Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0618G120 Amborella trichopoda HOM05D005586 ORTHO05D007044 0.0e+00 1215.3 633 100.0
TAR383G0761 Trochodendron aralioides HOM05D005586 ORTHO05D007044 5.3e-236 821.2 637 68.1
TAR626G0800 Trochodendron aralioides HOM05D005586 ORTHO05D007044 5.0e-234 814.7 637 68.0
Nn4g25000 Nelumbo nucifera HOM05D005586 ORTHO05D007044 1.7e-226 789.6 618 67.5
Aqoxy7G02326 Aquilegia oxysepala HOM05D005586 ORTHO05D007044 2.1e-224 782.7 636 64.9
MBI03_g13495_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 5.2e-223 778.1 641 63.5
Dinv25464 Davidia involucrata HOM05D005586 ORTHO05D007044 9.1e-220 767.3 627 64.4
TWI60G0698 Tripterygium wilfordii HOM05D005586 ORTHO05D007044 9.1e-220 767.3 655 62.9
Dinv41251 Davidia involucrata HOM05D005586 ORTHO05D007044 4.5e-219 765.0 627 64.8
CSS0030464 Camellia sinensis var. sinensis HOM05D005586 ORTHO05D007044 3.8e-218 761.9 626 63.3
PSO063G4043 Papaver somniferum HOM05D005586 ORTHO05D007044 1.1e-217 760.4 637 63.1
PSO170G6484 Papaver somniferum HOM05D005586 ORTHO05D007044 7.2e-217 757.7 637 63.0
Sc08g0005320 Simmondsia chinensis HOM05D005586 ORTHO05D007044 1.6e-216 756.5 634 63.2
SEGI_38070 Sequoiadendron giganteum HOM05D005586 ORTHO05D007044 4.7e-216 755.0 638 62.4
Ah.14g083790 Amaranthus hybridus HOM05D005586 ORTHO05D007044 2.3e-215 752.7 644 61.6
COL.COLO4_33680 Corchorus olitorius HOM05D005586 ORTHO05D007044 4.0e-215 751.9 646 62.8
Rhsim07G0149700 Rhododendron simsii HOM05D005586 ORTHO05D007044 2.0e-214 749.6 632 62.3
Lj9P685T24 Lonicera japonica HOM05D005586 ORTHO05D007044 2.6e-214 749.2 635 62.2
CANSAT11G2700 Cannabis sativa HOM05D005586 ORTHO05D007044 1.1e-212 743.8 647 60.9
CSS0000496 Camellia sinensis var. sinensis HOM05D005586 ORTHO05D007044 3.2e-212 742.3 626 62.5
Duzib168G0896 Durio zibethinus HOM05D005586 ORTHO05D007044 7.0e-212 741.1 647 62.9
CDE04G2484 Ceratophyllum demersum HOM05D005586 ORTHO05D007044 9.2e-212 740.7 633 61.8
EL10Ac8g18286 Beta vulgaris HOM05D005586 ORTHO05D007044 1.6e-211 740.0 649 61.6
MELO3C017465.2 Cucumis melo HOM05D005586 ORTHO05D007044 2.0e-211 739.6 649 61.6
MBI14_g17367_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 4.6e-211 738.4 638 61.6
Glyma.17G063500 Glycine max HOM05D005586 ORTHO05D007044 5.9e-211 738.0 636 61.8
Glyma.20G083600 Glycine max HOM05D005586 ORTHO05D007044 5.9e-211 738.0 636 61.5
Lj4g0013239 Lotus japonicus HOM05D005586 ORTHO05D007044 5.9e-211 738.0 637 61.4
QL02p097708 Quercus lobata HOM05D005586 ORTHO05D007044 5.9e-211 738.0 650 61.8
DCAR_017968 Daucus carota HOM05D005586 ORTHO05D007044 7.8e-211 737.6 633 60.8
Phvul.003G146100 Phaseolus vulgaris HOM05D005586 ORTHO05D007044 1.0e-210 737.3 636 61.5
Cfa013507 Carpinus fangiana HOM05D005586 ORTHO05D007044 1.3e-210 736.9 650 61.7
CiPaw.07G192200 Carya illinoinensis HOM05D005586 ORTHO05D007044 1.3e-210 736.9 650 60.6
Potri.006G168200 Populus trichocarpa HOM05D005586 ORTHO05D007044 2.3e-210 736.1 660 60.2
VMungo1215G0758 Vigna mungo HOM05D005586 ORTHO05D007044 1.1e-209 733.8 623 62.4
CsaV3_1G031580 Cucumis sativus L. HOM05D005586 ORTHO05D007044 1.9e-209 733.0 649 61.2
Lj7P472T26 Lonicera japonica HOM05D005586 ORTHO05D007044 1.9e-209 733.0 635 61.1
Haze_22099 Corylus avellana HOM05D005586 ORTHO05D007044 3.3e-209 732.3 646 61.6
Prupe.2G007900 Prunus persica HOM05D005586 ORTHO05D007044 3.3e-209 732.3 657 60.3
RcHm_v2.0_Chr4g0402481 Rosa chinensis HOM05D005586 ORTHO05D007044 3.3e-209 732.3 649 61.3
Atru.chr7.639 Acer truncatum HOM05D005586 ORTHO05D007044 5.6e-209 731.5 649 61.6
arahy.Tifrunner.gnm1.ann1.F5X18S Arachis hypogaea HOM05D005586 ORTHO05D007044 9.5e-209 730.7 642 60.6
ClCG06G013320 Citrullus lanatus HOM05D005586 ORTHO05D007044 1.2e-208 730.3 649 60.7
Gohir.A08G084500 Gossypium hirsutum HOM05D005586 ORTHO05D007044 1.6e-208 729.9 650 61.5
Sed0016049 Sechium edule HOM05D005586 ORTHO05D007044 2.1e-208 729.6 650 60.6
FAN08G2362 Fragaria x ananassa HOM05D005586 ORTHO05D007044 3.6e-208 728.8 648 61.1
FAN18G4074 Fragaria x ananassa HOM05D005586 ORTHO05D007044 4.7e-208 728.4 650 60.8
FvH4_5g27790 Fragaria vesca HOM05D005586 ORTHO05D007044 1.0e-207 727.2 650 60.6
Gorai.004G099900 Gossypium raimondii HOM05D005586 ORTHO05D007044 1.8e-207 726.5 649 61.3
PGR102G3328 Punica granatum HOM05D005586 ORTHO05D007044 3.1e-207 725.7 638 61.4
Eucgr.C02307 Eucalyptus grandis HOM05D005586 ORTHO05D007044 4.0e-207 725.3 651 59.8
Medtr4g128210 Medicago truncatula HOM05D005586 ORTHO05D007044 8.9e-207 724.2 639 59.8
Ca_21173_v3 Cicer arietinum L. HOM05D005586 ORTHO05D007044 1.2e-206 723.8 638 60.8
Ca_21222_v3 Cicer arietinum L. HOM05D005586 ORTHO05D007044 1.2e-206 723.8 638 60.8
Lalb_Chr12g0199381 Lupinus albus HOM05D005586 ORTHO05D007044 2.0e-206 723.0 642 60.4
Sabra06G0129800 Salix brachista HOM05D005586 ORTHO05D007044 1.3e-205 720.3 660 59.1
Sed0005590 Sechium edule HOM05D005586 ORTHO05D007044 1.7e-205 719.9 647 59.8
Ciclev10007551m.g Citrus clementina HOM05D005586 ORTHO05D007044 3.7e-205 718.8 651 58.8
ECA234G4574 Erigeron canadensis HOM05D005586 ORTHO05D007044 6.4e-205 718.0 633 61.1
Psat0s509g0200 Pisum sativum HOM05D005586 ORTHO05D007044 3.2e-204 715.7 638 59.6
Manes.14G153700 Manihot esculenta HOM05D005586 ORTHO05D007044 4.6e-203 711.8 631 60.4
Thecc.09G173100 Theobroma cacao HOM05D005586 ORTHO05D007044 4.6e-203 711.8 632 61.2
Lsat_1_v5_gn_5_84680 Lactuca sativa HOM05D005586 ORTHO05D007044 5.0e-202 708.4 638 60.3
Cpa.g.sc95.50 Carica papaya HOM05D005586 ORTHO05D007044 5.6e-201 704.9 633 61.3
Peaxi162Scf00231g00064 Petunia axillaris HOM05D005586 ORTHO05D007044 7.3e-201 704.5 646 58.5
Cc06_g13260 Coffea canephora HOM05D005586 ORTHO05D007044 2.1e-200 703.0 643 58.8
Hma1.2p1_1025F.1_g249260 Hydrangea macrophylla HOM05D005586 ORTHO05D007044 4.7e-200 701.8 594 63.1
Aa31LG3G13340 Aethionema arabicum HOM05D005586 ORTHO05D007044 2.3e-199 699.5 650 58.8
MSTRG.6212 Avicennia marina HOM05D005586 ORTHO05D007044 4.0e-199 698.7 647 60.0
MD13G1254800 Malus domestica HOM05D005586 ORTHO05D007044 6.8e-199 698.0 641 59.0
PGSC0003DMG400011415 Solanum tuberosum HOM05D005586 ORTHO05D007044 1.2e-198 697.2 644 57.9
CARHR271250 Cardamine hirsuta HOM05D005586 ORTHO05D007044 1.5e-198 696.8 661 57.5
Solyc10g078790.1 Solanum lycopersicum HOM05D005586 ORTHO05D007044 3.4e-198 695.7 645 58.3
Sopen10g029410 Solanum pennellii HOM05D005586 ORTHO05D007044 4.4e-198 695.3 644 57.9
BcaB01g04458 Brassica carinata HOM05D005586 ORTHO05D007044 7.5e-198 694.5 652 57.5
THA.LOC104811789 Tarenaya hassleriana HOM05D005586 ORTHO05D007044 7.5e-198 694.5 651 58.4
BraA10t43568Z Brassica rapa HOM05D005586 ORTHO05D007044 9.8e-198 694.1 649 58.9
AL8G33420 Arabidopsis lyrata HOM05D005586 ORTHO05D007044 1.7e-197 693.3 654 57.8
BcaC01g06487 Brassica carinata HOM05D005586 ORTHO05D007044 2.2e-197 693.0 652 58.1
CAN.G1161.32 Capsicum annuum HOM05D005586 ORTHO05D007044 2.2e-197 693.0 650 57.8
SGA_v2.0_scaffold17G07909 Striga asiatica HOM05D005586 ORTHO05D007044 2.2e-197 693.0 635 59.4
GSVIVG01029208001 Vitis vinifera HOM05D005586 ORTHO05D007044 2.2e-197 693.0 635 59.8
A03p12820 Brassica napus HOM05D005586 ORTHO05D007044 2.9e-197 692.6 653 57.9
C03p14980 Brassica napus HOM05D005586 ORTHO05D007044 3.7e-197 692.2 655 57.9
BolC3t13940H Brassica oleracea HOM05D005586 ORTHO05D007044 4.9e-197 691.8 654 57.8
BraA03t10590Z Brassica rapa HOM05D005586 ORTHO05D007044 4.9e-197 691.8 652 57.8
AT5G57460 Arabidopsis thaliana HOM05D005586 ORTHO05D007044 1.1e-196 690.6 658 57.3
Nitab4.5_0000730g0080 Nicotiana tabacum HOM05D005586 ORTHO05D007044 1.1e-196 690.6 646 58.0
Carub.0008s1797 Capsella rubella HOM05D005586 ORTHO05D007044 1.4e-196 690.3 656 57.5
Sp6g19170 Schrenkiella parvula HOM05D005586 ORTHO05D007044 4.1e-196 688.7 652 57.1
A10p14890 Brassica napus HOM05D005586 ORTHO05D007044 7.1e-196 688.0 652 57.8
BcaB08g36100 Brassica carinata HOM05D005586 ORTHO05D007044 1.6e-195 686.8 651 58.1
Thhalv10015707m.g Eutrema salsugineum HOM05D005586 ORTHO05D007044 1.6e-195 686.8 653 57.0
Oeu025223.1 Olea europaea HOM05D005586 ORTHO05D007044 1.6e-195 686.8 650 58.3
C09p49310 Brassica napus HOM05D005586 ORTHO05D007044 2.7e-195 686.0 655 58.2
Nitab4.5_0004134g0010 Nicotiana tabacum HOM05D005586 ORTHO05D007044 2.7e-195 686.0 638 58.8
BcaC04g19966 Brassica carinata HOM05D005586 ORTHO05D007044 6.0e-195 684.9 657 58.0
Nitab4.5_0000455g0040 Nicotiana tabacum HOM05D005586 ORTHO05D007044 6.0e-195 684.9 637 58.6
Oeu009835.1 Olea europaea HOM05D005586 ORTHO05D007044 5.1e-194 681.8 649 57.8
Migut.J01477 Erythranthe guttata HOM05D005586 ORTHO05D007044 2.5e-193 679.5 644 57.8
PSO541G5977 Papaver somniferum HOM05D005586 ORTHO05D007044 2.6e-190 669.5 653 57.0
Zm00001eb414690 Zea mays HOM05D005586 ORTHO05D007044 1.3e-189 667.2 643 55.7
AUR62033219 Chenopodium quinoa HOM05D005586 ORTHO05D007044 6.4e-189 664.8 645 57.1
Os08g0243900 Oryza sativa ssp. japonica HOM05D005586 ORTHO05D007044 6.4e-189 664.8 645 55.8
AUR62021301 Chenopodium quinoa HOM05D005586 ORTHO05D007044 1.4e-188 663.7 645 56.9
Aa31LG3G220 Aethionema arabicum HOM05D005586 ORTHO05D007044 2.4e-188 662.9 649 57.0
SHI41749 Sapria himalayana HOM05D005586 ORTHO05D007044 4.1e-188 662.1 650 55.8
BolC9t57782H Brassica oleracea HOM05D005586 ORTHO05D007044 2.7e-187 659.4 655 56.8
TPR.G5407 Trifolium pratense HOM05D005586 ORTHO05D007044 3.5e-187 659.1 590 59.3
Gohir.D08G094100 Gossypium hirsutum HOM05D005586 ORTHO05D007044 2.5e-185 652.9 649 57.0
MBI18_g04576_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 1.3e-181 640.6 631 57.4
Actinidia15717 Actinidia chinensis HOM05D005586 ORTHO05D007044 1.5e-177 627.1 617 57.2
MD13G1254300 Malus domestica HOM05D005586 ORTHO05D007044 7.1e-172 608.2 653 53.0
SalBow6G0691 Salvia bowleyana HOM05D005586 ORTHO05D007044 5.1e-170 602.1 636 53.3
Actinidia14649 Actinidia chinensis HOM05D005586 ORTHO05D007044 4.5e-166 589.0 533 58.9
CDE02G2425 Ceratophyllum demersum HOM05D005586 ORTHO05D007044 8.1e-160 568.2 642 51.2
Mapoly0111s0055 Marchantia polymorpha HOM05D005586 ORTHO05D007044 4.5e-158 562.4 658 48.8
SalBow1G5715 Salvia bowleyana HOM05D005586 ORTHO05D007044 1.0e-157 561.2 639 50.7
MBI16_g35931_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 1.4e-156 557.4 544 56.6
Pp3c25_4850 Physcomitrium patens HOM05D005586 ORTHO05D007044 1.6e-155 553.9 659 49.0
Hma1.2p1_3184F.1_g333760 Hydrangea macrophylla HOM05D005586 ORTHO05D007044 7.9e-155 551.6 630 51.6
BcaC01g06491 Brassica carinata HOM05D005586 ORTHO05D007044 5.3e-135 485.7 621 47.7
AagrBONN_evm.TU.Sc2ySwM_368.670 Anthoceros agrestis HOM05D005586 ORTHO05D007044 1.0e-133 481.5 673 44.0
BcaC01g06494 Brassica carinata HOM05D005586 ORTHO05D007044 1.5e-116 424.5 620 44.2
SMO228G0090 Selaginella moellendorffii HOM05D005586 ORTHO05D007044 8.6e-101 372.1 398 52.3
unitig_899.g14852 Utricularia gibba HOM05D005586 ORTHO05D007044 2.2e-96 357.5 320 62.2
COL.COLO4_04392 Corchorus olitorius HOM05D005586 ORTHO05D007044 4.0e-90 336.7 350 54.9
unitig_899.g14851 Utricularia gibba HOM05D005586 ORTHO05D007044 6.6e-69 266.2 241 54.8
HPP92_000781 Vanilla planifolia HOM05D005586 ORTHO05D007044 1.1e-63 248.8 291 48.5
QL11p053068 Quercus lobata HOM05D005586 ORTHO05D007044 6.7e-37 159.8 115 70.4
CBR_g26159 Chara braunii HOM05D005586 ORTHO05D000002 8.7e-37 159.5 566 27.9
MD16G1258000 Malus domestica HOM05D005586 ORTHO05D007044 5.1e-29 133.7 126 50.8
MD16G1258100 Malus domestica HOM05D005586 ORTHO05D007044 3.4e-17 94.4 114 50.0
CBR_g26157 Chara braunii HOM05D005586 ORTHO05D007044 3.0e-13 81.3 78 52.6
MBI16_g35933_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D009834 2.5e-07 61.6 43 67.4
Oeu013635.1 Olea europaea HOM05D006172 ORTHO05D005515 6.1e-06 57.0 86 44.2


User provided reference genes

Program Settings