2
Medtr4g114610 Medicago truncatula HOM05D005333 ORTHO05D005776 1.7e-07 59.3 42 66.7
VMungo1215G0455 Vigna mungo HOM05D005333 ORTHO05D005776 1.7e-07 59.3 47 57.4
Carub.0006s1858 Capsella rubella HOM05D005333 ORTHO05D005776 2.2e-07 58.9 45 62.2
Cpa.g.sc46.7 Carica papaya HOM05D005333 ORTHO05D005776 2.2e-07 58.9 40 67.5
Eucgr.C01530 Eucalyptus grandis HOM05D005333 ORTHO05D005776 2.2e-07 58.9 43 62.8
FAN26G1318 Fragaria x ananassa HOM05D005333 ORTHO05D005776 2.2e-07 58.9 52 51.9
Hund09250 Selenicereus undatus HOM05D005333 ORTHO05D005776 2.2e-07 58.9 48 54.2
Atru.chr1.953 Acer truncatum HOM05D005333 ORTHO05D005776 2.9e-07 58.5 44 61.4
EL10Ac8g18671 Beta vulgaris HOM05D005333 ORTHO05D005776 2.9e-07 58.5 58 53.4
BcaC03g13741 Brassica carinata HOM05D005333 ORTHO05D005776 2.9e-07 58.5 50 52.0
BolC2t07023H Brassica oleracea HOM05D005333 ORTHO05D005776 2.9e-07 58.5 50 52.0
Lalb_Chr07g0179001 Lupinus albus HOM05D005333 ORTHO05D005776 2.9e-07 58.5 46 63.0
PGR102G2059 Punica granatum HOM05D005333 ORTHO05D005776 2.9e-07 58.5 41 65.9
AT5G20180 Arabidopsis thaliana HOM05D005333 ORTHO05D005776 3.8e-07 58.2 45 60.0
Cc06_g08400 Coffea canephora HOM05D005333 ORTHO05D005776 3.8e-07 58.2 43 67.4
MELO3C010337.2 Cucumis melo HOM05D005333 ORTHO05D005776 3.8e-07 58.2 53 52.8
CsaV3_1G030220 Cucumis sativus L. HOM05D005333 ORTHO05D005776 4.9e-07 57.8 48 54.2
FvH4_1g03150 Fragaria vesca HOM05D005333 ORTHO05D005776 4.9e-07 57.8 52 51.9
FAN19G1630 Fragaria x ananassa HOM05D005333 ORTHO05D005776 4.9e-07 57.8 52 51.9
FAN28G2446 Fragaria x ananassa HOM05D000315 ORTHO05D001379 4.9e-07 57.8 52 51.9
Gohir.D06G054400 Gossypium hirsutum HOM05D005333 ORTHO05D005776 6.4e-07 57.4 39 66.7
Nn2g12039 Nelumbo nucifera HOM05D005333 ORTHO05D005776 6.4e-07 57.4 35 74.3
Eucgr.C01196 Eucalyptus grandis HOM05D005333 ORTHO05D005776 8.4e-07 57.0 48 56.2
FAN23G1698 Fragaria x ananassa HOM05D005333 ORTHO05D005776 8.4e-07 57.0 40 65.0
CDE10G0227 Ceratophyllum demersum HOM05D005333 ORTHO05D005776 1.1e-06 56.6 49 51.0
CDE10G0631 Ceratophyllum demersum HOM05D005333 ORTHO05D005776 1.1e-06 56.6 49 51.0
COL.COLO4_35113 Corchorus olitorius HOM05D005333 ORTHO05D005776 1.1e-06 56.6 34 73.5
Sed0012264 Sechium edule HOM05D005333 ORTHO05D005776 1.1e-06 56.6 49 55.1
BcaB05g22866 Brassica carinata HOM05D005333 ORTHO05D005776 1.4e-06 56.2 50 48.0
Manes.14G133000 Manihot esculenta HOM05D005333 ORTHO05D005776 1.9e-06 55.8 35 71.4
A02p06080 Brassica napus HOM05D005333 ORTHO05D005776 2.4e-06 55.5 50 46.0
CARHR192640 Cardamine hirsuta HOM05D005333 ORTHO05D005776 2.4e-06 55.5 45 57.8
Duzib168G0900 Durio zibethinus HOM05D005333 ORTHO05D005776 3.2e-06 55.1 39 66.7
Ciclev10010320m.g Citrus clementina HOM05D005333 ORTHO05D005776 5.4e-06 54.3 45 55.6
Thhalv10015097m.g Eutrema salsugineum HOM05D005333 ORTHO05D005776 5.4e-06 54.3 47 53.2
Rhsim01G0068900 Rhododendron simsii HOM05D005333 ORTHO05D005776 5.4e-06 54.3 42 64.3
Aa31LG1G14430 Aethionema arabicum HOM05D005333 ORTHO05D005776 7.1e-06 53.9 45 57.8
Ciclev10010005m.g Citrus clementina HOM05D005333 ORTHO05D005776 7.1e-06 53.9 50 58.0
Nitab4.5_0006661g0010 Nicotiana tabacum HOM05D005333 ORTHO05D005776 7.1e-06 53.9 86 41.9
Rhsim03G0248400 Rhododendron simsii HOM05D005333 ORTHO05D005776 7.1e-06 53.9 29 82.8


User provided reference genes

Program Settings