Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0605G345 Amborella trichopoda HOM05D004075 ORTHO05D004538 6.4e-250 867.1 476 100.0
MBI01_g18891_MAGBIO Magnolia biondii HOM05D004075 ORTHO05D004538 1.7e-48 198.0 518 32.8
Nn2g15469 Nelumbo nucifera HOM05D004075 ORTHO05D004538 1.0e-42 178.7 526 32.7
Migut.O00687 Erythranthe guttata HOM05D004075 ORTHO05D004538 1.7e-40 171.4 510 32.4
TAR636G2153 Trochodendron aralioides HOM05D004075 ORTHO05D004538 4.9e-40 169.9 509 32.4
GSVIVG01032083001 Vitis vinifera HOM05D004075 ORTHO05D004538 1.8e-39 167.9 490 33.7
Lj9A631T51 Lonicera japonica HOM05D004075 ORTHO05D004538 1.6e-38 164.9 205 49.8
TAR633G2155 Trochodendron aralioides HOM05D004075 ORTHO05D004538 6.6e-37 159.5 508 31.3
CSS0023689 Camellia sinensis var. sinensis HOM05D004075 ORTHO05D004538 1.9e-36 157.9 497 30.8
Peaxi162Scf00428g00317 Petunia axillaris HOM05D004075 ORTHO05D004538 1.9e-36 157.9 230 44.3
CSS0027632 Camellia sinensis var. sinensis HOM05D004075 ORTHO05D004538 2.5e-36 157.5 496 30.2
Oeu047570.1 Olea europaea HOM05D004075 ORTHO05D004538 3.3e-36 157.1 234 43.6
PGSC0003DMG400006871 Solanum tuberosum HOM05D004075 ORTHO05D004538 5.6e-36 156.4 207 47.8
QL04p007893 Quercus lobata HOM05D004075 ORTHO05D004538 1.2e-35 155.2 488 31.4
TWI53G1782 Tripterygium wilfordii HOM05D004075 ORTHO05D004538 1.2e-35 155.2 483 30.8
QL04p006698 Quercus lobata HOM05D004075 ORTHO05D004538 2.1e-35 154.5 481 31.8
TWI73G1281 Tripterygium wilfordii HOM05D004075 ORTHO05D004538 3.6e-35 153.7 202 45.5
CANSAT80G2751 Cannabis sativa HOM05D004075 ORTHO05D004538 8.0e-35 152.5 217 46.1
Nitab4.5_0000634g0160 Nicotiana tabacum HOM05D004075 ORTHO05D004538 1.0e-34 152.1 200 46.5
CAN.G1820.5 Capsicum annuum HOM05D004075 ORTHO05D004538 1.4e-34 151.8 206 43.2
Oeu063166.1 Olea europaea HOM05D004075 ORTHO05D004538 1.4e-34 151.8 499 31.1
Oeu063168.1 Olea europaea HOM05D004075 ORTHO05D004538 1.4e-34 151.8 499 31.1
Dinv43449 Davidia involucrata HOM05D004075 ORTHO05D004538 2.3e-34 151.0 497 31.0
Sabra09G0045700 Salix brachista HOM05D004075 ORTHO05D004538 2.3e-34 151.0 494 30.8
Sopen01g034160 Solanum pennellii HOM05D004075 ORTHO05D004538 2.3e-34 151.0 242 42.1
Thecc.01G411500 Theobroma cacao HOM05D004075 ORTHO05D004538 3.0e-34 150.6 491 30.3
Solyc01g087080.4 Solanum lycopersicum HOM05D004075 ORTHO05D004538 4.0e-34 150.2 242 42.1
Cc02_g27890 Coffea canephora HOM05D004075 ORTHO05D004538 1.5e-33 148.3 247 42.1
Manes.07G005500 Manihot esculenta HOM05D004075 ORTHO05D004538 1.5e-33 148.3 237 42.2
DCAR_029668 Daucus carota HOM05D004075 ORTHO05D004538 2.6e-33 147.5 495 30.9
Nitab4.5_0002477g0020 Nicotiana tabacum HOM05D004075 ORTHO05D004538 2.6e-33 147.5 206 44.2
Dinv09359 Davidia involucrata HOM05D004075 ORTHO05D004538 3.4e-33 147.1 228 41.7
Ciclev10031906m.g Citrus clementina HOM05D004075 ORTHO05D004538 4.4e-33 146.7 215 45.1
Prupe.2G012400 Prunus persica HOM05D004075 ORTHO05D004538 4.4e-33 146.7 206 42.7
Potri.009G061900 Populus trichocarpa HOM05D004075 ORTHO05D004538 5.8e-33 146.4 217 44.2
RcHm_v2.0_Chr1g0315881 Rosa chinensis HOM05D004075 ORTHO05D004538 5.8e-33 146.4 237 41.4
SGA_v2.0_scaffold5G02972 Striga asiatica HOM05D004075 ORTHO05D004538 7.5e-33 146.0 498 29.3
Glyma.08G155000 Glycine max HOM05D004075 ORTHO05D004538 9.8e-33 145.6 231 42.4
Cpa.g.sc245.12 Carica papaya HOM05D004075 ORTHO05D004538 2.2e-32 144.4 220 45.5
vmacro13660 Vaccinium macrocarpon HOM05D004075 ORTHO05D004538 2.9e-32 144.1 215 42.3
Haze_03220 Corylus avellana HOM05D004075 ORTHO05D004538 3.7e-32 143.7 200 44.0
PSO339G0483 Papaver somniferum HOM05D004075 ORTHO05D004538 3.7e-32 143.7 506 30.8
MSTRG.5020 Avicennia marina HOM05D004075 ORTHO05D004538 4.9e-32 143.3 492 30.3
Atru.chr11.2656 Acer truncatum HOM05D004075 ORTHO05D004538 1.1e-31 142.1 235 41.3
FvH4_7g00980 Fragaria vesca HOM05D004075 ORTHO05D004538 1.4e-31 141.7 232 40.9
FAN10G0771 Fragaria x ananassa HOM05D004075 ORTHO05D004538 1.4e-31 141.7 232 40.9
Glyma.15G273700 Glycine max HOM05D004075 ORTHO05D004538 1.8e-31 141.4 493 29.2
FAN06G1907 Fragaria x ananassa HOM05D004075 ORTHO05D004538 2.4e-31 141.0 232 41.8
SalBow8G1917 Salvia bowleyana HOM05D004075 ORTHO05D004538 2.4e-31 141.0 229 41.9
vmacro21184 Vaccinium macrocarpon HOM05D004075 ORTHO05D004538 2.4e-31 141.0 230 39.6
FAN01G1840 Fragaria x ananassa HOM05D004075 ORTHO05D004538 4.1e-31 140.2 232 40.9
Actinidia20669 Actinidia chinensis HOM05D004075 ORTHO05D004538 5.4e-31 139.8 238 40.3
Haze_02822 Corylus avellana HOM05D004075 ORTHO05D004538 5.4e-31 139.8 212 42.5
ECA240G2351 Erigeron canadensis HOM05D004075 ORTHO05D004538 7.0e-31 139.4 234 41.0
Lj3g0017759 Lotus japonicus HOM05D004075 ORTHO05D004538 7.0e-31 139.4 211 43.6
Rhsim01G0129700 Rhododendron simsii HOM05D004075 ORTHO05D004538 7.0e-31 139.4 216 42.1
CsaV3_7G031100 Cucumis sativus L. HOM05D004075 ORTHO05D004538 9.2e-31 139.0 225 41.8
Lalb_Chr25g0283121 Lupinus albus HOM05D004075 ORTHO05D004538 1.2e-30 138.7 200 43.0
MD07G1009400 Malus domestica HOM05D004075 ORTHO05D004538 1.2e-30 138.7 491 28.3
Hma1.2p1_0293F.1_g116200 Hydrangea macrophylla HOM05D004075 ORTHO05D004538 2.0e-30 137.9 497 31.2
MD12G1066800 Malus domestica HOM05D004075 ORTHO05D004538 2.7e-30 137.5 199 42.7
Sc11g0009230 Simmondsia chinensis HOM05D004075 ORTHO05D004538 2.7e-30 137.5 197 44.2
Gohir.A08G144800 Gossypium hirsutum HOM05D004075 ORTHO05D004538 3.5e-30 137.1 231 42.9
PSO384G3961 Papaver somniferum HOM05D004075 ORTHO05D004538 3.5e-30 137.1 512 30.9
arahy.Tifrunner.gnm1.ann1.N8UE6G Arachis hypogaea HOM05D004075 ORTHO05D004538 4.6e-30 136.7 228 43.4
FAN03G2231 Fragaria x ananassa HOM05D004075 ORTHO05D004538 4.6e-30 136.7 234 40.2
Phvul.005G020800 Phaseolus vulgaris HOM05D004075 ORTHO05D004538 4.6e-30 136.7 496 29.4
Manes.10G143700 Manihot esculenta HOM05D004075 ORTHO05D004538 1.0e-29 135.6 495 30.3
VMungo1080G0731 Vigna mungo HOM05D004075 ORTHO05D004538 1.0e-29 135.6 511 29.0
Actinidia21555 Actinidia chinensis HOM05D004075 ORTHO05D004538 1.3e-29 135.2 497 30.0
MELO3C023547.2 Cucumis melo HOM05D004075 ORTHO05D004538 1.3e-29 135.2 229 39.3
ClCG09G004200 Citrullus lanatus HOM05D004075 ORTHO05D004538 1.7e-29 134.8 222 41.4
PGR031G2189 Punica granatum HOM05D004075 ORTHO05D004538 1.7e-29 134.8 237 41.8
Thecc.05G162200 Theobroma cacao HOM05D004075 ORTHO05D004538 2.3e-29 134.4 194 44.3
Rhsim07G0055100 Rhododendron simsii HOM05D004075 ORTHO05D004538 3.0e-29 134.0 241 38.6
Gohir.D08G165800 Gossypium hirsutum HOM05D004075 ORTHO05D004538 3.9e-29 133.7 231 42.4
Potri.001G267600 Populus trichocarpa HOM05D004075 ORTHO05D004538 5.0e-29 133.3 482 29.7
SalBow6G5115 Salvia bowleyana HOM05D004075 ORTHO05D004538 5.0e-29 133.3 485 30.3
Gorai.004G172900 Gossypium raimondii HOM05D004075 ORTHO05D004538 8.6e-29 132.5 231 42.0
MD02G1313000 Malus domestica HOM05D004075 ORTHO05D004538 8.6e-29 132.5 490 29.6
COL.COLO4_28674 Corchorus olitorius HOM05D004075 ORTHO05D004538 1.5e-28 131.7 195 42.6
THA.LOC104817133 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 1.9e-28 131.3 235 40.9
THA.LOC104819075 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 1.9e-28 131.3 235 40.9
COL.COLO4_23930 Corchorus olitorius HOM05D004075 ORTHO05D004538 5.6e-28 129.8 496 28.2
Duzib093G1674 Durio zibethinus HOM05D004075 ORTHO05D004538 7.3e-28 129.4 194 42.8
THA.LOC104826677 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 7.3e-28 129.4 233 42.1
Duzib106G1725 Durio zibethinus HOM05D004075 ORTHO05D004538 1.2e-27 128.6 230 39.1
Eucgr.J01269 Eucalyptus grandis HOM05D004075 ORTHO05D004538 1.2e-27 128.6 252 40.1
Lsat_1_v5_gn_9_117060 Lactuca sativa HOM05D004075 ORTHO05D004538 1.2e-27 128.6 233 42.1
MSTRG.28073 Avicennia marina HOM05D004075 ORTHO05D004538 2.1e-27 127.9 502 27.9
HanXRQChr03g0065861 Helianthus annuus HOM05D004075 ORTHO05D004538 2.8e-27 127.5 234 40.6
Lalb_Chr25g0287431 Lupinus albus HOM05D004075 ORTHO05D004538 2.8e-27 127.5 235 40.9
Aa31LG10G7190 Aethionema arabicum HOM05D004075 ORTHO05D004538 4.7e-27 126.7 194 41.8
Psat5g204000 Pisum sativum HOM05D004075 ORTHO05D004538 4.7e-27 126.7 224 40.2
arahy.Tifrunner.gnm1.ann1.J4WSSI Arachis hypogaea HOM05D004075 ORTHO05D004538 6.2e-27 126.3 250 39.2
Thhalv10010636m.g Eutrema salsugineum HOM05D004075 ORTHO05D004538 8.0e-27 125.9 198 43.4
Sed0000159 Sechium edule HOM05D004075 ORTHO05D004538 1.1e-26 125.6 227 39.6
HPP92_020393 Vanilla planifolia HOM05D004075 ORTHO05D004538 1.1e-26 125.6 221 38.5
Manes.08G048400 Manihot esculenta HOM05D004075 ORTHO05D004538 1.4e-26 125.2 233 39.9
BcaB02g08587 Brassica carinata HOM05D004075 ORTHO05D004538 2.3e-26 124.4 194 42.3
Prupe.7G067300 Prunus persica HOM05D004075 ORTHO05D004538 2.3e-26 124.4 204 42.2
Cfa016858 Carpinus fangiana HOM05D004075 ORTHO05D004538 3.1e-26 124.0 206 39.3
Zm00001eb005640 Zea mays HOM05D004075 ORTHO05D004538 3.1e-26 124.0 219 39.3
Dinv18084 Davidia involucrata HOM05D004075 ORTHO05D004538 6.8e-26 122.9 204 42.2
QL07p021680 Quercus lobata HOM05D004075 ORTHO05D004538 6.8e-26 122.9 208 40.9
VMungo1383G2046 Vigna mungo HOM05D004075 ORTHO05D004538 6.8e-26 122.9 208 43.3
HanXRQChr13g0420751 Helianthus annuus HOM05D004075 ORTHO05D004538 1.5e-25 121.7 198 41.4
Phvul.001G136500 Phaseolus vulgaris HOM05D004075 ORTHO05D004538 2.0e-25 121.3 245 38.0
FAN02G0713 Fragaria x ananassa HOM05D004075 ORTHO05D004538 2.6e-25 120.9 214 38.8
Glyma.03G139500 Glycine max HOM05D004075 ORTHO05D004538 2.6e-25 120.9 214 39.7
RcHm_v2.0_Chr3g0481111 Rosa chinensis HOM05D004075 ORTHO05D004538 3.4e-25 120.6 219 41.6
Zm00001eb402070 Zea mays HOM05D004075 ORTHO05D004538 3.4e-25 120.6 219 40.2
AT3G52110 Arabidopsis thaliana HOM05D004075 ORTHO05D004538 4.4e-25 120.2 196 41.3
Ca_08481_v3 Cicer arietinum L. HOM05D004075 ORTHO05D004538 4.4e-25 120.2 210 39.0
CANSAT80G1662 Cannabis sativa HOM05D004075 ORTHO05D004538 5.8e-25 119.8 189 39.7
FAN09G1122 Fragaria x ananassa HOM05D004075 ORTHO05D004538 7.5e-25 119.4 204 40.2
TPR.G32989 Trifolium pratense HOM05D004075 ORTHO05D004538 9.8e-25 119.0 225 40.0
AL5G32670 Arabidopsis lyrata HOM05D004075 ORTHO05D004538 1.3e-24 118.6 196 41.8
Medtr3g028600 Medicago truncatula HOM05D004075 ORTHO05D004538 1.3e-24 118.6 222 37.8
CiPaw.10G031200 Carya illinoinensis HOM05D004075 ORTHO05D004538 2.2e-24 117.9 215 38.1
Potri.006G054900 Populus trichocarpa HOM05D004075 ORTHO05D004538 2.9e-24 117.5 244 35.7
BcaNung06093 Brassica carinata HOM05D004075 ORTHO05D004538 4.9e-24 116.7 197 39.6
C08p27380 Brassica napus HOM05D004075 ORTHO05D004538 4.9e-24 116.7 197 39.6
CARHR161820 Cardamine hirsuta HOM05D004075 ORTHO05D004538 4.9e-24 116.7 191 40.3
Sp5g10180 Schrenkiella parvula HOM05D004075 ORTHO05D004538 4.9e-24 116.7 198 40.9
CDE10G0025 Ceratophyllum demersum HOM05D004075 ORTHO05D004538 6.4e-24 116.3 192 41.1
unitig_578.g16697 Utricularia gibba HOM05D004075 ORTHO05D004538 6.4e-24 116.3 202 37.1
BolC8t50355H Brassica oleracea HOM05D004075 ORTHO05D004538 8.3e-24 115.9 192 39.1
Carub.0005s1844 Capsella rubella HOM05D004075 ORTHO05D004538 1.1e-23 115.5 237 37.6
Ca_26459_v3 Cicer arietinum L. HOM05D004075 ORTHO05D004538 1.4e-23 115.2 240 37.5
Haze_19908 Corylus avellana HOM05D004075 ORTHO05D004538 1.4e-23 115.2 234 36.8
A09p45170 Brassica napus HOM05D004075 ORTHO05D004538 1.9e-23 114.8 197 40.1
BraA09t39980Z Brassica rapa HOM05D004075 ORTHO05D004538 1.9e-23 114.8 197 40.1
Os03g0174200 Oryza sativa ssp. japonica HOM05D004075 ORTHO05D004538 1.9e-23 114.8 254 37.8
A04p07270 Brassica napus HOM05D004075 ORTHO05D004538 2.4e-23 114.4 192 40.1
BraA04t16422Z Brassica rapa HOM05D004075 ORTHO05D004538 2.4e-23 114.4 192 40.1
Medtr7g092270 Medicago truncatula HOM05D004075 ORTHO05D004538 2.4e-23 114.4 212 39.2
BcaB01g00440 Brassica carinata HOM05D004075 ORTHO05D004538 3.2e-23 114.0 233 38.2
Psat0s1894g0080 Pisum sativum HOM05D004075 ORTHO05D004538 7.0e-23 112.8 212 37.7
TPR.G3891 Trifolium pratense HOM05D004075 ORTHO05D004538 1.6e-22 111.7 248 35.9
Lj1g0004317 Lotus japonicus HOM05D004075 ORTHO05D004538 2.0e-22 111.3 245 35.9
Peaxi162Scf00337g00818 Petunia axillaris HOM05D004075 ORTHO05D004538 1.3e-21 108.6 200 40.5
EL10Ac2g04319 Beta vulgaris HOM05D004075 ORTHO05D004538 5.0e-21 106.7 192 39.1
ECA248G1140 Erigeron canadensis HOM05D004075 ORTHO05D004538 5.0e-21 106.7 210 36.2
Duzib268G0178 Durio zibethinus HOM05D004075 ORTHO05D004538 6.6e-21 106.3 238 35.3
Lsat_1_v5_gn_1_107340 Lactuca sativa HOM05D004075 ORTHO05D004538 6.6e-21 106.3 194 38.7
Aqoxy2G00118 Aquilegia oxysepala HOM05D004075 ORTHO05D004538 3.6e-19 100.5 252 34.9
Atru.chr1.1036 Acer truncatum HOM05D004075 ORTHO05D004538 1.4e-18 98.6 202 37.6
Ah.10g038860 Amaranthus hybridus HOM05D004075 ORTHO05D004538 1.3e-16 92.0 200 34.5
C04p40860 Brassica napus HOM05D004075 ORTHO05D004538 1.7e-16 91.7 226 32.7
SEGI_25355 Sequoiadendron giganteum HOM05D000006 ORTHO05D004538 2.2e-16 91.3 641 24.5
BcaC02g09281 Brassica carinata HOM05D004075 ORTHO05D004538 6.4e-16 89.7 226 33.6
BolC4t25672H Brassica oleracea HOM05D004075 ORTHO05D004538 6.4e-16 89.7 226 33.6
SEGI_33290 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 6.4e-16 89.7 179 36.3
Sabra16G0056300 Salix brachista HOM05D004075 ORTHO05D004538 8.3e-16 89.4 89 47.2
SEGI_06755 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 7.1e-15 86.3 131 41.2
SEGI_02901 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 1.6e-14 85.1 674 24.0
SEGI_00378 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 1.0e-13 82.4 240 33.3
VMungo1383G1333 Vigna mungo HOM05D004075 ORTHO05D004538 1.7e-08 65.1 50 58.0
Dinv00534 Davidia involucrata HOM05D004075 ORTHO05D004538 8.4e-08 62.8 48 60.4
CiPaw.13G003900 Carya illinoinensis HOM05D004075 ORTHO05D004538 2.1e-06 58.2 76 46.1
Migut.N01589 Erythranthe guttata HOM05D004075 ORTHO05D004538 6.0e-06 56.6 135 36.3


User provided reference genes

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