Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0609G130 Amborella trichopoda HOM05D006725 ORTHO05D008223 6.3e-100 367.5 190 100.0
Nn4g22406 Nelumbo nucifera HOM05D006725 ORTHO05D008223 1.1e-51 207.2 144 68.1
TAR374G1568 Trochodendron aralioides HOM05D006725 ORTHO05D008223 7.9e-50 201.1 121 75.2
Aqoxy5G03519 Aquilegia oxysepala HOM05D006725 ORTHO05D008223 4.3e-48 195.3 123 71.5
Aqoxy5G03514 Aquilegia oxysepala HOM05D006725 ORTHO05D008223 1.5e-45 186.8 119 69.7
Duzib248G0208 Durio zibethinus HOM05D006725 ORTHO05D008223 2.0e-45 186.4 180 55.6
Potri.008G105700 Populus trichocarpa HOM05D006725 ORTHO05D008223 2.0e-45 186.4 157 57.3
Dinv14799 Davidia involucrata HOM05D006725 ORTHO05D008223 2.6e-45 186.0 171 56.1
HPP92_021374 Vanilla planifolia HOM05D006725 ORTHO05D008223 3.4e-45 185.7 135 64.4
Thecc.02G274200 Theobroma cacao HOM05D006725 ORTHO05D008223 4.5e-45 185.3 180 55.6
Actinidia08088 Actinidia chinensis HOM05D006725 ORTHO05D008223 7.6e-45 184.5 156 57.7
Gorai.005G171500 Gossypium raimondii HOM05D006725 ORTHO05D008223 9.9e-45 184.1 180 54.4
ClCG08G017310 Citrullus lanatus HOM05D006725 ORTHO05D008223 2.9e-44 182.6 173 55.5
Atru.chr11.2260 Acer truncatum HOM05D006725 ORTHO05D008223 3.8e-44 182.2 143 65.0
RcHm_v2.0_Chr4g0431131 Rosa chinensis HOM05D006725 ORTHO05D008223 3.8e-44 182.2 143 60.8
TWI18G0344 Tripterygium wilfordii HOM05D006725 ORTHO05D008223 3.8e-44 182.2 121 67.8
Gohir.A03G128700 Gossypium hirsutum HOM05D006725 ORTHO05D008223 4.9e-44 181.8 166 57.2
Gohir.D02G152500 Gossypium hirsutum HOM05D006725 ORTHO05D008223 6.4e-44 181.4 180 53.9
Atru.chr11.2245 Acer truncatum HOM05D006725 ORTHO05D008223 8.4e-44 181.0 140 65.7
CSS0023056 Camellia sinensis var. sinensis HOM05D006725 ORTHO05D008223 1.1e-43 180.6 145 58.6
COL.COLO4_23620 Corchorus olitorius HOM05D006725 ORTHO05D008223 1.1e-43 180.6 180 54.4
PSO063G2169 Papaver somniferum HOM05D006725 ORTHO05D008223 7.1e-43 177.9 192 51.6
PSO782G3390 Papaver somniferum HOM05D006725 ORTHO05D008223 1.2e-42 177.2 188 52.1
vmacro01086 Vaccinium macrocarpon HOM05D006725 ORTHO05D008223 1.6e-42 176.8 147 59.9
Ca_16483_v3 Cicer arietinum L. HOM05D006725 ORTHO05D008223 2.7e-42 176.0 144 59.0
Haze_12368 Corylus avellana HOM05D006725 ORTHO05D008223 2.7e-42 176.0 157 59.2
MD16G1111700 Malus domestica HOM05D006725 ORTHO05D008223 2.7e-42 176.0 158 57.0
Lsat_1_v5_gn_4_2821 Lactuca sativa HOM05D006725 ORTHO05D008223 3.5e-42 175.6 142 59.2
MD13G1112100 Malus domestica HOM05D006725 ORTHO05D008223 3.5e-42 175.6 153 58.2
Manes.13G015700 Manihot esculenta HOM05D006725 ORTHO05D008223 4.6e-42 175.3 136 62.5
Phvul.001G259500 Phaseolus vulgaris HOM05D006725 ORTHO05D008223 4.6e-42 175.3 123 62.6
CiPaw.05G115200 Carya illinoinensis HOM05D006725 ORTHO05D008223 6.0e-42 174.9 147 57.8
Prupe.1G233300 Prunus persica HOM05D006725 ORTHO05D008223 7.9e-42 174.5 164 56.1
THA.LOC104825521 Tarenaya hassleriana HOM05D006725 ORTHO05D008223 1.3e-41 173.7 161 56.5
CANSAT56G1091 Cannabis sativa HOM05D006725 ORTHO05D008223 1.8e-41 173.3 144 60.4
Cfa009314 Carpinus fangiana HOM05D006725 ORTHO05D008223 1.8e-41 173.3 164 57.9
CsaV3_2G025320 Cucumis sativus L. HOM05D006725 ORTHO05D008223 5.1e-41 171.8 167 52.1
PGR102G0799 Punica granatum HOM05D006725 ORTHO05D008223 6.7e-41 171.4 182 50.0
HanXRQChr17g0569291 Helianthus annuus HOM05D006725 ORTHO05D008223 1.5e-40 170.2 142 59.2
QL03p054759 Quercus lobata HOM05D006725 ORTHO05D008223 3.3e-40 169.1 125 61.6
FAN12G1259 Fragaria x ananassa HOM05D006725 ORTHO05D008223 4.3e-40 168.7 136 59.6
Lj3g0011418 Lotus japonicus HOM05D006725 ORTHO05D008223 4.3e-40 168.7 143 55.2
EL10Ac6g13437 Beta vulgaris HOM05D006725 ORTHO05D008223 5.6e-40 168.3 142 57.0
Glyma.11G248100 Glycine max HOM05D006725 ORTHO05D008223 5.6e-40 168.3 134 56.7
Sed0015494 Sechium edule HOM05D006725 ORTHO05D008223 5.6e-40 168.3 143 57.3
FAN22G0294 Fragaria x ananassa HOM05D006725 ORTHO05D008223 1.6e-39 166.8 136 58.8
Solyc05g014650.2 Solanum lycopersicum HOM05D006725 ORTHO05D008223 1.6e-39 166.8 173 49.7
Ciclev10032688m.g Citrus clementina HOM05D006725 ORTHO05D008223 2.1e-39 166.4 171 51.5
TPR.G22435 Trifolium pratense HOM05D006725 ORTHO05D008223 2.1e-39 166.4 144 56.9
Glyma.18G009100 Glycine max HOM05D006725 ORTHO05D008223 2.8e-39 166.0 119 61.3
Medtr3g085720 Medicago truncatula HOM05D006725 ORTHO05D008223 2.8e-39 166.0 144 56.9
Peaxi162Scf00128g00835 Petunia axillaris HOM05D006725 ORTHO05D008223 4.8e-39 165.2 149 55.0
arahy.Tifrunner.gnm1.ann1.ZVR9LL Arachis hypogaea HOM05D006725 ORTHO05D008223 8.1e-39 164.5 136 58.1
Sopen05g009780 Solanum pennellii HOM05D006725 ORTHO05D008223 8.1e-39 164.5 156 53.2
Rhsim12G0035000 Rhododendron simsii HOM05D006725 ORTHO05D008223 1.1e-38 164.1 157 51.6
arahy.Tifrunner.gnm1.ann1.245RAI Arachis hypogaea HOM05D006725 ORTHO05D008223 1.8e-38 163.3 150 54.7
Lj3A1064T102 Lonicera japonica HOM05D006725 ORTHO05D008223 3.1e-38 162.5 115 64.3
Hund06064 Selenicereus undatus HOM05D006725 ORTHO05D008223 2.0e-37 159.8 123 58.5
Psat5g094640 Pisum sativum HOM05D006725 ORTHO05D008223 2.6e-37 159.5 127 61.4
Migut.K00702 Erythranthe guttata HOM05D006725 ORTHO05D008223 4.9e-36 155.2 152 50.0
Lalb_Chr11g0075681 Lupinus albus HOM05D006725 ORTHO05D008223 4.9e-36 155.2 124 57.3
Zm00001eb133570 Zea mays HOM05D006725 ORTHO05D008223 6.5e-36 154.8 144 54.2
SGA_v2.0_scaffold46G17392 Striga asiatica HOM05D006725 ORTHO05D008223 8.4e-36 154.5 145 53.1
unitig_749.g13304 Utricularia gibba HOM05D006725 ORTHO05D008223 1.1e-35 154.1 143 53.8
AUR62005570 Chenopodium quinoa HOM05D006725 ORTHO05D008223 1.4e-35 153.7 155 50.3
Os12g0241100 Oryza sativa ssp. japonica HOM05D006725 ORTHO05D008223 2.5e-35 152.9 147 52.4
SalBow2G1482 Salvia bowleyana HOM05D006725 ORTHO05D008223 4.2e-35 152.1 158 50.6
Sabra08G0079700 Salix brachista HOM05D006725 ORTHO05D008223 9.3e-35 151.0 171 49.7
AT1G67620 Arabidopsis thaliana HOM05D006725 ORTHO05D008223 1.2e-34 150.6 178 44.9
DCAR_007015 Daucus carota HOM05D006725 ORTHO05D008223 4.6e-34 148.7 118 53.4
AL2G26280 Arabidopsis lyrata HOM05D006725 ORTHO05D008223 3.0e-33 146.0 178 44.4
Aa31LG4G12010 Aethionema arabicum HOM05D006725 ORTHO05D008223 5.1e-33 145.2 182 44.0
BolC6t39176H Brassica oleracea HOM05D006725 ORTHO05D008223 1.5e-32 143.7 164 45.7
Carub.0002s1395 Capsella rubella HOM05D006725 ORTHO05D008223 2.5e-32 142.9 173 46.8
BcaC08g46171 Brassica carinata HOM05D006725 ORTHO05D008223 4.3e-32 142.1 164 45.1
BraA07t31044Z Brassica rapa HOM05D006725 ORTHO05D008223 5.7e-32 141.7 159 45.3
Thhalv10019173m.g Eutrema salsugineum HOM05D006725 ORTHO05D008223 9.6e-32 141.0 167 46.1
BraA07t31040Z Brassica rapa HOM05D006725 ORTHO05D008223 1.3e-31 140.6 167 44.9
CARHR060190 Cardamine hirsuta HOM05D006725 ORTHO05D008223 1.3e-31 140.6 140 50.0
Eucgr.B03461 Eucalyptus grandis HOM05D006725 ORTHO05D008223 1.3e-31 140.6 164 45.7
C06p42630 Brassica napus HOM05D006725 ORTHO05D008223 1.6e-31 140.2 140 48.6
A07p34140 Brassica napus HOM05D006725 ORTHO05D008223 2.1e-31 139.8 168 44.0
GSVIVG01010346001 Vitis vinifera HOM05D006725 ORTHO05D008223 2.8e-31 139.4 90 73.3
Sc04g0004650 Simmondsia chinensis HOM05D006725 ORTHO05D008223 6.3e-31 138.3 113 58.4
BcaB03g15182 Brassica carinata HOM05D006725 ORTHO05D008223 3.1e-30 136.0 139 48.2
CDE09G0294 Ceratophyllum demersum HOM05D006725 ORTHO05D008223 4.1e-30 135.6 90 71.1
Nitab4.5_0000581g0080 Nicotiana tabacum HOM05D006725 ORTHO05D008223 1.2e-29 134.0 153 45.8
MELO3C010728.2 Cucumis melo HOM05D006725 ORTHO05D008223 1.1e-27 127.5 129 51.2
MBI08_g41741_MAGBIO Magnolia biondii HOM05D006725 ORTHO05D008223 3.1e-22 109.4 60 83.3
AUR62024160 Chenopodium quinoa HOM05D006725 ORTHO05D008223 5.9e-21 105.1 117 47.0
arahy.Tifrunner.gnm1.ann1.GPZA99 Arachis hypogaea HOM05D006725 ORTHO05D008223 1.0e-20 104.4 123 45.5
SMO141G0262 Selaginella moellendorffii HOM05D006725 ORTHO05D008223 6.5e-20 101.7 105 41.0
Pp3c8_14070 Physcomitrium patens HOM05D006725 ORTHO05D008223 8.5e-20 101.3 106 41.5
RcHm_v2.0_Chr7g0198741 Rosa chinensis HOM05D006725 ORTHO05D008223 2.5e-19 99.8 76 56.6
Cc11_g16590 Coffea canephora HOM05D006725 ORTHO05D008223 4.2e-19 99.0 93 52.7
ECA234G0356 Erigeron canadensis HOM05D006725 ORTHO05D008223 5.5e-19 98.6 69 65.2
RcHm_v2.0_Chr1g0343341 Rosa chinensis HOM05D006725 ORTHO05D008223 7.2e-19 98.2 72 63.9
CDE02G2623 Ceratophyllum demersum HOM05D006725 ORTHO05D008223 2.1e-18 96.7 99 55.6
SalBow1G8122 Salvia bowleyana HOM05D004872 ORTHO05D006050 2.3e-17 93.2 67 62.7
SalBow3G4645 Salvia bowleyana HOM05D006725 ORTHO05D008223 2.3e-17 93.2 67 62.7
CBR_g17596 Chara braunii HOM05D006725 ORTHO05D008223 3.0e-17 92.8 106 39.6
Nitab4.5_0000240g0060 Nicotiana tabacum HOM05D006725 ORTHO05D008223 3.9e-17 92.4 71 59.2
CAN.G1081.12 Capsicum annuum HOM05D006725 ORTHO05D008223 5.1e-17 92.0 75 54.7
CAN.G3094.1 Capsicum annuum HOM05D006725 ORTHO05D008223 5.1e-17 92.0 75 54.7
Actinidia30676 Actinidia chinensis HOM05D006725 ORTHO05D008223 1.1e-16 90.9 106 45.3
VMungo1383G0611 Vigna mungo HOM05D006725 ORTHO05D008223 8.2e-15 84.7 124 37.1
FvH4_4g24330 Fragaria vesca HOM05D006725 ORTHO05D008223 3.1e-14 82.8 67 56.7
MCO03G004 Micromonas commoda HOM05D006725 ORTHO05D008223 6.9e-14 81.6 135 32.6
Atru.chr7.1050 Acer truncatum HOM05D006725 ORTHO05D008223 1.2e-13 80.9 56 69.6
Hma1.2p1_0167F.1_g073800 Hydrangea macrophylla HOM05D006725 ORTHO05D008223 1.3e-12 77.4 51 62.7
CAN.G1081.11 Capsicum annuum HOM05D006725 ORTHO05D008223 3.8e-12 75.9 81 50.6
CAN.G3094.2 Capsicum annuum HOM05D006725 ORTHO05D008223 3.8e-12 75.9 81 50.6
Oeu041686.1 Olea europaea HOM05D006725 ORTHO05D008223 2.5e-11 73.2 88 44.3
Cpa.g.sc351.2 Carica papaya HOM05D006725 ORTHO05D008223 3.2e-11 72.8 183 31.7
MBI08_g41742_MAGBIO Magnolia biondii HOM05D006725 ORTHO05D008223 2.1e-10 70.1 87 44.8
RcHm_v2.0_Chr1g0366581 Rosa chinensis HOM05D006725 ORTHO05D008223 4.7e-10 68.9 52 61.5
RcHm_v2.0_Chr7g0183971 Rosa chinensis HOM05D006725 ORTHO05D008223 4.7e-10 68.9 52 61.5
RcHm_v2.0_Chr3g0456071 Rosa chinensis HOM05D006725 ORTHO05D008223 7.9e-10 68.2 51 60.8
DCAR_016822 Daucus carota HOM05D006308 ORTHO05D007820 3.1e-06 56.2 111 33.3
AT3G12930 Arabidopsis thaliana HOM05D006308 ORTHO05D007820 7.0e-06 55.1 132 28.0
Gohir.A04G049000 Gossypium hirsutum HOM05D006308 ORTHO05D007820 7.0e-06 55.1 101 32.7
Gorai.009G355200 Gossypium raimondii HOM05D006308 ORTHO05D007820 9.1e-06 54.7 101 32.7


User provided reference genes

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