Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0618G113 Amborella trichopoda HOM05D003476 ORTHO05D004057 2.8e-39 164.9 85 100.0
Hma1.2p1_2137F.1_g314920 Hydrangea macrophylla HOM05D003476 ORTHO05D004057 7.4e-24 113.6 83 68.7
HPP92_016193 Vanilla planifolia HOM05D003476 ORTHO05D004057 7.4e-24 113.6 75 72.0
MD01G1147400 Malus domestica HOM05D003476 ORTHO05D004057 1.6e-23 112.5 75 73.3
Nn5g27487 Nelumbo nucifera HOM05D003476 ORTHO05D004057 1.6e-23 112.5 78 69.2
TAR633G0614 Trochodendron aralioides HOM05D003476 ORTHO05D004057 1.6e-23 112.5 80 68.8
Ciclev10032786m.g Citrus clementina HOM05D003476 ORTHO05D004057 2.1e-23 112.1 82 67.1
Manes.07G125600 Manihot esculenta HOM05D003476 ORTHO05D004057 2.1e-23 112.1 74 70.3
Prupe.2G246300 Prunus persica HOM05D003476 ORTHO05D004057 2.1e-23 112.1 75 70.7
TAR636G3666 Trochodendron aralioides HOM05D003476 ORTHO05D004057 2.1e-23 112.1 75 70.7
SGA_v2.0_scaffold76G25080 Striga asiatica HOM05D003476 ORTHO05D004057 2.8e-23 111.7 83 68.7
GSVIVG01016365001 Vitis vinifera HOM05D003476 ORTHO05D004057 2.8e-23 111.7 80 67.5
HanXRQChr12g0370541 Helianthus annuus HOM05D003476 ORTHO05D004057 3.7e-23 111.3 72 75.0
Manes.10G017601 Manihot esculenta HOM05D003476 ORTHO05D004057 3.7e-23 111.3 74 71.6
Peaxi162Scf00360g00616 Petunia axillaris HOM05D003476 ORTHO05D004057 3.7e-23 111.3 72 76.4
Phvul.008G226300 Phaseolus vulgaris HOM05D003476 ORTHO05D004057 3.7e-23 111.3 74 74.3
Glyma.14G061900 Glycine max HOM05D003476 ORTHO05D004057 4.8e-23 110.9 74 74.3
Cfa001366 Carpinus fangiana HOM05D003476 ORTHO05D004057 6.2e-23 110.5 72 72.2
MBI16_g26377_MAGBIO Magnolia biondii HOM05D003476 ORTHO05D004057 6.2e-23 110.5 81 66.7
CSS0000698 Camellia sinensis var. sinensis HOM05D003476 ORTHO05D004057 8.2e-23 110.2 81 65.4
Duzib128G2055 Durio zibethinus HOM05D003476 ORTHO05D004057 8.2e-23 110.2 75 70.7
Gohir.A13G016600 Gossypium hirsutum HOM05D003476 ORTHO05D004057 8.2e-23 110.2 72 73.6
Gorai.013G019600 Gossypium raimondii HOM05D003476 ORTHO05D004057 8.2e-23 110.2 72 73.6
TAR636G1152 Trochodendron aralioides HOM05D003476 ORTHO05D004057 8.2e-23 110.2 83 65.1
BcaB01g03582 Brassica carinata HOM05D003476 ORTHO05D004057 1.1e-22 109.8 75 69.3
Haze_17184 Corylus avellana HOM05D003476 ORTHO05D004057 1.4e-22 109.4 72 69.4
Gohir.D13G017700 Gossypium hirsutum HOM05D003476 ORTHO05D004057 1.4e-22 109.4 72 73.6
Nn2g13624 Nelumbo nucifera HOM05D003476 ORTHO05D004057 1.4e-22 109.4 83 66.3
MSTRG.8311 Avicennia marina HOM05D003476 ORTHO05D004057 1.8e-22 109.0 83 65.1
PGR142G4151 Punica granatum HOM05D003476 ORTHO05D004057 1.8e-22 109.0 81 65.4
SalBow6G1938 Salvia bowleyana HOM05D003476 ORTHO05D004057 1.8e-22 109.0 74 70.3
FvH4_7g24030 Fragaria vesca HOM05D003476 ORTHO05D004057 2.4e-22 108.6 72 69.4
FAN01G1497 Fragaria x ananassa HOM05D003476 ORTHO05D004057 2.4e-22 108.6 72 69.4
FAN06G4561 Fragaria x ananassa HOM05D003476 ORTHO05D004057 2.4e-22 108.6 72 69.4
VMungo0647G2503 Vigna mungo HOM05D003476 ORTHO05D004057 2.4e-22 108.6 74 73.0
unitig_747.g21420 Utricularia gibba HOM05D003476 ORTHO05D004057 3.1e-22 108.2 75 70.7
FAN03G0251 Fragaria x ananassa HOM05D003476 ORTHO05D004057 4.0e-22 107.8 72 68.1
HanXRQChr08g0222281 Helianthus annuus HOM05D003476 ORTHO05D004057 4.0e-22 107.8 81 65.4
RcHm_v2.0_Chr1g0369421 Rosa chinensis HOM05D003476 ORTHO05D004057 4.0e-22 107.8 75 68.0
Eucgr.G03033 Eucalyptus grandis HOM05D003476 ORTHO05D004057 5.3e-22 107.5 75 68.0
Glyma.02G254500 Glycine max HOM05D003476 ORTHO05D004057 5.3e-22 107.5 74 71.6
Nitab4.5_0000099g0220 Nicotiana tabacum HOM05D003476 ORTHO05D004057 5.3e-22 107.5 81 67.9
Nitab4.5_0003770g0040 Nicotiana tabacum HOM05D003476 ORTHO05D004057 5.3e-22 107.5 81 67.9
BcaC01g05451 Brassica carinata HOM05D003476 ORTHO05D004057 6.9e-22 107.1 75 68.0
A03p22400 Brassica napus HOM05D003476 ORTHO05D004057 6.9e-22 107.1 75 68.0
C03p26520 Brassica napus HOM05D003476 ORTHO05D004057 6.9e-22 107.1 75 68.0
BraA03t11468Z Brassica rapa HOM05D003476 ORTHO05D004057 6.9e-22 107.1 75 66.7
Oeu039001.1 Olea europaea HOM05D003476 ORTHO05D004057 6.9e-22 107.1 83 66.3
PSO801G0598 Papaver somniferum HOM05D003476 ORTHO05D004057 6.9e-22 107.1 81 63.0
THA.LOC104824307 Tarenaya hassleriana HOM05D003476 ORTHO05D004057 6.9e-22 107.1 75 65.3
arahy.Tifrunner.gnm1.ann1.7TWC5I Arachis hypogaea HOM05D003476 ORTHO05D004057 9.0e-22 106.7 74 70.3
arahy.Tifrunner.gnm1.ann1.C86U5P Arachis hypogaea HOM05D003476 ORTHO05D004057 9.0e-22 106.7 74 70.3
Solyc04g072032.1 Solanum lycopersicum HOM05D003476 ORTHO05D004057 9.0e-22 106.7 72 75.0
A04p30180 Brassica napus HOM05D003476 ORTHO05D004057 1.2e-21 106.3 75 65.3
LjContig00357g0022102 Lotus japonicus HOM05D003476 ORTHO05D004057 1.2e-21 106.3 74 67.6
Sp4g22270 Schrenkiella parvula HOM05D003476 ORTHO05D004057 1.2e-21 106.3 75 66.7
BcaB06g29118 Brassica carinata HOM05D003476 ORTHO05D004057 1.5e-21 105.9 75 65.3
BcaC02g07386 Brassica carinata HOM05D003476 ORTHO05D004057 1.5e-21 105.9 75 65.3
BolC4t28272H Brassica oleracea HOM05D003476 ORTHO05D004057 1.5e-21 105.9 75 65.3
Oeu039509.1 Olea europaea HOM05D003476 ORTHO05D004057 1.5e-21 105.9 83 63.9
Sed0008497 Sechium edule HOM05D003476 ORTHO05D004057 1.5e-21 105.9 72 70.8
Thecc.10G026100 Theobroma cacao HOM05D003476 ORTHO05D004057 1.5e-21 105.9 72 69.4
Aqoxy4G02660 Aquilegia oxysepala HOM05D003476 ORTHO05D004057 2.0e-21 105.5 70 71.4
AL4G37540 Arabidopsis lyrata HOM05D003476 ORTHO05D004057 2.0e-21 105.5 75 66.7
CANSAT56G1382 Cannabis sativa HOM05D003476 ORTHO05D004057 2.0e-21 105.5 72 68.1
Ca_05932_v3 Cicer arietinum L. HOM05D003476 ORTHO05D004057 2.0e-21 105.5 74 70.3
PSO339G6737 Papaver somniferum HOM05D003476 ORTHO05D004057 2.0e-21 105.5 81 61.7
Rhsim13G0104300 Rhododendron simsii HOM05D003476 ORTHO05D004057 2.0e-21 105.5 75 66.7
THA.LOC104810073 Tarenaya hassleriana HOM05D003476 ORTHO05D004057 2.0e-21 105.5 74 63.5
CiPaw.01G295800 Carya illinoinensis HOM05D003476 ORTHO05D004057 2.6e-21 105.1 72 69.4
CiPaw.02G189900 Carya illinoinensis HOM05D003476 ORTHO05D004057 2.6e-21 105.1 75 66.7
Migut.F01426 Erythranthe guttata HOM05D003476 ORTHO05D004057 2.6e-21 105.1 83 63.9
Gohir.D10G243900 Gossypium hirsutum HOM05D003476 ORTHO05D004057 2.6e-21 105.1 75 66.7
ClCG07G004000 Citrullus lanatus HOM05D003476 ORTHO05D004057 3.4e-21 104.8 72 69.4
ClCG07G004010 Citrullus lanatus HOM05D003476 ORTHO05D004057 3.4e-21 104.8 72 69.4
Lsat_1_v5_gn_5_2880 Lactuca sativa HOM05D003476 ORTHO05D004057 3.4e-21 104.8 80 65.0
RcHm_v2.0_Chr6g0299621 Rosa chinensis HOM05D003476 ORTHO05D004057 3.4e-21 104.8 83 62.7
PGSC0003DMG400025078 Solanum tuberosum HOM05D003476 ORTHO05D004057 3.4e-21 104.8 80 68.8
AT2G39960 Arabidopsis thaliana HOM05D003476 ORTHO05D004057 4.5e-21 104.4 75 65.3
Potri.010G192700 Populus trichocarpa HOM05D003476 ORTHO05D004057 4.5e-21 104.4 74 66.2
SEGI_14870 Sequoiadendron giganteum HOM05D003476 ORTHO05D004057 4.5e-21 104.4 81 64.2
vmacro10062 Vaccinium macrocarpon HOM05D003476 ORTHO05D004057 4.5e-21 104.4 75 66.7
COL.COLO4_25658 Corchorus olitorius HOM05D003476 ORTHO05D004057 5.8e-21 104.0 75 65.3
Prupe.1G392100 Prunus persica HOM05D003476 ORTHO05D004057 5.8e-21 104.0 81 64.2
TWI09G0086 Tripterygium wilfordii HOM05D003476 ORTHO05D004057 5.8e-21 104.0 72 66.7
TWI23G0971 Tripterygium wilfordii HOM05D003476 ORTHO05D004057 5.8e-21 104.0 72 66.7
TWI53G1335 Tripterygium wilfordii HOM05D003476 ORTHO05D004057 5.8e-21 104.0 72 65.3
Actinidia13919 Actinidia chinensis HOM05D003476 ORTHO05D004057 7.6e-21 103.6 75 65.3
Cpa.g.c40050 Carica papaya HOM05D003476 ORTHO05D004057 7.6e-21 103.6 74 64.9
Sed0009203 Sechium edule HOM05D003476 ORTHO05D004057 7.6e-21 103.6 72 68.1
Sopen04g028030 Solanum pennellii HOM05D003476 ORTHO05D004057 7.6e-21 103.6 80 68.8
BcaB02g09065 Brassica carinata HOM05D003476 ORTHO05D004057 1.0e-20 103.2 75 64.0
MD08G1058400 Malus domestica HOM05D003476 ORTHO05D004057 1.0e-20 103.2 81 61.7
Sabra08G0047500 Salix brachista HOM05D003476 ORTHO05D004057 1.0e-20 103.2 74 66.2
TPR.G8041 Trifolium pratense HOM05D003476 ORTHO05D004057 1.0e-20 103.2 74 67.6
Thhalv10017265m.g Eutrema salsugineum HOM05D003476 ORTHO05D004057 1.3e-20 102.8 71 69.0
Sp6g04580 Schrenkiella parvula HOM05D003476 ORTHO05D004057 1.3e-20 102.8 72 66.7
Atru.chr12.241 Acer truncatum HOM05D003476 ORTHO05D004057 1.7e-20 102.4 83 60.2
Carub.0004s2209 Capsella rubella HOM05D003476 ORTHO05D004057 1.7e-20 102.4 75 62.7
CARHR134890 Cardamine hirsuta HOM05D003476 ORTHO05D004057 1.7e-20 102.4 75 65.3
MELO3C025156.2 Cucumis melo HOM05D003476 ORTHO05D004057 1.7e-20 102.4 70 70.0
LjContig00357g0025168 Lotus japonicus HOM05D003476 ORTHO05D004057 1.7e-20 102.4 74 63.5
Potri.008G064700 Populus trichocarpa HOM05D003476 ORTHO05D004057 1.7e-20 102.4 74 64.9
A05p06460 Brassica napus HOM05D003476 ORTHO05D004057 2.2e-20 102.1 75 62.7
Carub.0006s3211 Capsella rubella HOM05D003476 ORTHO05D004057 2.2e-20 102.1 75 64.0
Actinidia00934 Actinidia chinensis HOM05D003476 ORTHO05D004057 3.8e-20 101.3 73 67.1
AL6G47820 Arabidopsis lyrata HOM05D003476 ORTHO05D004057 3.8e-20 101.3 75 62.7
Cc02_g06900 Coffea canephora HOM05D003476 ORTHO05D004057 3.8e-20 101.3 81 63.0
Gorai.011G280300 Gossypium raimondii HOM05D003476 ORTHO05D004057 3.8e-20 101.3 73 67.1
CAN.G1252.7 Capsicum annuum HOM05D003476 ORTHO05D004057 6.5e-20 100.5 81 63.0
CARHR253320 Cardamine hirsuta HOM05D003476 ORTHO05D004057 6.5e-20 100.5 75 61.3
Gohir.A10G229700 Gossypium hirsutum HOM05D003476 ORTHO05D004057 6.5e-20 100.5 75 66.7
Medtr5g081900 Medicago truncatula HOM05D003476 ORTHO05D004057 6.5e-20 100.5 72 65.3
Os04g0446300 Oryza sativa ssp. japonica HOM05D003476 ORTHO05D004057 6.5e-20 100.5 84 61.9
TWI73G1058 Tripterygium wilfordii HOM05D003476 ORTHO05D004057 6.5e-20 100.5 72 63.9
Zm00001eb081650 Zea mays HOM05D003476 ORTHO05D004057 6.5e-20 100.5 84 61.9
Sc06g0000400 Simmondsia chinensis HOM05D003476 ORTHO05D004057 8.4e-20 100.1 75 61.3
DCAR_011789 Daucus carota HOM05D003476 ORTHO05D004057 1.1e-19 99.8 81 60.5
ECA238G4332 Erigeron canadensis HOM05D003476 ORTHO05D004057 1.1e-19 99.8 83 61.4
MD15G1038100 Malus domestica HOM05D003476 ORTHO05D004057 1.1e-19 99.8 81 59.3
Thhalv10028970m.g Eutrema salsugineum HOM05D003476 ORTHO05D004057 1.4e-19 99.4 81 60.5
FAN15G1698 Fragaria x ananassa HOM05D003476 ORTHO05D004057 1.4e-19 99.4 78 64.1
Lj1A950T61 Lonicera japonica HOM05D003476 ORTHO05D004057 1.4e-19 99.4 75 64.0
TWI73G1048 Tripterygium wilfordii HOM05D003476 ORTHO05D004057 1.9e-19 99.0 72 62.5
EL10Ac2g04131 Beta vulgaris HOM05D003476 ORTHO05D004057 5.5e-19 97.4 80 57.5
Os02g0565200 Oryza sativa ssp. japonica HOM05D003476 ORTHO05D004057 7.1e-19 97.1 83 60.2
Hma1.2p1_0710F.1_g207290 Hydrangea macrophylla HOM05D003476 ORTHO05D004057 2.7e-18 95.1 82 58.5
Aqoxy214s003 Aquilegia oxysepala HOM05D003476 ORTHO05D004057 1.0e-17 93.2 63 66.7
Duzib106G0197 Durio zibethinus HOM05D003476 ORTHO05D004057 1.0e-17 93.2 75 58.7
vmacro06993 Vaccinium macrocarpon HOM05D003476 ORTHO05D004057 1.1e-16 89.7 65 64.6
Mapoly0043s0045 Marchantia polymorpha HOM05D003476 ORTHO05D004057 1.9e-16 89.0 73 57.5
Pp3c24_20710 Physcomitrium patens HOM05D003476 ORTHO05D004057 3.3e-16 88.2 71 63.4
Pp3c8_24950 Physcomitrium patens HOM05D003476 ORTHO05D004057 4.3e-16 87.8 71 60.6
MBI14_g25462_MAGBIO Magnolia biondii HOM05D003476 ORTHO05D004057 2.8e-15 85.1 69 63.8
MBI14_g30458_MAGBIO Magnolia biondii HOM05D003476 ORTHO05D000010 2.8e-15 85.1 69 63.8
AagrBONN_evm.TU.Sc2ySwM_228.5500 Anthoceros agrestis HOM05D003476 ORTHO05D004057 8.2e-15 83.6 80 50.0
SpUn0110_0020 Schrenkiella parvula HOM05D003476 ORTHO05D004057 2.0e-13 79.0 61 62.3
MBI16_g28612_MAGBIO Magnolia biondii HOM05D003476 ORTHO05D000010 1.7e-12 75.9 75 48.0
BraA05t19614Z Brassica rapa HOM05D003476 ORTHO05D004057 2.9e-12 75.1 67 53.7
AT4G04200 Arabidopsis thaliana HOM05D003476 ORTHO05D004057 6.5e-12 73.9 64 57.8
AUR62031591 Chenopodium quinoa HOM05D003476 ORTHO05D004057 7.2e-11 70.5 69 52.2
Ah.10g035550 Amaranthus hybridus HOM05D003476 ORTHO05D004057 9.4e-11 70.1 72 55.6
Aa31LG5G19650 Aethionema arabicum HOM05D003476 ORTHO05D004057 1.2e-10 69.7 64 53.1
ECA233G2895 Erigeron canadensis HOM05D003476 ORTHO05D004057 1.2e-10 69.7 49 69.4
CsaV3_5G008920 Cucumis sativus L. HOM05D003476 ORTHO05D004057 1.6e-10 69.3 63 54.0
AUR62012465 Chenopodium quinoa HOM05D003476 ORTHO05D004057 2.7e-10 68.6 63 54.0
Ah.16g104950 Amaranthus hybridus HOM05D003476 ORTHO05D004057 1.8e-09 65.9 73 52.1
C04p67700 Brassica napus HOM05D003476 ORTHO05D004057 2.3e-09 65.5 54 57.4
Duzib114G0190 Durio zibethinus HOM05D003476 ORTHO05D004057 6.7e-09 63.9 59 54.2
MD07G1214300 Malus domestica HOM05D003476 ORTHO05D004057 8.8e-09 63.5 36 80.6
C04p07540 Brassica napus HOM05D003476 ORTHO05D004057 3.3e-08 61.6 54 53.7
BolC4t22371H Brassica oleracea HOM05D003476 ORTHO05D004057 3.3e-08 61.6 54 53.7
MBI14_g06613_MAGBIO Magnolia biondii HOM05D003476 ORTHO05D000010 1.7e-07 59.3 39 69.2
Migut.F01424 Erythranthe guttata HOM05D003476 ORTHO05D004057 1.1e-06 56.6 36 69.4
CDE04G3620 Ceratophyllum demersum HOM05D003476 ORTHO05D004057 1.8e-06 55.8 46 60.9
Sc09g0010500 Simmondsia chinensis HOM05D003476 ORTHO05D004057 1.8e-06 55.8 36 66.7
Aqoxy2G00973 Aquilegia oxysepala HOM05D003476 ORTHO05D004057 2.4e-06 55.5 41 61.0


User provided reference genes

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