Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0618G022 Amborella trichopoda HOM05D004806 ORTHO05D005397 3.1e-145 518.5 267 100.0
Dinv20955 Davidia involucrata HOM05D004806 ORTHO05D005397 6.0e-80 301.6 268 62.7
Dinv20988 Davidia involucrata HOM05D004806 ORTHO05D005397 6.0e-80 301.6 268 62.7
TAR369G0441 Trochodendron aralioides HOM05D004806 ORTHO05D005397 1.9e-78 296.6 263 60.8
Nn2g11386 Nelumbo nucifera HOM05D004806 ORTHO05D005397 4.3e-78 295.4 262 61.1
Nn2g13619 Nelumbo nucifera HOM05D004806 ORTHO05D005397 4.8e-77 292.0 268 62.3
MBI14_g36885_MAGBIO Magnolia biondii HOM05D004806 ORTHO05D005397 8.1e-77 291.2 267 60.7
Actinidia33944 Actinidia chinensis HOM05D004806 ORTHO05D005397 9.0e-76 287.7 263 59.7
Cc02_g06920 Coffea canephora HOM05D004806 ORTHO05D005397 5.8e-75 285.0 263 58.2
Dinv34423 Davidia involucrata HOM05D004806 ORTHO05D005397 6.4e-74 281.6 263 60.1
AUR62022839 Chenopodium quinoa HOM05D004806 ORTHO05D005397 1.9e-73 280.0 267 58.1
vmacro06995 Vaccinium macrocarpon HOM05D004806 ORTHO05D005397 1.9e-73 280.0 265 58.9
Aqoxy4G02663 Aquilegia oxysepala HOM05D004806 ORTHO05D005397 3.2e-73 279.3 263 58.9
Sc11g0007270 Simmondsia chinensis HOM05D004806 ORTHO05D005397 9.3e-73 277.7 263 58.9
TWI53G0900 Tripterygium wilfordii HOM05D004806 ORTHO05D005397 9.3e-73 277.7 264 57.6
PGR142G0174 Punica granatum HOM05D004806 ORTHO05D005397 2.1e-72 276.6 269 58.4
Potri.008G064500 Populus trichocarpa HOM05D004806 ORTHO05D005397 2.7e-72 276.2 265 59.2
CSS0019944 Camellia sinensis var. sinensis HOM05D004806 ORTHO05D005397 3.5e-72 275.8 266 57.5
Potri.010G192800 Populus trichocarpa HOM05D004806 ORTHO05D005397 7.9e-72 274.6 264 57.6
MD01G1147200 Malus domestica HOM05D004806 ORTHO05D005397 3.0e-71 272.7 260 56.5
Gorai.011G280200 Gossypium raimondii HOM05D004806 ORTHO05D005397 5.1e-71 271.9 258 56.6
Gohir.D10G243800 Gossypium hirsutum HOM05D004806 ORTHO05D005397 6.6e-71 271.6 258 56.2
Gohir.D06G170100 Gossypium hirsutum HOM05D004806 ORTHO05D005397 1.5e-70 270.4 261 57.9
Gohir.A10G229600 Gossypium hirsutum HOM05D004806 ORTHO05D005397 2.5e-70 269.6 258 56.6
Sabra08G0047400 Salix brachista HOM05D004806 ORTHO05D005397 4.3e-70 268.9 258 57.4
Gohir.A06G164600 Gossypium hirsutum HOM05D004806 ORTHO05D005397 7.3e-70 268.1 261 57.5
Gorai.010G199100 Gossypium raimondii HOM05D004806 ORTHO05D005397 1.3e-69 267.3 261 57.1
Sc11g0006990 Simmondsia chinensis HOM05D004806 ORTHO05D005397 1.3e-69 267.3 197 68.5
GSVIVG01016366001 Vitis vinifera HOM05D004806 ORTHO05D005397 2.1e-69 266.5 189 69.8
AUR62012206 Chenopodium quinoa HOM05D004806 ORTHO05D005397 3.6e-69 265.8 266 56.0
Duzib106G0751 Durio zibethinus HOM05D004806 ORTHO05D005397 4.8e-69 265.4 258 55.4
Peaxi162Scf00401g00118 Petunia axillaris HOM05D004806 ORTHO05D005397 6.2e-69 265.0 268 54.1
Thecc.10G026200 Theobroma cacao HOM05D004806 ORTHO05D005397 1.1e-68 264.2 258 55.0
Ciclev10030877m.g Citrus clementina HOM05D004806 ORTHO05D005397 1.8e-68 263.5 269 55.4
Manes.10G017800 Manihot esculenta HOM05D004806 ORTHO05D005397 2.4e-68 263.1 262 55.0
FvH4_7g24020 Fragaria vesca HOM05D004806 ORTHO05D005397 3.1e-68 262.7 270 53.3
Prupe.2G246100 Prunus persica HOM05D004806 ORTHO05D005397 4.0e-68 262.3 265 55.5
Ah.10g036410 Amaranthus hybridus HOM05D004806 ORTHO05D005397 5.3e-68 261.9 265 55.5
ECA238G2978 Erigeron canadensis HOM05D004806 ORTHO05D005397 5.3e-68 261.9 263 55.1
FAN06G0754 Fragaria x ananassa HOM05D004806 ORTHO05D005397 5.3e-68 261.9 270 53.0
Duzib114G0963 Durio zibethinus HOM05D004806 ORTHO05D005397 6.9e-68 261.5 260 56.5
Lsat_1_v5_gn_2_121900 Lactuca sativa HOM05D004806 ORTHO05D005397 6.9e-68 261.5 262 56.1
FAN03G1683 Fragaria x ananassa HOM05D004806 ORTHO05D005397 9.0e-68 261.2 266 52.6
HPP92_018194 Vanilla planifolia HOM05D004806 ORTHO05D005397 9.0e-68 261.2 263 53.2
CiPaw.02G189800 Carya illinoinensis HOM05D004806 ORTHO05D005397 2.6e-67 259.6 260 56.9
Lj1C950G18 Lonicera japonica HOM05D004806 ORTHO05D005397 2.6e-67 259.6 293 52.6
RcHm_v2.0_Chr1g0369401 Rosa chinensis HOM05D004806 ORTHO05D005397 2.6e-67 259.6 265 53.6
THA.LOC104824306 Tarenaya hassleriana HOM05D004806 ORTHO05D005397 2.6e-67 259.6 262 53.4
Nitab4.5_0000737g0020 Nicotiana tabacum HOM05D004806 ORTHO05D005397 5.8e-67 258.5 262 53.8
Actinidia29677 Actinidia chinensis HOM05D004806 ORTHO05D005397 1.7e-66 256.9 263 53.6
Hund13832 Selenicereus undatus HOM05D004806 ORTHO05D005397 1.7e-66 256.9 291 52.6
HanXRQChr14g0459971 Helianthus annuus HOM05D004806 ORTHO05D005397 2.2e-66 256.5 267 54.3
Aqoxy2G00978 Aquilegia oxysepala HOM05D004806 ORTHO05D005397 3.8e-66 255.8 212 62.3
CiPaw.01G295700 Carya illinoinensis HOM05D004806 ORTHO05D005397 4.9e-66 255.4 206 62.6
FAN10G3438 Fragaria x ananassa HOM05D004806 ORTHO05D005397 4.9e-66 255.4 266 51.9
arahy.Tifrunner.gnm1.ann1.13YYB8 Arachis hypogaea HOM05D004806 ORTHO05D005397 6.4e-66 255.0 266 53.0
MELO3C008275.2 Cucumis melo HOM05D004806 ORTHO05D005397 6.4e-66 255.0 265 54.3
Glyma.14G062000 Glycine max HOM05D004806 ORTHO05D005397 6.4e-66 255.0 264 53.0
Sed0002029 Sechium edule HOM05D004806 ORTHO05D005397 6.4e-66 255.0 263 54.4
Oeu055830.1 Olea europaea HOM05D004806 ORTHO05D005397 8.4e-66 254.6 264 55.3
arahy.Tifrunner.gnm1.ann1.76KK00 Arachis hypogaea HOM05D004806 ORTHO05D005397 1.1e-65 254.2 266 53.0
Sopen05g031160 Solanum pennellii HOM05D004806 ORTHO05D005397 1.9e-65 253.4 261 52.1
QL08p062653 Quercus lobata HOM05D004806 ORTHO05D005397 3.2e-65 252.7 317 47.9
Solyc05g052630.4 Solanum lycopersicum HOM05D004806 ORTHO05D005397 3.2e-65 252.7 261 51.7
PGSC0003DMG400027178 Solanum tuberosum HOM05D004806 ORTHO05D005397 3.2e-65 252.7 261 52.5
CDE02G2339 Ceratophyllum demersum HOM05D004806 ORTHO05D005397 4.2e-65 252.3 264 53.4
Ca_05931_v3 Cicer arietinum L. HOM05D004806 ORTHO05D005397 7.1e-65 251.5 265 53.6
VMungo0647G1582 Vigna mungo HOM05D004806 ORTHO05D005397 2.1e-64 250.0 265 54.0
Phvul.008G226400 Phaseolus vulgaris HOM05D004806 ORTHO05D005397 2.7e-64 249.6 265 52.5
LjContig00357g0026481 Lotus japonicus HOM05D004806 ORTHO05D005397 6.0e-64 248.4 262 54.2
Medtr5g081880 Medicago truncatula HOM05D004806 ORTHO05D005397 6.0e-64 248.4 265 52.5
PSO801G0450 Papaver somniferum HOM05D004806 ORTHO05D005397 6.0e-64 248.4 251 56.6
AT2G39950 Arabidopsis thaliana HOM05D004806 ORTHO05D005397 1.3e-63 247.3 266 50.8
Nitab4.5_0003720g0010 Nicotiana tabacum HOM05D004806 ORTHO05D005397 1.8e-63 246.9 291 49.1
Rhsim03G0140100 Rhododendron simsii HOM05D004806 ORTHO05D005397 1.8e-63 246.9 272 51.5
TPR.G8038 Trifolium pratense HOM05D004806 ORTHO05D005397 1.8e-63 246.9 269 51.3
Migut.F01427 Erythranthe guttata HOM05D004806 ORTHO05D005397 3.0e-63 246.1 262 55.7
DCAR_027553 Daucus carota HOM05D004806 ORTHO05D005397 8.7e-63 244.6 264 54.2
Psat2g035600 Pisum sativum HOM05D004806 ORTHO05D005397 8.7e-63 244.6 259 52.5
HanXRQChr08g0222261 Helianthus annuus HOM05D004806 ORTHO05D005397 1.1e-62 244.2 231 56.7
Atru.chr12.242 Acer truncatum HOM05D004806 ORTHO05D005397 2.5e-62 243.0 265 53.2
SGA_v2.0_scaffold343G49443 Striga asiatica HOM05D004806 ORTHO05D005397 9.6e-62 241.1 268 53.0
Hund15980 Selenicereus undatus HOM05D004806 ORTHO05D005397 1.3e-61 240.7 321 44.9
Carub.0004s2208 Capsella rubella HOM05D004806 ORTHO05D005397 1.6e-61 240.4 268 50.4
AL4G37530 Arabidopsis lyrata HOM05D004806 ORTHO05D005397 2.1e-61 240.0 260 50.8
Sp4g22260 Schrenkiella parvula HOM05D004806 ORTHO05D005397 2.8e-61 239.6 258 50.4
Zm00001eb297980 Zea mays HOM05D004806 ORTHO05D005397 2.8e-61 239.6 271 50.2
Ah.16g103100 Amaranthus hybridus HOM05D004806 ORTHO05D005397 6.2e-61 238.4 264 54.5
SalBow6G1361 Salvia bowleyana HOM05D004806 ORTHO05D005397 8.1e-61 238.0 290 51.4
FAN01G2868 Fragaria x ananassa HOM05D004806 ORTHO05D005397 1.4e-60 237.3 320 45.0
SalBow6G1823 Salvia bowleyana HOM05D004806 ORTHO05D005397 1.4e-60 237.3 290 51.4
Eucgr.G03032 Eucalyptus grandis HOM05D004806 ORTHO05D005397 2.4e-60 236.5 262 51.1
HanXRQChr07g0200671 Helianthus annuus HOM05D004806 ORTHO05D005397 4.0e-60 235.7 216 59.7
Thhalv10017559m.g Eutrema salsugineum HOM05D004806 ORTHO05D005397 6.9e-60 235.0 266 50.0
Lsat_1_v5_gn_8_12421 Lactuca sativa HOM05D004806 ORTHO05D005397 1.2e-59 234.2 258 53.1
PSO339G2633 Papaver somniferum HOM05D004806 ORTHO05D005397 1.2e-59 234.2 277 50.9
Lalb_Chr04g0250791 Lupinus albus HOM05D004806 ORTHO05D005397 2.6e-59 233.0 284 49.6
BraA05t19615Z Brassica rapa HOM05D004806 ORTHO05D005397 3.4e-59 232.6 210 56.7
Aa31LG5G19660 Aethionema arabicum HOM05D004806 ORTHO05D005397 1.3e-58 230.7 270 48.9
Nitab4.5_0004338g0050 Nicotiana tabacum HOM05D004806 ORTHO05D005397 4.9e-58 228.8 262 50.8
CDE09G0712 Ceratophyllum demersum HOM05D004806 ORTHO05D005397 6.5e-58 228.4 190 60.5
C04p07550 Brassica napus HOM05D004806 ORTHO05D005397 2.5e-57 226.5 266 49.6
BolC4t22372H Brassica oleracea HOM05D004806 ORTHO05D005397 2.5e-57 226.5 266 49.6
EL10Ac2g04786 Beta vulgaris HOM05D004806 ORTHO05D005397 6.0e-56 221.9 375 40.3
SGA_v2.0_scaffold76G25081 Striga asiatica HOM05D004806 ORTHO05D005397 7.4e-54 214.9 334 43.7
COL.COLO4_25659 Corchorus olitorius HOM05D004806 ORTHO05D005397 4.8e-53 212.2 258 47.7
Mapoly0096s0071 Marchantia polymorpha HOM05D004806 ORTHO05D005397 1.4e-52 210.7 206 52.4
Nitab4.5_0002100g0120 Nicotiana tabacum HOM05D004806 ORTHO05D005397 5.9e-51 205.3 262 47.3
CsaV3_6G001640 Cucumis sativus L. HOM05D004806 ORTHO05D005397 1.0e-50 204.5 229 52.4
ClCG11G006350 Citrullus lanatus HOM05D004806 ORTHO05D005397 2.2e-50 203.4 228 51.3
unitig_52.g16836 Utricularia gibba HOM05D004806 ORTHO05D005397 2.9e-50 203.0 301 43.5
AagrBONN_evm.TU.Sc2ySwM_368.289 Anthoceros agrestis HOM05D004806 ORTHO05D005397 3.5e-48 196.1 183 54.1
CBR_g37391 Chara braunii HOM05D004806 ORTHO05D005397 7.4e-46 188.3 195 47.2
SMO358G0301 Selaginella moellendorffii HOM05D004806 ORTHO05D005397 3.6e-40 169.5 168 52.4
Haze_17182 Corylus avellana HOM05D004806 ORTHO05D005397 6.9e-36 155.2 212 46.7
Oeu036630.1 Olea europaea HOM05D004806 ORTHO05D005397 8.5e-34 148.3 184 47.3
TAR623G1028 Trochodendron aralioides HOM05D004806 ORTHO05D005397 1.2e-32 144.4 144 56.2
ATR0723G011 Amborella trichopoda HOM05D004806 ORTHO05D005397 4.7e-32 142.5 72 93.1
Sed0010788 Sechium edule HOM05D004806 ORTHO05D005397 1.1e-30 137.9 182 47.3
Lalb_Chr17g0346601 Lupinus albus HOM05D004806 ORTHO05D005397 3.7e-29 132.9 188 44.1
CARHR134870 Cardamine hirsuta HOM05D004806 ORTHO05D005397 1.8e-28 130.6 187 42.8
AagrBONN_evm.TU.Sc2ySwM_369.624 Anthoceros agrestis HOM05D004806 ORTHO05D005397 3.8e-26 122.9 107 54.2
Sabra10G0148400 Salix brachista HOM05D004806 ORTHO05D005397 5.0e-26 122.5 75 76.0
Oeu059753.1 Olea europaea HOM05D004806 ORTHO05D005397 8.5e-26 121.7 75 74.7
MD07G1214200 Malus domestica HOM05D004806 ORTHO05D005397 1.1e-25 121.3 75 76.0
A05p06470 Brassica napus HOM05D004806 ORTHO05D005397 2.7e-24 116.7 75 72.0
Os07g0100500 Oryza sativa ssp. japonica HOM05D004806 ORTHO05D005397 1.5e-22 110.9 74 68.9
BcaB02g09066 Brassica carinata HOM05D004806 ORTHO05D005397 4.4e-22 109.4 184 41.3
Glyma.02G254400 Glycine max HOM05D004806 ORTHO05D005397 1.7e-21 107.5 149 45.0
Lalb_Chr17g0346611 Lupinus albus HOM05D004806 ORTHO05D005397 2.8e-21 106.7 75 68.0
SHI03526 Sapria himalayana HOM05D004806 ORTHO05D005397 1.1e-20 104.8 75 61.3
SHI03525 Sapria himalayana HOM05D004806 ORTHO05D005397 2.4e-20 103.6 196 39.3
Zm00001eb057510 Zea mays HOM05D004806 ORTHO05D005397 6.8e-15 85.5 76 56.6
Pp3c26_8620 Physcomitrium patens HOM05D004806 ORTHO05D005397 6.3e-13 79.0 154 36.4
RcHm_v2.0_Chr1g0313541 Rosa chinensis HOM05D004806 ORTHO05D005397 1.5e-09 67.8 58 56.9
Oeu043075.1 Olea europaea HOM05D004806 ORTHO05D005397 1.6e-08 64.3 35 82.9
CAN.G853.43 Capsicum annuum HOM05D004806 ORTHO05D005397 2.7e-08 63.5 53 58.5
Haze_17183 Corylus avellana HOM05D004806 ORTHO05D005397 3.6e-08 63.2 47 68.1
MBI19_g13733_MAGBIO Magnolia biondii HOM05D003847 ORTHO05D011443 6.1e-08 62.4 39 71.8
Oeu021121.1 Olea europaea HOM05D004806 ORTHO05D005397 3.0e-07 60.1 42 64.3
Manes.07G125400 Manihot esculenta HOM05D004806 ORTHO05D005397 5.2e-07 59.3 107 41.1
SalBow6G4818 Salvia bowleyana HOM05D004806 ORTHO05D005397 6.8e-07 58.9 36 77.8


User provided reference genes

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