Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0605G366 Amborella trichopoda HOM05D003703 ORTHO05D004278 3.2e-75 285.0 146 100.0
MBI01_g36100_MAGBIO Magnolia biondii HOM05D003703 ORTHO05D004278 1.4e-14 83.6 178 38.2
TAR633G0624 Trochodendron aralioides HOM05D004867 ORTHO05D005729 5.9e-13 78.2 180 33.9
Aqoxy2G00073 Aquilegia oxysepala HOM05D003703 ORTHO05D004278 6.5e-12 74.7 163 36.8
CiPaw.10G027200 Carya illinoinensis HOM05D003703 ORTHO05D004278 2.5e-11 72.8 156 35.3
PSO675G1999 Papaver somniferum HOM05D003703 ORTHO05D004278 3.2e-11 72.4 42 83.3
MSTRG.10837 Avicennia marina HOM05D003703 ORTHO05D004278 5.5e-11 71.6 181 34.3
HanXRQChr10g0300741 Helianthus annuus HOM05D003703 ORTHO05D004278 9.4e-11 70.9 150 36.0
Ciclev10012846m.g Citrus clementina HOM05D003703 ORTHO05D004278 2.1e-10 69.7 154 35.7
Manes.09G033600 Manihot esculenta HOM05D003703 ORTHO05D004278 3.6e-10 68.9 159 35.8
Duzib093G1286 Durio zibethinus HOM05D003703 ORTHO05D004278 6.1e-10 68.2 174 32.8
Thecc.05G169900 Theobroma cacao HOM05D003703 ORTHO05D004278 6.1e-10 68.2 150 36.0
ECA247G0725 Erigeron canadensis HOM05D003703 ORTHO05D004278 1.0e-09 67.4 153 35.3
TWI53G0257 Tripterygium wilfordii HOM05D003703 ORTHO05D004278 1.0e-09 67.4 151 36.4
Duzib106G1084 Durio zibethinus HOM05D003703 ORTHO05D004278 1.8e-09 66.6 174 35.1
Solyc03g063550.1 Solanum lycopersicum HOM05D003703 ORTHO05D004278 1.8e-09 66.6 144 32.6
ClCG10G017430 Citrullus lanatus HOM05D003703 ORTHO05D004278 3.0e-09 65.9 167 35.3
Lsat_1_v5_gn_9_26721 Lactuca sativa HOM05D003703 ORTHO05D004278 3.0e-09 65.9 157 35.0
Gohir.A09G127300 Gossypium hirsutum HOM05D003703 ORTHO05D004278 6.7e-09 64.7 190 32.6
Actinidia22024 Actinidia chinensis HOM05D003703 ORTHO05D004278 8.8e-09 64.3 163 34.4
Lsat_1_v5_gn_8_74300 Lactuca sativa HOM05D003703 ORTHO05D004278 8.8e-09 64.3 132 39.4
Gohir.D09G123500 Gossypium hirsutum HOM05D003703 ORTHO05D004278 1.5e-08 63.5 43 72.1
Gorai.006G142100 Gossypium raimondii HOM05D003703 ORTHO05D004278 1.5e-08 63.5 43 72.1
SalBow6G1024 Salvia bowleyana HOM05D003703 ORTHO05D004278 1.5e-08 63.5 162 35.8
SalBow6G3273 Salvia bowleyana HOM05D003703 ORTHO05D004278 1.5e-08 63.5 162 35.8
Gohir.D04G098100 Gossypium hirsutum HOM05D003703 ORTHO05D004278 2.6e-08 62.8 183 33.3
Nitab4.5_0000016g0390 Nicotiana tabacum HOM05D003703 ORTHO05D004278 2.6e-08 62.8 155 31.0
RcHm_v2.0_Chr3g0479981 Rosa chinensis HOM05D003703 ORTHO05D004278 2.6e-08 62.8 95 42.1
Peaxi162Scf00258g00023 Petunia axillaris HOM05D003703 ORTHO05D004278 3.3e-08 62.4 161 31.7
QL07p023397 Quercus lobata HOM05D003703 ORTHO05D004278 3.3e-08 62.4 156 33.3
PGSC0003DMG400009700 Solanum tuberosum HOM05D003703 ORTHO05D004278 3.3e-08 62.4 152 34.2
Manes.08G045500 Manihot esculenta HOM05D003703 ORTHO05D004278 4.4e-08 62.0 161 32.9
Rhsim03G0008400 Rhododendron simsii HOM05D003703 ORTHO05D004278 4.4e-08 62.0 141 33.3
Gorai.006G067100 Gossypium raimondii HOM05D003703 ORTHO05D004278 5.7e-08 61.6 183 32.8
Hma1.2p1_0183F.1_g080800 Hydrangea macrophylla HOM05D003703 ORTHO05D004278 5.7e-08 61.6 156 33.3
PSO339G4803 Papaver somniferum HOM05D003703 ORTHO05D004278 5.7e-08 61.6 37 75.7
MSTRG.19899 Avicennia marina HOM05D003703 ORTHO05D004278 7.5e-08 61.2 37 78.4
DCAR_019841 Daucus carota HOM05D003703 ORTHO05D004278 7.5e-08 61.2 81 42.0
Sabra06G0146400 Salix brachista HOM05D003703 ORTHO05D004278 7.5e-08 61.2 161 32.3
SGA_v2.0_scaffold94G28431 Striga asiatica HOM05D003703 ORTHO05D004278 7.5e-08 61.2 41 73.2
Atru.chr8.1077 Acer truncatum HOM05D003703 ORTHO05D004278 9.7e-08 60.8 166 33.7
Sabra16G0051300 Salix brachista HOM05D003703 ORTHO05D004278 9.7e-08 60.8 158 32.9
SGA_v2.0_scaffold4546G54500 Striga asiatica HOM05D003703 ORTHO05D004278 9.7e-08 60.8 154 34.4
TWI74G0378 Tripterygium wilfordii HOM05D003703 ORTHO05D004278 9.7e-08 60.8 145 33.1
Oeu035192.1 Olea europaea HOM05D003703 ORTHO05D004278 1.3e-07 60.5 155 34.2
Prupe.7G075500 Prunus persica HOM05D003703 ORTHO05D004278 1.3e-07 60.5 134 38.1
Migut.K00046 Erythranthe guttata HOM05D003703 ORTHO05D004278 1.7e-07 60.1 197 30.5
Nitab4.5_0002035g0010 Nicotiana tabacum HOM05D003703 ORTHO05D004278 1.7e-07 60.1 153 30.7
Os04g0665666 Oryza sativa ssp. japonica HOM05D003703 ORTHO05D004278 1.7e-07 60.1 39 76.9
SalBow1G5050 Salvia bowleyana HOM05D003703 ORTHO05D004278 1.7e-07 60.1 165 32.1
Sc19g0006980 Simmondsia chinensis HOM05D003703 ORTHO05D004278 1.7e-07 60.1 39 76.9
TAR369G1018 Trochodendron aralioides HOM05D003703 ORTHO05D004278 1.7e-07 60.1 156 33.3
Cpa.g.c33371 Carica papaya HOM05D003703 ORTHO05D004278 2.2e-07 59.7 97 43.3
ECA236G4442 Erigeron canadensis HOM05D003703 ORTHO05D004278 2.2e-07 59.7 122 36.1
PSO017G5564 Papaver somniferum HOM05D003703 ORTHO05D004278 2.2e-07 59.7 36 75.0
CSS0005195 Camellia sinensis var. sinensis HOM05D003703 ORTHO05D004278 2.8e-07 59.3 80 40.0
CsaV3_3G038930 Cucumis sativus L. HOM05D003703 ORTHO05D004278 2.8e-07 59.3 137 36.5
Eucgr.K01832 Eucalyptus grandis HOM05D003703 ORTHO05D004278 2.8e-07 59.3 97 42.3
Sed0017921 Sechium edule HOM05D003703 ORTHO05D004278 2.8e-07 59.3 142 35.9
CiPaw.09G031500 Carya illinoinensis HOM05D003703 ORTHO05D004278 3.7e-07 58.9 157 33.1
FvH4_6g22530 Fragaria vesca HOM05D003703 ORTHO05D004278 3.7e-07 58.9 95 41.1
FAN14G3432 Fragaria x ananassa HOM05D003703 ORTHO05D004278 3.7e-07 58.9 95 41.1
FAN14G3905 Fragaria x ananassa HOM05D003703 ORTHO05D004278 3.7e-07 58.9 95 41.1
Lalb_Chr18g0047801 Lupinus albus HOM05D003703 ORTHO05D004278 3.7e-07 58.9 46 69.6
Oeu007772.1 Olea europaea HOM05D003703 ORTHO05D004278 3.7e-07 58.9 149 34.2
Actinidia40438 Actinidia chinensis HOM05D003703 ORTHO05D004278 4.8e-07 58.5 153 34.6
AT2G42180 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 4.8e-07 58.5 38 76.3
COL.COLO4_36150 Corchorus olitorius HOM05D003703 ORTHO05D004278 4.8e-07 58.5 150 30.7
DCAR_017016 Daucus carota HOM05D003703 ORTHO05D004278 4.8e-07 58.5 82 41.5
Gohir.D01G177600 Gossypium hirsutum HOM05D003703 ORTHO05D004278 4.8e-07 58.5 151 34.4
Lalb_Chr15g0078951 Lupinus albus HOM05D003703 ORTHO05D004278 4.8e-07 58.5 52 59.6
Phvul.001G141500 Phaseolus vulgaris HOM05D003703 ORTHO05D004278 4.8e-07 58.5 63 57.1
SalBow1G5631 Salvia bowleyana HOM05D003703 ORTHO05D004278 4.8e-07 58.5 145 34.5
CAN.G515.11 Capsicum annuum HOM05D003703 ORTHO05D004278 6.3e-07 58.2 155 28.4
ClCG09G019210 Citrullus lanatus HOM05D003703 ORTHO05D004278 6.3e-07 58.2 149 32.9
Haze_19973 Corylus avellana HOM05D003703 ORTHO05D004278 6.3e-07 58.2 112 35.7
FAN02G0416 Fragaria x ananassa HOM05D003703 ORTHO05D004278 6.3e-07 58.2 167 32.3
MD14G1059200 Malus domestica HOM05D003703 ORTHO05D004278 6.3e-07 58.2 134 37.3
THA.LOC104826767 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 6.3e-07 58.2 121 36.4
CDE02G1004 Ceratophyllum demersum HOM05D003703 ORTHO05D004278 8.2e-07 57.8 155 34.2
Gorai.002G225600 Gossypium raimondii HOM05D003703 ORTHO05D004278 8.2e-07 57.8 151 34.4
Os09g0279200 Oryza sativa ssp. japonica HOM05D003703 ORTHO05D004278 8.2e-07 57.8 103 38.8
PSO063G6729 Papaver somniferum HOM05D003703 ORTHO05D004278 8.2e-07 57.8 94 41.5
THA.LOC104802486 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 8.2e-07 57.8 38 73.7
MSTRG.6472 Avicennia marina HOM05D003703 ORTHO05D004278 1.1e-06 57.4 130 33.8
Migut.J01826 Erythranthe guttata HOM05D003703 ORTHO05D004278 1.1e-06 57.4 148 36.5
Gohir.A01G192300 Gossypium hirsutum HOM05D003703 ORTHO05D004278 1.1e-06 57.4 151 34.4
Lj2P370T14 Lonicera japonica HOM05D003703 ORTHO05D004278 1.1e-06 57.4 157 33.8
HanXRQChr13g0389341 Helianthus annuus HOM05D003703 ORTHO05D004278 1.4e-06 57.0 47 61.7
Sopen03g016210 Solanum pennellii HOM05D003703 ORTHO05D004278 1.4e-06 57.0 116 36.2
Ah.04g152400 Amaranthus hybridus HOM05D003703 ORTHO05D004278 1.8e-06 56.6 111 40.5
AL4G40540 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 1.8e-06 56.6 38 76.3
EL10Ac3g06932 Beta vulgaris HOM05D003703 ORTHO05D004278 1.8e-06 56.6 37 73.0
Potri.006G191100 Populus trichocarpa HOM05D003703 ORTHO05D004278 1.8e-06 56.6 157 31.2
BcaC02g12466 Brassica carinata HOM05D003703 ORTHO05D004278 2.4e-06 56.2 37 75.7
C04p03340 Brassica napus HOM05D003703 ORTHO05D004278 2.4e-06 56.2 37 75.7
CsaV3_5G027200 Cucumis sativus L. HOM05D003703 ORTHO05D004278 2.4e-06 56.2 144 33.3
DCAR_013556 Daucus carota HOM05D003703 ORTHO05D004278 2.4e-06 56.2 140 33.6
FAN09G0581 Fragaria x ananassa HOM05D003703 ORTHO05D004278 2.4e-06 56.2 167 32.3
Lju124C28G5 Lonicera japonica HOM05D003703 ORTHO05D004278 2.4e-06 56.2 147 36.1
Cfa020181 Carpinus fangiana HOM05D003703 ORTHO05D004278 3.1e-06 55.8 161 30.4
MELO3C021570.2 Cucumis melo HOM05D003703 ORTHO05D004278 3.1e-06 55.8 145 35.9
Sed0013585 Sechium edule HOM05D003703 ORTHO05D004278 3.1e-06 55.8 147 33.3
TPR.G18214 Trifolium pratense HOM05D003703 ORTHO05D004278 3.1e-06 55.8 160 31.9
arahy.Tifrunner.gnm1.ann1.6W7ZDH Arachis hypogaea HOM05D003703 ORTHO05D004278 4.1e-06 55.5 39 74.4
CDE05G1581 Ceratophyllum demersum HOM05D003703 ORTHO05D004278 4.1e-06 55.5 155 31.6
Cc06_g16110 Coffea canephora HOM05D003703 ORTHO05D004278 4.1e-06 55.5 188 31.4
Psat3g069120 Pisum sativum HOM05D003703 ORTHO05D004278 4.1e-06 55.5 116 38.8
Sp4g24360 Schrenkiella parvula HOM05D003703 ORTHO05D004278 4.1e-06 55.5 38 71.1
AUR62024314 Chenopodium quinoa HOM05D003703 ORTHO05D004278 5.3e-06 55.1 37 70.3
Glyma.03G143800 Glycine max HOM05D003703 ORTHO05D004278 5.3e-06 55.1 40 72.5
Glyma.09G112700 Glycine max HOM05D003703 ORTHO05D004278 5.3e-06 55.1 83 42.2
Lalb_Chr07g0188981 Lupinus albus HOM05D003703 ORTHO05D004278 5.3e-06 55.1 41 68.3
DCAR_017017 Daucus carota HOM05D003703 ORTHO05D004278 7.0e-06 54.7 151 31.1
Psat6g128520 Pisum sativum HOM05D003703 ORTHO05D004278 7.0e-06 54.7 39 64.1
SEGI_01918 Sequoiadendron giganteum HOM05D003703 ORTHO05D004278 7.0e-06 54.7 47 57.4
VMungo1383G3663 Vigna mungo HOM05D003703 ORTHO05D004278 7.0e-06 54.7 152 33.6
Ca_08513_v3 Cicer arietinum L. HOM05D003703 ORTHO05D004278 9.1e-06 54.3 38 73.7
MD12G1058500 Malus domestica HOM05D003703 ORTHO05D004278 9.1e-06 54.3 131 37.4


User provided reference genes

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