Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0609G116 Amborella trichopoda HOM05D002474 ORTHO05D006727 1.5e-259 899.0 461 100.0
CSS0021046 Camellia sinensis var. sinensis HOM05D002474 ORTHO05D006727 1.5e-174 616.7 455 69.0
Nn4g23008 Nelumbo nucifera HOM05D002474 ORTHO05D006727 1.2e-173 613.6 454 66.7
GSVIVG01032597001 Vitis vinifera HOM05D002474 ORTHO05D006727 5.7e-171 604.7 420 68.8
Thecc.09G254500 Theobroma cacao HOM05D002474 ORTHO05D006727 3.7e-170 602.1 410 70.0
PSO478G4089 Papaver somniferum HOM05D002474 ORTHO05D006727 1.1e-169 600.5 420 68.6
Hma1.2p1_0449F.1_g154950 Hydrangea macrophylla HOM05D002474 ORTHO05D006727 3.1e-169 599.0 419 68.5
Atru.chr8.2476 Acer truncatum HOM05D002474 ORTHO05D006727 7.0e-169 597.8 410 70.0
Gorai.013G255100 Gossypium raimondii HOM05D002474 ORTHO05D006727 1.2e-168 597.0 415 68.7
Aqoxy3G00804 Aquilegia oxysepala HOM05D002474 ORTHO05D006727 7.7e-168 594.3 410 69.8
QL02p080225 Quercus lobata HOM05D002474 ORTHO05D006727 1.7e-167 593.2 412 69.2
Ciclev10011620m.g Citrus clementina HOM05D002474 ORTHO05D006727 3.8e-167 592.0 412 69.9
Gohir.A13G220300 Gossypium hirsutum HOM05D002474 ORTHO05D006727 3.8e-167 592.0 415 68.2
Eucgr.J02138 Eucalyptus grandis HOM05D002474 ORTHO05D006727 5.5e-166 588.2 412 68.0
PSO161G0033 Papaver somniferum HOM05D002474 ORTHO05D006727 7.2e-166 587.8 420 67.6
ECA246G0556 Erigeron canadensis HOM05D002474 ORTHO05D006727 9.4e-166 587.4 410 68.5
HanXRQChr17g0547501 Helianthus annuus HOM05D002474 ORTHO05D006727 3.6e-165 585.5 415 68.4
Solyc02g067480.3 Solanum lycopersicum HOM05D002474 ORTHO05D006727 1.0e-164 583.9 443 64.3
Sopen02g016630 Solanum pennellii HOM05D002474 ORTHO05D006727 1.8e-164 583.2 443 64.3
PGSC0003DMG400006940 Solanum tuberosum HOM05D002474 ORTHO05D006727 1.5e-163 580.1 443 64.1
CAN.G1128.5 Capsicum annuum HOM05D002474 ORTHO05D006727 3.4e-163 578.9 439 64.2
TAR629G1594 Trochodendron aralioides HOM05D002474 ORTHO05D006727 5.7e-163 578.2 422 67.8
CsaV3_5G037800 Cucumis sativus L. HOM05D002474 ORTHO05D006727 7.5e-163 577.8 421 66.5
MELO3C021965.2 Cucumis melo HOM05D002474 ORTHO05D006727 2.2e-162 576.2 421 66.3
Nitab4.5_0006062g0010 Nicotiana tabacum HOM05D002474 ORTHO05D006727 2.2e-162 576.2 437 64.5
Phvul.004G025500 Phaseolus vulgaris HOM05D002474 ORTHO05D006727 2.2e-162 576.2 416 65.9
Nitab4.5_0002699g0040 Nicotiana tabacum HOM05D002474 ORTHO05D006727 9.2e-161 570.9 430 64.4
Migut.K01338 Erythranthe guttata HOM05D002474 ORTHO05D006727 1.2e-160 570.5 419 65.2
Oeu033341.3 Olea europaea HOM05D002474 ORTHO05D006727 2.0e-160 569.7 449 63.3
Gohir.D13G224300 Gossypium hirsutum HOM05D002474 ORTHO05D006727 4.5e-160 568.5 424 65.8
Medtr6g011270 Medicago truncatula HOM05D002474 ORTHO05D006727 2.3e-159 566.2 416 63.9
FvH4_6g49390 Fragaria vesca HOM05D002474 ORTHO05D006727 2.9e-159 565.8 409 65.5
Lsat_1_v5_gn_3_102300 Lactuca sativa HOM05D002474 ORTHO05D006727 2.9e-159 565.8 410 67.6
BraA04t16928Z Brassica rapa HOM05D002474 ORTHO05D006727 3.8e-159 565.5 410 66.1
Potri.004G130000 Populus trichocarpa HOM05D002474 ORTHO05D006727 8.6e-159 564.3 410 66.8
RcHm_v2.0_Chr2g0169251 Rosa chinensis HOM05D002474 ORTHO05D006727 1.5e-158 563.5 455 60.4
Duzib168G1861 Durio zibethinus HOM05D002474 ORTHO05D006727 1.9e-158 563.1 381 69.3
arahy.Tifrunner.gnm1.ann1.B2F8E8 Arachis hypogaea HOM05D002474 ORTHO05D006727 2.5e-158 562.8 429 63.4
Sc11g0006920 Simmondsia chinensis HOM05D002474 ORTHO05D006727 2.5e-158 562.8 410 66.8
unitig_748.g8621 Utricularia gibba HOM05D002474 ORTHO05D006727 4.3e-158 562.0 410 66.1
TPR.G4252 Trifolium pratense HOM05D002474 ORTHO05D006727 5.6e-158 561.6 416 63.9
Lalb_Chr06g0175531 Lupinus albus HOM05D002474 ORTHO05D006727 7.3e-158 561.2 412 64.1
COL.COLO4_24935 Corchorus olitorius HOM05D002474 ORTHO05D006727 9.5e-158 560.8 409 67.2
CDE08G1502 Ceratophyllum demersum HOM05D002474 ORTHO05D006727 1.2e-157 560.5 423 63.4
Carub.0007s3579 Capsella rubella HOM05D002474 ORTHO05D006727 1.6e-157 560.1 410 65.6
THA.LOC104805441 Tarenaya hassleriana HOM05D002474 ORTHO05D006727 1.6e-157 560.1 416 65.4
Ca_04259_v3 Cicer arietinum L. HOM05D002474 ORTHO05D006727 3.6e-157 558.9 416 63.2
Psat1g077640 Pisum sativum HOM05D002474 ORTHO05D006727 4.7e-157 558.5 412 64.3
RhsimUnG0054500 Rhododendron simsii HOM05D002474 ORTHO05D006727 6.1e-157 558.1 474 59.7
AL7G50200 Arabidopsis lyrata HOM05D002474 ORTHO05D006727 6.8e-156 554.7 409 65.3
Lj2g0026556 Lotus japonicus HOM05D002474 ORTHO05D006727 2.0e-155 553.1 415 64.1
Os12g0638800 Oryza sativa ssp. japonica HOM05D002474 ORTHO05D006727 2.6e-155 552.7 410 64.4
CARHR262240 Cardamine hirsuta HOM05D002474 ORTHO05D006727 5.7e-155 551.6 410 64.9
AT5G39940 Arabidopsis thaliana HOM05D002474 ORTHO05D006727 9.2e-153 544.3 419 63.2
Nitab4.5_0023901g0010 Nicotiana tabacum HOM05D002474 ORTHO05D006727 2.7e-152 542.7 394 66.5
PGR083G0251 Punica granatum HOM05D002474 ORTHO05D006727 2.7e-152 542.7 418 63.6
Cfa007503 Carpinus fangiana HOM05D002474 ORTHO05D006727 1.3e-151 540.4 491 57.8
Aa31LG9G1670 Aethionema arabicum HOM05D002474 ORTHO05D006727 3.0e-151 539.3 420 63.8
Zm00001eb033100 Zea mays HOM05D002474 ORTHO05D006727 1.9e-150 536.6 453 58.3
TWI60G0106 Tripterygium wilfordii HOM05D002474 ORTHO05D006727 1.6e-149 533.5 427 62.5
Thhalv10028129m.g Eutrema salsugineum HOM05D002474 ORTHO05D006727 1.0e-148 530.8 410 63.4
SGA_v2.0_scaffold224G42953 Striga asiatica HOM05D002474 ORTHO05D006727 1.4e-148 530.4 427 62.5
CiPaw.04G020500 Carya illinoinensis HOM05D002474 ORTHO05D006727 5.2e-148 528.5 410 64.1
Ah.12g065360 Amaranthus hybridus HOM05D002474 ORTHO05D006727 6.8e-148 528.1 410 63.2
BcaB06g27397 Brassica carinata HOM05D002474 ORTHO05D006727 6.8e-148 528.1 401 64.1
Haze_14590 Corylus avellana HOM05D002474 ORTHO05D006727 1.7e-146 523.5 463 59.0
Hund13252 Selenicereus undatus HOM05D002474 ORTHO05D006727 8.3e-146 521.2 476 56.9
arahy.Tifrunner.gnm1.ann1.DRNA5E Arachis hypogaea HOM05D002474 ORTHO05D006727 1.6e-144 516.9 429 59.2
FAN02G0112 Fragaria x ananassa HOM05D002474 ORTHO05D006727 1.6e-144 516.9 409 61.9
Rhsim10G0032000 Rhododendron simsii HOM05D002474 ORTHO05D006727 4.6e-144 515.4 454 60.6
Dinv33713 Davidia involucrata HOM05D002474 ORTHO05D006727 1.0e-143 514.2 351 70.1
EL10Ac2g02929 Beta vulgaris HOM05D002474 ORTHO05D006727 6.6e-143 511.5 410 62.9
VMungo0464G0136 Vigna mungo HOM05D002474 ORTHO05D006727 4.3e-142 508.8 475 55.2
Cpa.g.sc14.49 Carica papaya HOM05D002474 ORTHO05D006727 5.6e-142 508.4 435 59.3
Sabra04G0087600 Salix brachista HOM05D002474 ORTHO05D006727 1.6e-141 506.9 455 57.8
CSS0037906 Camellia sinensis var. sinensis HOM05D002474 ORTHO05D006727 3.6e-141 505.8 351 68.9
Glyma.19G019000 Glycine max HOM05D002474 ORTHO05D006727 3.6e-141 505.8 419 58.7
Peaxi162Scf00059g00319 Petunia axillaris HOM05D002474 ORTHO05D006727 1.4e-140 503.8 394 63.5
FAN14G2185 Fragaria x ananassa HOM05D002474 ORTHO05D006727 2.0e-139 500.0 487 53.4
CANSAT64G2711 Cannabis sativa HOM05D002474 ORTHO05D006727 2.2e-138 496.5 445 58.4
AUR62031654 Chenopodium quinoa HOM05D002474 ORTHO05D006727 2.9e-138 496.1 420 58.8
FAN05G2709 Fragaria x ananassa HOM05D002474 ORTHO05D006727 3.2e-137 492.7 402 60.9
Pp3c23_2270 Physcomitrium patens HOM05D002474 ORTHO05D006727 5.6e-134 481.9 407 58.5
Sed0010242 Sechium edule HOM05D002474 ORTHO05D006727 5.6e-134 481.9 362 65.5
C04p46420 Brassica napus HOM05D002474 ORTHO05D006727 7.3e-134 481.5 370 62.4
A04p12710 Brassica napus HOM05D002474 ORTHO05D006727 1.6e-133 480.3 370 62.2
ClCG09G018440 Citrullus lanatus HOM05D002474 ORTHO05D006727 4.7e-133 478.8 553 47.7
AagrBONN_evm.TU.Sc2ySwM_369.199 Anthoceros agrestis HOM05D002474 ORTHO05D006727 5.2e-132 475.3 421 55.1
DCAR_011168 Daucus carota HOM05D002474 ORTHO05D006727 5.8e-131 471.9 374 62.6
FAN09G4837 Fragaria x ananassa HOM05D002474 ORTHO05D006727 1.9e-129 466.8 486 51.2
Mapoly0035s0063 Marchantia polymorpha HOM05D002474 ORTHO05D006727 5.4e-129 465.3 411 55.5
HanXRQChr16g0519921 Helianthus annuus HOM05D002474 ORTHO05D006727 7.1e-121 438.3 324 65.7
vmacro05750 Vaccinium macrocarpon HOM05D002474 ORTHO05D006727 2.5e-118 429.9 427 53.2
SalBow1G0883 Salvia bowleyana HOM05D002474 ORTHO05D006727 4.5e-115 419.1 406 55.4
SMO137G0254 Selaginella moellendorffii HOM05D002474 ORTHO05D006727 1.3e-111 407.5 454 46.9
AUR62018296 Chenopodium quinoa HOM05D002474 ORTHO05D006727 1.1e-110 404.4 410 52.9
Prupe.3G272800 Prunus persica HOM05D002474 ORTHO05D006727 7.6e-107 391.7 311 62.4
HPP92_014139 Vanilla planifolia HOM05D002474 ORTHO05D006727 6.9e-100 368.6 410 46.3
Hma1.2p1_0449F.1_g154940 Hydrangea macrophylla HOM05D002474 ORTHO05D006727 2.6e-99 366.7 311 59.8
Manes.S095220 Manihot esculenta HOM05D002474 ORTHO05D006727 4.1e-92 342.8 246 69.1
Cc07_g02920 Coffea canephora HOM05D002474 ORTHO05D006727 3.2e-89 333.2 260 63.8
QL02p080117 Quercus lobata HOM05D002474 ORTHO05D006727 3.0e-79 300.1 207 69.1
CBR_g50657 Chara braunii HOM05D002474 ORTHO05D006727 1.2e-75 288.1 299 48.2
QL02p080121 Quercus lobata HOM05D002474 ORTHO05D006727 4.4e-70 269.6 185 68.1
Rhsim10G0031600 Rhododendron simsii HOM05D002474 ORTHO05D006727 1.6e-67 261.2 229 58.5
Cc07_g02930 Coffea canephora HOM05D002474 ORTHO05D006727 1.1e-65 255.0 188 64.4
Lj7A402G46 Lonicera japonica HOM05D002474 ORTHO05D006727 7.2e-65 252.3 285 50.5
Hund13251 Selenicereus undatus HOM05D002474 ORTHO05D006727 1.2e-56 224.9 167 65.9
BolC4t26228H Brassica oleracea HOM05D002474 ORTHO05D006727 5.7e-54 216.1 157 66.2
Lsat_1_v5_gn_6_77521 Lactuca sativa HOM05D002474 ORTHO05D006727 1.2e-48 198.4 271 43.2
SEGI_13584 Sequoiadendron giganteum HOM05D002474 ORTHO05D006727 1.2e-38 165.2 150 54.0
SpUN0485_0010 Schrenkiella parvula HOM05D002474 ORTHO05D006727 1.5e-38 164.9 97 76.3
CBR_g59258 Chara braunii HOM05D002474 ORTHO05D006727 2.2e-37 161.0 115 66.1
HanXRQChr09g0265421 Helianthus annuus HOM05D002474 ORTHO05D006727 3.7e-37 160.2 119 63.9
Lj7A402G47 Lonicera japonica HOM05D002474 ORTHO05D006727 2.5e-33 147.5 124 69.4
SEGI_37465 Sequoiadendron giganteum HOM05D002474 ORTHO05D006727 1.2e-32 145.2 91 69.2
Sp7g01810 Schrenkiella parvula HOM05D002474 ORTHO05D006727 4.0e-31 140.2 134 54.5
C09p60950 Brassica napus HOM05D002474 ORTHO05D006727 6.8e-31 139.4 109 60.6
Lsat_1_v5_gn_2_107941 Lactuca sativa HOM05D002474 ORTHO05D005260 2.2e-29 134.4 223 37.2
MCO07G529 Micromonas commoda HOM05D002474 ORTHO05D006727 1.3e-26 125.2 439 28.9
BolC9t56457H Brassica oleracea HOM05D002474 ORTHO05D006727 1.7e-26 124.8 103 58.3
Actinidia35021 Actinidia chinensis HOM05D002474 ORTHO05D006727 3.3e-25 120.6 276 34.1
MBI04_g20672_MAGBIO Magnolia biondii HOM05D002474 ORTHO05D006727 8.1e-24 115.9 223 35.9
C09p36190 Brassica napus HOM05D002474 ORTHO05D006727 2.3e-23 114.4 96 57.3
BcaC04g18910 Brassica carinata HOM05D002474 ORTHO05D006727 1.7e-18 98.2 112 48.2
MBI04_g20673_MAGBIO Magnolia biondii HOM05D002474 ORTHO05D006727 1.5e-17 95.1 131 39.7
Cre09.g389400 Chlamydomonas reinhardtii HOM05D002474 ORTHO05D006727 1.2e-16 92.0 275 28.0
FAN10G3970 Fragaria x ananassa HOM05D002474 ORTHO05D006727 1.8e-15 88.2 43 93.0
Rhsim10G0031800 Rhododendron simsii HOM05D002474 ORTHO05D006727 1.3e-13 82.0 53 64.2
FAN10G3068 Fragaria x ananassa HOM05D002474 ORTHO05D006727 8.4e-13 79.3 38 92.1
PRCOL_00006911 Prasinoderma coloniale HOM05D002474 ORTHO05D006727 3.2e-12 77.4 300 26.7
Glyma.13G065601 Glycine max HOM05D002474 ORTHO05D006727 8.1e-08 62.8 51 58.8
vmacro05749 Vaccinium macrocarpon HOM05D002474 ORTHO05D006727 3.1e-07 60.8 32 81.2
vmacro03926 Vaccinium macrocarpon HOM05D002474 ORTHO05D006727 1.2e-06 58.9 30 83.3


User provided reference genes

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