Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0605G353 Amborella trichopoda HOM05D004651 ORTHO05D005761 9.7e-62 240.0 121 100.0
ATR0605G299 Amborella trichopoda HOM05D004651 ORTHO05D005761 3.6e-56 221.5 121 92.6
Aqoxy2G00117 Aquilegia oxysepala HOM05D004651 ORTHO05D005761 3.1e-36 155.2 103 70.9
Nn2g15489 Nelumbo nucifera HOM05D004651 ORTHO05D005761 9.2e-36 153.7 116 64.7
MBI01_g38800_MAGBIO Magnolia biondii HOM05D004651 ORTHO05D005761 1.0e-34 150.2 110 65.5
CDE05G0104 Ceratophyllum demersum HOM05D004651 ORTHO05D005761 1.3e-34 149.8 115 65.2
Cc06_g16440 Coffea canephora HOM05D004651 ORTHO05D005761 1.3e-34 149.8 104 68.3
CDE05G0718 Ceratophyllum demersum HOM05D004651 ORTHO05D005761 5.0e-34 147.9 107 64.5
CSS0019774 Camellia sinensis var. sinensis HOM05D004651 ORTHO05D005761 6.6e-34 147.5 104 68.3
CSS0028305 Camellia sinensis var. sinensis HOM05D004651 ORTHO05D005761 6.6e-34 147.5 104 68.3
Hma1.2p1_0856F.1_g229150 Hydrangea macrophylla HOM05D004651 ORTHO05D005761 8.6e-34 147.1 115 60.0
Ah.04g152020 Amaranthus hybridus HOM05D004651 ORTHO05D005761 1.9e-33 146.0 109 62.4
Dinv24113 Davidia involucrata HOM05D004651 ORTHO05D005761 1.9e-33 146.0 112 59.8
Rhsim03G0011100 Rhododendron simsii HOM05D004651 ORTHO05D005761 1.9e-33 146.0 102 67.6
DCAR_013570 Daucus carota HOM05D004651 ORTHO05D005761 4.3e-33 144.8 110 62.7
Sed0027459 Sechium edule HOM05D004651 ORTHO05D005761 4.3e-33 144.8 112 59.8
Actinidia38568 Actinidia chinensis HOM05D004651 ORTHO05D005761 5.6e-33 144.4 113 61.1
Ah.13g076160 Amaranthus hybridus HOM05D004651 ORTHO05D005761 5.6e-33 144.4 106 65.1
Sc19g0006860 Simmondsia chinensis HOM05D004651 ORTHO05D005761 5.6e-33 144.4 112 60.7
AUR62024379 Chenopodium quinoa HOM05D004651 ORTHO05D005761 7.3e-33 144.1 106 65.1
AUR62025977 Chenopodium quinoa HOM05D004651 ORTHO05D005761 7.3e-33 144.1 106 65.1
ClCG04G000490 Citrullus lanatus HOM05D004651 ORTHO05D005761 9.5e-33 143.7 107 62.6
Lsat_1_v5_gn_9_27580 Lactuca sativa HOM05D004651 ORTHO05D005761 9.5e-33 143.7 103 67.0
Zm00001eb034850 Zea mays HOM05D004651 ORTHO05D005761 9.5e-33 143.7 106 61.3
Dinv18101 Davidia involucrata HOM05D000001 ORTHO05D000003 1.6e-32 142.9 103 65.0
Cfa016877 Carpinus fangiana HOM05D004651 ORTHO05D005761 2.1e-32 142.5 111 62.2
HanXRQChr10g0294281 Helianthus annuus HOM05D004651 ORTHO05D005761 2.1e-32 142.5 102 65.7
QL07p022191 Quercus lobata HOM05D004651 ORTHO05D005761 2.8e-32 142.1 107 60.7
Glyma.02G174400 Glycine max HOM05D004651 ORTHO05D005761 3.6e-32 141.7 100 67.0
Oeu033769.1 Olea europaea HOM05D004651 ORTHO05D005761 4.7e-32 141.4 101 67.3
Sabra06G0040200 Salix brachista HOM05D004651 ORTHO05D005761 4.7e-32 141.4 112 58.9
Zm00001eb316630 Zea mays HOM05D004651 ORTHO05D005761 4.7e-32 141.4 108 61.1
EL10Ac3g06986 Beta vulgaris HOM05D004651 ORTHO05D005761 6.1e-32 141.0 103 67.0
Haze_19923 Corylus avellana HOM05D004651 ORTHO05D005761 6.1e-32 141.0 106 64.2
Gohir.D11G330900 Gossypium hirsutum HOM05D004651 ORTHO05D005761 6.1e-32 141.0 107 63.6
Gorai.007G361600 Gossypium raimondii HOM05D004651 ORTHO05D005761 6.1e-32 141.0 107 63.6
Glyma.10G093900 Glycine max HOM05D004651 ORTHO05D005761 8.0e-32 140.6 100 66.0
Lsat_1_v5_gn_5_163881 Lactuca sativa HOM05D006723 ORTHO05D008194 8.0e-32 140.6 103 67.0
Gohir.D11G330800 Gossypium hirsutum HOM05D004651 ORTHO05D005761 1.0e-31 140.2 109 62.4
MD12G1064300 Malus domestica HOM05D004651 ORTHO05D005761 1.0e-31 140.2 110 63.6
RcHm_v2.0_Chr3g0480781 Rosa chinensis HOM05D004651 ORTHO05D005761 1.0e-31 140.2 110 60.9
Gorai.007G361500 Gossypium raimondii HOM05D004651 ORTHO05D005761 1.4e-31 139.8 82 74.4
Manes.09G030500 Manihot esculenta HOM05D004651 ORTHO05D005761 1.4e-31 139.8 103 64.1
Gohir.A11G313600 Gossypium hirsutum HOM05D004651 ORTHO05D005761 1.8e-31 139.4 109 61.5
MD14G1064400 Malus domestica HOM05D004651 ORTHO05D005761 1.8e-31 139.4 100 66.0
TWI34G0893 Tripterygium wilfordii HOM05D004651 ORTHO05D005761 1.8e-31 139.4 113 58.4
TWI34G1227 Tripterygium wilfordii HOM05D004651 ORTHO05D005761 1.8e-31 139.4 113 58.4
Ciclev10006760m.g Citrus clementina HOM05D000001 ORTHO05D000003 2.3e-31 139.0 102 65.7
MELO3C026725.2 Cucumis melo HOM05D004651 ORTHO05D005761 2.3e-31 139.0 104 62.5
Thecc.05G165000 Theobroma cacao HOM05D004651 ORTHO05D005761 2.3e-31 139.0 78 75.6
CsaV3_4G011920 Cucumis sativus L. HOM05D004651 ORTHO05D005761 3.0e-31 138.7 104 63.5
CANSAT80G2258 Cannabis sativa HOM05D004651 ORTHO05D005761 4.0e-31 138.3 104 62.5
Gohir.A11G313700 Gossypium hirsutum HOM05D004651 ORTHO05D005761 4.0e-31 138.3 107 63.6
COL.COLO4_28721 Corchorus olitorius HOM05D004651 ORTHO05D005761 5.2e-31 137.9 75 77.3
HPP92_022788 Vanilla planifolia HOM05D004651 ORTHO05D005761 5.2e-31 137.9 104 63.5
arahy.Tifrunner.gnm1.ann1.F3K4LC Arachis hypogaea HOM05D005399 ORTHO05D006347 6.8e-31 137.5 100 65.0
Sabra16G0055100 Salix brachista HOM05D004651 ORTHO05D005761 6.8e-31 137.5 111 56.8
FvH4_6g22990 Fragaria vesca HOM05D004651 ORTHO05D005761 8.9e-31 137.1 110 60.0
HanXRQChr13g0391011 Helianthus annuus HOM05D004651 ORTHO05D005761 8.9e-31 137.1 75 80.0
PSO384G0298 Papaver somniferum HOM05D004651 ORTHO05D005761 8.9e-31 137.1 119 57.1
GSVIVG01033348001 Vitis vinifera HOM05D000001 ORTHO05D000003 8.9e-31 137.1 103 63.1
Potri.006G056900 Populus trichocarpa HOM05D004651 ORTHO05D005761 1.2e-30 136.7 114 55.3
Atru.chr1.949 Acer truncatum HOM05D004651 ORTHO05D005761 1.5e-30 136.3 75 77.3
Nitab4.5_0000603g0080 Nicotiana tabacum HOM05D004651 ORTHO05D005761 1.5e-30 136.3 105 61.9
SGA_v2.0_scaffold105G30461 Striga asiatica HOM05D004651 ORTHO05D005761 1.5e-30 136.3 106 60.4
TAR623G0603 Trochodendron aralioides HOM05D004651 ORTHO05D005761 1.5e-30 136.3 107 61.7
FAN02G2491 Fragaria x ananassa HOM05D004651 ORTHO05D005761 2.0e-30 136.0 100 65.0
FAN09G0537 Fragaria x ananassa HOM05D004651 ORTHO05D005761 2.0e-30 136.0 100 65.0
CiPaw.10G029700 Carya illinoinensis HOM05D004651 ORTHO05D005761 2.6e-30 135.6 103 62.1
Nitab4.5_0003477g0030 Nicotiana tabacum HOM05D004651 ORTHO05D005761 2.6e-30 135.6 103 64.1
PSO339G4089 Papaver somniferum HOM05D004651 ORTHO05D005761 2.6e-30 135.6 114 58.8
Sed0009176 Sechium edule HOM05D004651 ORTHO05D005761 2.6e-30 135.6 100 63.0
MD07G1000900 Malus domestica HOM05D004651 ORTHO05D005761 3.4e-30 135.2 90 67.8
Manes.08G047600 Manihot esculenta HOM05D004651 ORTHO05D005761 3.4e-30 135.2 107 59.8
Nitab4.5_0001347g0050 Nicotiana tabacum HOM05D004651 ORTHO05D005761 3.4e-30 135.2 106 60.4
MSTRG.6460 Avicennia marina HOM05D004651 ORTHO05D005761 4.4e-30 134.8 110 55.5
Os09g0487500 Oryza sativa ssp. japonica HOM05D004651 ORTHO05D005761 5.7e-30 134.4 109 62.4
Psat6g130960 Pisum sativum HOM05D004651 ORTHO05D005761 7.5e-30 134.0 97 66.0
Prupe.7G069800 Prunus persica HOM05D004651 ORTHO05D005761 7.5e-30 134.0 106 62.3
Duzib128G1036 Durio zibethinus HOM05D004651 ORTHO05D005761 9.8e-30 133.7 78 71.8
FAN05G1131 Fragaria x ananassa HOM05D004651 ORTHO05D005761 9.8e-30 133.7 100 64.0
Lj5g0006028 Lotus japonicus HOM05D004651 ORTHO05D005761 9.8e-30 133.7 100 63.0
Medtr1g059290 Medicago truncatula HOM05D004651 ORTHO05D005761 9.8e-30 133.7 108 58.3
Phvul.007G256600 Phaseolus vulgaris HOM05D004651 ORTHO05D005761 9.8e-30 133.7 100 63.0
TWI60G1376 Tripterygium wilfordii HOM05D004651 ORTHO05D005761 9.8e-30 133.7 113 57.5
Duzib093G1593 Durio zibethinus HOM05D004651 ORTHO05D005761 1.3e-29 133.3 105 61.0
ECA236G1810 Erigeron canadensis HOM05D004651 ORTHO05D005761 1.3e-29 133.3 100 65.0
Potri.016G051400 Populus trichocarpa HOM05D004651 ORTHO05D005761 1.3e-29 133.3 112 54.5
PGR004G2434 Punica granatum HOM05D004651 ORTHO05D005761 1.3e-29 133.3 84 69.0
Ca_04847_v3 Cicer arietinum L. HOM05D004651 ORTHO05D005761 1.7e-29 132.9 102 62.7
Cpa.g.sc85.122 Carica papaya HOM05D004651 ORTHO05D005761 2.2e-29 132.5 81 67.9
CiPaw.09G033900 Carya illinoinensis HOM05D004651 ORTHO05D005761 2.2e-29 132.5 103 61.2
Lalb_Chr21g0319241 Lupinus albus HOM05D004651 ORTHO05D005761 2.2e-29 132.5 106 59.4
Migut.J01795 Erythranthe guttata HOM05D004651 ORTHO05D005761 2.9e-29 132.1 121 53.7
SHI26332 Sapria himalayana HOM05D004651 ORTHO05D005761 3.7e-29 131.7 83 67.5
Sopen02g030210 Solanum pennellii HOM05D004651 ORTHO05D005761 3.7e-29 131.7 103 60.2
Lalb_Chr02g0159821 Lupinus albus HOM05D004651 ORTHO05D005761 6.4e-29 131.0 100 62.0
Aa31LG10G12520 Aethionema arabicum HOM05D004651 ORTHO05D005761 1.1e-28 130.2 84 63.1
Solyc02g085540.1 Solanum lycopersicum HOM05D004651 ORTHO05D005761 1.1e-28 130.2 103 59.2
PGSC0003DMG400012662 Solanum tuberosum HOM05D004651 ORTHO05D005761 1.1e-28 130.2 103 59.2
AT3G57785 Arabidopsis thaliana HOM05D004651 ORTHO05D005761 1.4e-28 129.8 84 63.1
BraA05t19275Z Brassica rapa HOM05D004651 ORTHO05D005761 1.4e-28 129.8 84 63.1
Carub.0005s2464 Capsella rubella HOM05D004651 ORTHO05D005761 1.4e-28 129.8 84 63.1
Thhalv10017449m.g Eutrema salsugineum HOM05D004651 ORTHO05D005761 1.4e-28 129.8 84 63.1
Sp4g24480 Schrenkiella parvula HOM05D004651 ORTHO05D005761 1.4e-28 129.8 84 63.1
THA.LOC104802364 Tarenaya hassleriana HOM05D004651 ORTHO05D005761 1.4e-28 129.8 78 67.9
THA.LOC104819088 Tarenaya hassleriana HOM05D004651 ORTHO05D005761 1.4e-28 129.8 78 67.9
AL5G39450 Arabidopsis lyrata HOM05D004651 ORTHO05D005761 1.8e-28 129.4 84 63.1
BcaC02g07250 Brassica carinata HOM05D004651 ORTHO05D005761 1.8e-28 129.4 78 67.9
A04p32130 Brassica napus HOM05D004651 ORTHO05D005761 1.8e-28 129.4 78 67.9
C04p69620 Brassica napus HOM05D004651 ORTHO05D005761 1.8e-28 129.4 78 67.9
BolC4t28461H Brassica oleracea HOM05D004651 ORTHO05D005761 1.8e-28 129.4 78 67.9
BraA04t18667Z Brassica rapa HOM05D004651 ORTHO05D005761 1.8e-28 129.4 78 67.9
Eucgr.A02412 Eucalyptus grandis HOM05D000001 ORTHO05D000003 1.8e-28 129.4 75 72.0
Peaxi162Scf00285g00014 Petunia axillaris HOM05D004651 ORTHO05D005761 1.8e-28 129.4 100 63.0
Peaxi162Scf00406g00069 Petunia axillaris HOM05D004651 ORTHO05D005761 1.8e-28 129.4 105 58.1
BcaC01g05307 Brassica carinata HOM05D004651 ORTHO05D005761 2.4e-28 129.0 82 64.6
A03p23620 Brassica napus HOM05D004651 ORTHO05D005761 2.4e-28 129.0 82 64.6
A05p02830 Brassica napus HOM05D004651 ORTHO05D005761 2.4e-28 129.0 84 63.1
BraA03t11578Z Brassica rapa HOM05D004651 ORTHO05D005761 2.4e-28 129.0 82 64.6
Nitab4.5_0004063g0110 Nicotiana tabacum HOM05D004651 ORTHO05D005761 2.4e-28 129.0 106 58.5
BcaC02g12474 Brassica carinata HOM05D004651 ORTHO05D005761 3.2e-28 128.6 78 66.7
C04p03440 Brassica napus HOM05D004651 ORTHO05D005761 3.2e-28 128.6 78 66.7
BolC4t21980H Brassica oleracea HOM05D004651 ORTHO05D005761 3.2e-28 128.6 78 66.7
BcaNung04397 Brassica carinata HOM05D004651 ORTHO05D005761 4.1e-28 128.3 78 66.7
Thhalv10006322m.g Eutrema salsugineum HOM05D004651 ORTHO05D005761 4.1e-28 128.3 84 61.9
AL4G40670 Arabidopsis lyrata HOM05D004651 ORTHO05D005761 7.0e-28 127.5 84 61.9
AT2G42310 Arabidopsis thaliana HOM05D004651 ORTHO05D005761 7.0e-28 127.5 84 61.9
BcaB06g29236 Brassica carinata HOM05D004651 ORTHO05D005761 7.0e-28 127.5 78 66.7
BcaC02g07246 Brassica carinata HOM05D004651 ORTHO05D005761 7.0e-28 127.5 78 66.7
TPR.G25632 Trifolium pratense HOM05D004651 ORTHO05D005761 7.0e-28 127.5 71 76.1
Carub.0004s2465 Capsella rubella HOM05D004651 ORTHO05D005761 9.2e-28 127.1 84 61.9
Aa31LG1G23980 Aethionema arabicum HOM05D004651 ORTHO05D005761 1.2e-27 126.7 84 61.9
SGA_v2.0_scaffold94G28447 Striga asiatica HOM05D004651 ORTHO05D005761 1.6e-27 126.3 75 69.3
CAN.G358.117 Capsicum annuum HOM05D004651 ORTHO05D005761 2.7e-27 125.6 73 71.2
Migut.K00065 Erythranthe guttata HOM05D004651 ORTHO05D005761 7.8e-27 124.0 112 53.6
CARHR137350 Cardamine hirsuta HOM05D004651 ORTHO05D005761 1.3e-26 123.2 84 59.5
Os08g0505001 Oryza sativa ssp. japonica HOM05D004651 ORTHO05D005761 2.5e-25 119.0 103 58.3
Sp5g04900 Schrenkiella parvula HOM05D004651 ORTHO05D005761 7.3e-25 117.5 84 56.0
SEGI_06557 Sequoiadendron giganteum HOM05D004651 ORTHO05D005761 4.0e-23 111.7 101 52.5
CSS0043471 Camellia sinensis var. sinensis HOM05D004651 ORTHO05D005761 5.8e-22 107.8 81 55.6
C03p28150 Brassica napus HOM05D004651 ORTHO05D005761 1.7e-21 106.3 63 68.3
Mapoly0006s0067 Marchantia polymorpha HOM05D004651 ORTHO05D005761 2.2e-21 105.9 111 46.8
AagrBONN_evm.TU.Sc2ySwM_362.1672 Anthoceros agrestis HOM05D004651 ORTHO05D005761 3.7e-21 105.1 63 66.7
Prupe.5G050600 Prunus persica HOM05D004651 ORTHO05D005761 8.3e-21 104.0 87 58.6
Pp3c3_16790 Physcomitrium patens HOM05D004651 ORTHO05D005761 2.7e-19 99.0 101 47.5
CBR_g8350 Chara braunii HOM05D004651 ORTHO05D005761 3.9e-18 95.1 72 55.6
RcHm_v2.0_Chr5g0057691 Rosa chinensis HOM05D004651 ORTHO05D005761 3.9e-18 95.1 55 72.7
Rhsim10G0114900 Rhododendron simsii HOM05D004651 ORTHO05D005761 4.7e-16 88.2 59 69.5
Oeu038276.1 Olea europaea HOM05D004651 ORTHO05D005761 1.2e-14 83.6 56 64.3
SMO203G0043 Selaginella moellendorffii HOM05D004651 ORTHO05D005761 7.5e-14 80.9 70 47.1
MCO03G385 Micromonas commoda HOM05D004651 ORTHO05D005761 1.3e-13 80.1 65 53.8
MBI11_g15908_MAGBIO Magnolia biondii HOM05D004651 ORTHO05D005761 6.4e-13 77.8 69 55.1
BcaB06g26137 Brassica carinata HOM05D004651 ORTHO05D005761 1.1e-12 77.0 66 53.0
SGA_v2.0_scaffold18G08230 Striga asiatica HOM05D004651 ORTHO05D401477 4.4e-06 55.1 50 56.0


User provided reference genes

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