Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0605G371 Amborella trichopoda HOM05D006755 ORTHO05D008472 1.1e-110 404.1 343 100.0
Carub.0007s0004 Capsella rubella HOM05D006755 ORTHO05D008472 1.2e-24 118.2 125 57.6
AL7G10050 Arabidopsis lyrata HOM05D006755 ORTHO05D008472 2.1e-24 117.5 125 56.0
AT4G38150 Arabidopsis thaliana HOM05D006755 ORTHO05D008472 4.6e-24 116.3 129 55.8
Sopen12g032020 Solanum pennellii HOM05D006755 ORTHO05D008472 1.3e-23 114.8 111 56.8
Duzib052G1107 Durio zibethinus HOM05D006755 ORTHO05D008472 3.9e-23 113.2 122 53.3
MD05G1145100 Malus domestica HOM05D006755 ORTHO05D008472 3.9e-23 113.2 128 52.3
Solyc12g096140.3 Solanum lycopersicum HOM05D006755 ORTHO05D008472 3.9e-23 113.2 108 57.4
PGR142G2394 Punica granatum HOM05D006755 ORTHO05D008472 5.1e-23 112.8 144 49.3
Thecc.02G149300 Theobroma cacao HOM05D006755 ORTHO05D008472 5.1e-23 112.8 117 55.6
Thhalv10005467m.g Eutrema salsugineum HOM05D006755 ORTHO05D008472 6.6e-23 112.5 124 53.2
Prupe.8G183200 Prunus persica HOM05D006755 ORTHO05D008472 8.7e-23 112.1 128 53.1
CANSAT25G1067 Cannabis sativa HOM05D006755 ORTHO05D008472 1.5e-22 111.3 181 43.6
Lj9P409T68 Lonicera japonica HOM05D006755 ORTHO05D008472 1.5e-22 111.3 131 54.2
Sp7g37600 Schrenkiella parvula HOM05D006755 ORTHO05D008472 1.5e-22 111.3 127 53.5
Nitab4.5_0009982g0010 Nicotiana tabacum HOM05D006755 ORTHO05D008472 1.9e-22 110.9 111 56.8
CSS0044736 Camellia sinensis var. sinensis HOM05D006755 ORTHO05D008472 2.5e-22 110.5 79 73.4
PGSC0003DMG400029290 Solanum tuberosum HOM05D006755 ORTHO05D008472 2.5e-22 110.5 111 55.9
CANSAT25G1651 Cannabis sativa HOM05D006755 ORTHO05D008472 3.3e-22 110.2 179 42.5
CARHR293910 Cardamine hirsuta HOM05D006755 ORTHO05D008472 3.3e-22 110.2 119 54.6
Glyma.11G065700 Glycine max HOM05D006755 ORTHO05D008472 3.3e-22 110.2 107 58.9
Nitab4.5_0000943g0100 Nicotiana tabacum HOM05D006755 ORTHO05D008472 3.3e-22 110.2 111 55.9
Aqoxy4G02640 Aquilegia oxysepala HOM05D006755 ORTHO05D008472 4.3e-22 109.8 115 54.8
BcaC06g34295 Brassica carinata HOM05D006755 ORTHO05D008472 4.3e-22 109.8 118 55.1
Cc08_g09000 Coffea canephora HOM05D006755 ORTHO05D008472 4.3e-22 109.8 149 47.7
Migut.E01827 Erythranthe guttata HOM05D006755 ORTHO05D008472 5.6e-22 109.4 106 55.7
Peaxi162Scf00876g00046 Petunia axillaris HOM05D006755 ORTHO05D008472 5.6e-22 109.4 109 54.1
VMungo1215G0649 Vigna mungo HOM05D006755 ORTHO05D008472 5.6e-22 109.4 111 59.5
BolC7t43606H Brassica oleracea HOM05D006755 ORTHO05D008472 7.3e-22 109.0 118 55.1
Eucgr.I01549 Eucalyptus grandis HOM05D006755 ORTHO05D008472 7.3e-22 109.0 141 50.4
Gohir.D13G058100 Gossypium hirsutum HOM05D006755 ORTHO05D008472 7.3e-22 109.0 122 50.8
Gorai.013G065500 Gossypium raimondii HOM05D006755 ORTHO05D008472 7.3e-22 109.0 122 50.8
Manes.15G113000 Manihot esculenta HOM05D006755 ORTHO05D008472 9.6e-22 108.6 124 49.2
BraA06t27405Z Brassica rapa HOM05D006755 ORTHO05D008472 1.3e-21 108.2 116 53.4
CiPaw.06G113100 Carya illinoinensis HOM05D006755 ORTHO05D008472 1.3e-21 108.2 134 50.0
Nitab4.5_0001968g0030 Nicotiana tabacum HOM05D006755 ORTHO05D008472 1.3e-21 108.2 75 73.3
EL10Ac9g21570 Beta vulgaris HOM05D006755 ORTHO05D008472 1.6e-21 107.8 117 53.0
BcaC06g31423 Brassica carinata HOM05D006755 ORTHO05D008472 1.6e-21 107.8 126 52.4
Nn3g19301 Nelumbo nucifera HOM05D006755 ORTHO05D008472 1.6e-21 107.8 118 55.9
Nn6g31560 Nelumbo nucifera HOM05D006755 ORTHO05D008472 1.6e-21 107.8 121 52.9
PSO541G3341 Papaver somniferum HOM05D006755 ORTHO05D008472 1.6e-21 107.8 61 85.2
CDE02G4616 Ceratophyllum demersum HOM05D006755 ORTHO05D008472 2.1e-21 107.5 56 91.1
CDE04G3036 Ceratophyllum demersum HOM05D006755 ORTHO05D008472 2.1e-21 107.5 56 91.1
Lj2g0006557 Lotus japonicus HOM05D006755 ORTHO05D008472 2.1e-21 107.5 57 89.5
Lalb_Chr09g0322551 Lupinus albus HOM05D006755 ORTHO05D008472 2.1e-21 107.5 105 59.0
QL11p057006 Quercus lobata HOM05D006755 ORTHO05D008472 2.1e-21 107.5 137 48.2
Ca_00389_v3 Cicer arietinum L. HOM05D006755 ORTHO05D008472 2.8e-21 107.1 99 60.6
Medtr8g098445 Medicago truncatula HOM05D006755 ORTHO05D008472 2.8e-21 107.1 65 81.5
Oeu033356.1 Olea europaea HOM05D006755 ORTHO05D008472 2.8e-21 107.1 142 47.9
Actinidia20592 Actinidia chinensis HOM05D006755 ORTHO05D008472 3.6e-21 106.7 60 85.0
Actinidia26119 Actinidia chinensis HOM05D006755 ORTHO05D008472 3.6e-21 106.7 60 85.0
MSTRG.1737 Avicennia marina HOM05D006755 ORTHO05D008472 3.6e-21 106.7 201 38.3
Cfa005407 Carpinus fangiana HOM05D006755 ORTHO05D008472 3.6e-21 106.7 57 87.7
Haze_01948 Corylus avellana HOM05D006755 ORTHO05D008472 3.6e-21 106.7 57 87.7
Dinv41852 Davidia involucrata HOM05D006755 ORTHO05D008472 3.6e-21 106.7 86 66.3
Phvul.002G027800 Phaseolus vulgaris HOM05D006755 ORTHO05D008472 3.6e-21 106.7 109 57.8
TPR.G18806 Trifolium pratense HOM05D006755 ORTHO05D008472 3.6e-21 106.7 105 59.0
TAR376G0479 Trochodendron aralioides HOM05D006755 ORTHO05D008472 3.6e-21 106.7 115 54.8
HPP92_025325 Vanilla planifolia HOM05D006755 ORTHO05D008472 3.6e-21 106.7 103 55.3
arahy.Tifrunner.gnm1.ann1.0IBU2N Arachis hypogaea HOM05D006755 ORTHO05D008472 4.8e-21 106.3 108 55.6
arahy.Tifrunner.gnm1.ann1.HWJ5MG Arachis hypogaea HOM05D006755 ORTHO05D008472 4.8e-21 106.3 108 55.6
Lj2g0026453 Lotus japonicus HOM05D006755 ORTHO05D008472 4.8e-21 106.3 118 57.6
PSO675G0405 Papaver somniferum HOM05D006755 ORTHO05D008472 4.8e-21 106.3 62 83.9
SGA_v2.0_scaffold21G09644 Striga asiatica HOM05D006755 ORTHO05D008472 4.8e-21 106.3 121 52.1
C07p30650 Brassica napus HOM05D006755 ORTHO05D008472 6.2e-21 105.9 118 53.4
Hma1.2p1_0052F.1_g030470 Hydrangea macrophylla HOM05D006755 ORTHO05D008472 6.2e-21 105.9 129 49.6
THA.LOC104823440 Tarenaya hassleriana HOM05D006755 ORTHO05D008472 6.2e-21 105.9 119 52.9
Psat2g160920 Pisum sativum HOM05D006755 ORTHO05D008472 8.1e-21 105.5 105 57.1
Glyma.01G176900 Glycine max HOM05D006755 ORTHO05D008472 1.1e-20 105.1 101 60.4
Gohir.A13G063800 Gossypium hirsutum HOM05D006755 ORTHO05D008472 1.1e-20 105.1 122 51.6
SHI05798 Sapria himalayana HOM05D006755 ORTHO05D008472 1.1e-20 105.1 65 80.0
Ciclev10028759m.g Citrus clementina HOM05D006755 ORTHO05D008472 1.4e-20 104.8 55 89.1
Sc18g0006850 Simmondsia chinensis HOM05D006755 ORTHO05D008472 1.4e-20 104.8 72 72.2
HPP92_007220 Vanilla planifolia HOM05D006755 ORTHO05D008472 1.8e-20 104.4 57 84.2
COL.COLO4_04807 Corchorus olitorius HOM05D006755 ORTHO05D008472 2.4e-20 104.0 57 82.5
Nitab4.5_0002859g0100 Nicotiana tabacum HOM05D006755 ORTHO05D008472 2.4e-20 104.0 176 42.0
Aa31LG6G16930 Aethionema arabicum HOM05D006755 ORTHO05D008472 3.1e-20 103.6 140 49.3
vmacro08131 Vaccinium macrocarpon HOM05D006755 ORTHO05D008472 3.1e-20 103.6 56 87.5
Ah.01g010520 Amaranthus hybridus HOM05D006755 ORTHO05D008472 4.0e-20 103.2 117 49.6
CAN.G947.37 Capsicum annuum HOM05D006755 ORTHO05D008472 4.0e-20 103.2 75 69.3
A06p45360 Brassica napus HOM05D006755 ORTHO05D008472 5.3e-20 102.8 116 52.6
TWI75G0077 Tripterygium wilfordii HOM05D006755 ORTHO05D008472 5.3e-20 102.8 53 92.5
Aqoxy6G03058 Aquilegia oxysepala HOM05D006755 ORTHO05D008472 6.9e-20 102.4 57 84.2
HanXRQChr07g0186241 Helianthus annuus HOM05D006755 ORTHO05D008472 6.9e-20 102.4 120 47.5
Os01g0546500 Oryza sativa ssp. japonica HOM05D006755 ORTHO05D008472 6.9e-20 102.4 103 55.3
Rhsim12G0052500 Rhododendron simsii HOM05D006755 ORTHO05D008472 9.0e-20 102.1 56 85.7
CsaV3_7G002250 Cucumis sativus L. HOM05D006755 ORTHO05D008472 1.5e-19 101.3 101 54.5
Sed0010179 Sechium edule HOM05D006755 ORTHO05D008472 1.5e-19 101.3 100 54.0
Peaxi162Scf00193g00005 Petunia axillaris HOM05D006755 ORTHO05D008472 2.6e-19 100.5 188 39.9
Sabra04G0141300 Salix brachista HOM05D006755 ORTHO05D008472 2.6e-19 100.5 105 57.1
ECA233G3571 Erigeron canadensis HOM05D006755 ORTHO05D008472 4.4e-19 99.8 114 50.9
Hund00104 Selenicereus undatus HOM05D006755 ORTHO05D001720 4.4e-19 99.8 118 50.0
Zm00001eb342190 Zea mays HOM05D006755 ORTHO05D008472 4.4e-19 99.8 103 53.4
Lsat_1_v5_gn_6_28960 Lactuca sativa HOM05D006755 ORTHO05D008472 5.8e-19 99.4 57 78.9
DCAR_025005 Daucus carota HOM05D006755 ORTHO05D008472 7.6e-19 99.0 78 64.1
AUR62010217 Chenopodium quinoa HOM05D006755 ORTHO05D008472 1.3e-18 98.2 71 67.6
Medtr5g019860 Medicago truncatula HOM05D006755 ORTHO05D008472 1.7e-18 97.8 101 56.4
Nn1g06229 Nelumbo nucifera HOM05D006755 ORTHO05D008472 1.7e-18 97.8 98 60.2
MELO3C024165.2 Cucumis melo HOM05D006755 ORTHO05D008472 2.2e-18 97.4 68 72.1
Duzib132G0679 Durio zibethinus HOM05D006755 ORTHO05D008472 2.9e-18 97.1 67 73.1
AUR62013213 Chenopodium quinoa HOM05D006755 ORTHO05D008472 6.4e-18 95.9 65 69.2
Potri.004G209500 Populus trichocarpa HOM05D006755 ORTHO05D008472 6.4e-18 95.9 60 76.7
Ah.01g017780 Amaranthus hybridus HOM05D006755 ORTHO05D008472 5.1e-15 86.3 106 44.3
RcHm_v2.0_Chr6g0281671 Rosa chinensis HOM05D006755 ORTHO05D008472 5.1e-15 86.3 137 43.8
ClCG02G003160 Citrullus lanatus HOM05D006755 ORTHO05D008472 6.6e-15 85.9 125 42.4
Sed0025141 Sechium edule HOM05D006755 ORTHO05D008472 6.6e-15 85.9 56 67.9
Nn6g31556 Nelumbo nucifera HOM05D006755 ORTHO05D008472 3.6e-13 80.1 46 82.6
FvH4_2g17180 Fragaria vesca HOM05D006755 ORTHO05D008472 4.8e-13 79.7 132 40.2
FAN15G2937 Fragaria x ananassa HOM05D006755 ORTHO05D008472 6.2e-13 79.3 132 39.4
SalBow1G4250 Salvia bowleyana HOM05D006755 ORTHO05D008472 6.2e-13 79.3 56 67.9
FAN27G0618 Fragaria x ananassa HOM05D006755 ORTHO05D008472 1.4e-12 78.2 132 39.4
ATR0693G165 Amborella trichopoda HOM05D002804 ORTHO05D003755 1.5e-11 74.7 73 50.7
SEGI_20822 Sequoiadendron giganteum HOM05D006755 ORTHO05D008472 3.4e-11 73.6 83 48.2
Lj6P318T4 Lonicera japonica HOM05D006755 ORTHO05D008472 5.8e-11 72.8 36 94.4
TAR636G2693 Trochodendron aralioides HOM05D002804 ORTHO05D003755 5.8e-11 72.8 73 47.9
Nn5g27913 Nelumbo nucifera HOM05D002804 ORTHO05D003755 2.2e-10 70.9 73 46.6
MBI01_g31986_MAGBIO Magnolia biondii HOM05D006755 ORTHO05D008472 4.9e-10 69.7 106 40.6
Cpa.g.sc14.234 Carica papaya HOM05D002804 ORTHO05D003755 4.2e-09 66.6 73 45.2
GSVIVG01023844001 Vitis vinifera HOM05D006755 ORTHO05D008472 4.2e-09 66.6 57 56.1
PSO170G1624 Papaver somniferum HOM05D002804 ORTHO05D003755 7.1e-09 65.9 74 47.3
PSO357G0404 Papaver somniferum HOM05D002804 ORTHO05D003755 7.1e-09 65.9 74 47.3
PGSC0003DMG400018230 Solanum tuberosum HOM05D002804 ORTHO05D003755 1.2e-08 65.1 73 43.8
FAN05G1021 Fragaria x ananassa HOM05D002804 ORTHO05D003755 4.6e-08 63.2 73 42.5
Manes.04G038100 Manihot esculenta HOM05D002804 ORTHO05D003755 4.6e-08 63.2 98 36.7
MD05G1145400 Malus domestica HOM05D006755 ORTHO05D008472 7.9e-08 62.4 35 82.9
Eucgr.B01359 Eucalyptus grandis HOM05D002804 ORTHO05D003755 1.3e-07 61.6 73 41.1
Peaxi162Scf00194g00635 Petunia axillaris HOM05D002804 ORTHO05D003755 1.3e-07 61.6 92 38.0
Lsat_1_v5_gn_9_84161 Lactuca sativa HOM05D002804 ORTHO05D003755 1.8e-07 61.2 107 35.5
RcHm_v2.0_Chr3g0459231 Rosa chinensis HOM05D002804 ORTHO05D003755 2.3e-07 60.8 73 41.1
Os06g0308200 Oryza sativa ssp. japonica HOM05D002804 ORTHO05D003755 3.9e-07 60.1 83 37.3
Rhsim11G0111400 Rhododendron simsii HOM05D002962 ORTHO05D003280 3.9e-07 60.1 73 39.7
Oeu053880.1 Olea europaea HOM05D043847 ORTHO05D008472 5.1e-07 59.7 43 65.1
Peaxi162Scf00194g00625 Petunia axillaris HOM05D002804 ORTHO05D003755 6.7e-07 59.3 73 39.7
Sabra13G0000100 Salix brachista HOM05D002804 ORTHO05D003755 6.7e-07 59.3 61 45.9
Gohir.A09G116900 Gossypium hirsutum HOM05D002804 ORTHO05D003755 8.7e-07 58.9 73 38.4
Lj5g0005878 Lotus japonicus HOM05D002804 ORTHO05D003755 8.7e-07 58.9 74 40.5
TPR.G3051 Trifolium pratense HOM05D002804 ORTHO05D003755 8.7e-07 58.9 94 35.1
FvH4_6g08960 Fragaria vesca HOM05D002804 ORTHO05D003755 1.1e-06 58.5 73 39.7
FAN14G2492 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.1e-06 58.5 73 39.7
PGR119G1767 Punica granatum HOM05D002804 ORTHO05D003755 2.5e-06 57.4 73 39.7
VMungo0720G2485 Vigna mungo HOM05D002804 ORTHO05D003755 4.3e-06 56.6 74 37.8
Aqoxy1G02792 Aquilegia oxysepala HOM05D002804 ORTHO05D003755 9.6e-06 55.5 48 47.9
AL6G13060 Arabidopsis lyrata HOM05D002804 ORTHO05D003755 9.6e-06 55.5 100 34.0


User provided reference genes

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