Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0605G327 Amborella trichopoda HOM05D006202 ORTHO05D008227 1.7e-235 818.9 400 100.0
MBI04_g33961_MAGBIO Magnolia biondii HOM05D006202 ORTHO05D008227 1.0e-176 623.6 375 80.5
Dinv43939 Davidia involucrata HOM05D006202 ORTHO05D008227 1.5e-172 609.8 403 75.2
Manes.10G152100 Manihot esculenta HOM05D006202 ORTHO05D008227 1.5e-172 609.8 397 76.3
PSO339G0702 Papaver somniferum HOM05D006202 ORTHO05D008227 1.5e-172 609.8 387 76.7
Nn2g15679 Nelumbo nucifera HOM05D006202 ORTHO05D008227 2.0e-172 609.4 397 76.1
PSO384G0467 Papaver somniferum HOM05D006202 ORTHO05D008227 2.0e-172 609.4 398 75.6
TAR369G0651 Trochodendron aralioides HOM05D006202 ORTHO05D008227 4.5e-172 608.2 351 83.8
Cpa.g.sc189.4 Carica papaya HOM05D006202 ORTHO05D008227 1.0e-171 607.1 350 82.6
Aqoxy1G00030 Aquilegia oxysepala HOM05D006202 ORTHO05D008227 1.9e-170 602.8 350 82.9
CiPaw.02G012300 Carya illinoinensis HOM05D006202 ORTHO05D008227 7.2e-170 600.9 353 80.5
QL04p001552 Quercus lobata HOM05D006202 ORTHO05D008227 2.1e-169 599.4 351 81.5
Cc02_g26930 Coffea canephora HOM05D006202 ORTHO05D008227 4.6e-169 598.2 382 76.7
Aa31LG5G5070 Aethionema arabicum HOM05D006202 ORTHO05D008227 7.9e-169 597.4 350 81.7
THA.LOC104815880 Tarenaya hassleriana HOM05D006202 ORTHO05D008227 1.0e-168 597.0 350 82.3
Actinidia21584 Actinidia chinensis HOM05D006202 ORTHO05D008227 1.8e-168 596.3 405 72.8
Cfa010710 Carpinus fangiana HOM05D006202 ORTHO05D008227 1.8e-168 596.3 350 81.4
Lj9C620G10 Lonicera japonica HOM05D006202 ORTHO05D008227 3.0e-168 595.5 348 82.2
Os12g0507000 Oryza sativa ssp. japonica HOM05D006202 ORTHO05D008227 5.1e-168 594.7 359 80.2
Prupe.1G561800 Prunus persica HOM05D006202 ORTHO05D008227 5.1e-168 594.7 374 76.5
TWI73G0821 Tripterygium wilfordii HOM05D006202 ORTHO05D008227 5.1e-168 594.7 348 81.6
vmacro21164 Vaccinium macrocarpon HOM05D006202 ORTHO05D008227 5.1e-168 594.7 348 82.5
Glyma.15G268400 Glycine max HOM05D006202 ORTHO05D008227 8.8e-168 594.0 403 72.0
Haze_03268 Corylus avellana HOM05D006202 ORTHO05D008227 1.5e-167 593.2 350 81.1
CSS0029964 Camellia sinensis var. sinensis HOM05D006202 ORTHO05D008227 4.3e-167 591.7 351 80.9
Potri.009G024100 Populus trichocarpa HOM05D006202 ORTHO05D008227 4.3e-167 591.7 350 82.3
GSVIVG01001357001 Vitis vinifera HOM05D006202 ORTHO05D008227 5.7e-167 591.3 378 78.0
FAN04G1730 Fragaria x ananassa HOM05D006202 ORTHO05D008227 3.7e-166 588.6 352 79.8
Lj3g0005275 Lotus japonicus HOM05D006202 ORTHO05D008227 3.7e-166 588.6 402 72.4
MD02G1319400 Malus domestica HOM05D006202 ORTHO05D008227 3.7e-166 588.6 379 75.5
RcHm_v2.0_Chr1g0313251 Rosa chinensis HOM05D006202 ORTHO05D008227 4.8e-166 588.2 358 77.9
arahy.Tifrunner.gnm1.ann1.Y9YBLC Arachis hypogaea HOM05D006202 ORTHO05D008227 1.1e-165 587.0 355 79.2
Nitab4.5_0010722g0010 Nicotiana tabacum HOM05D006202 ORTHO05D008227 1.1e-165 587.0 383 74.7
Rhsim03G0068600 Rhododendron simsii HOM05D006202 ORTHO05D008227 1.1e-165 587.0 367 78.5
FvH4_5g30330 Fragaria vesca HOM05D006202 ORTHO05D008227 1.8e-165 586.3 346 80.9
Nitab4.5_0000468g0040 Nicotiana tabacum HOM05D006202 ORTHO05D008227 2.4e-165 585.9 394 73.4
Sp4g14320 Schrenkiella parvula HOM05D006202 ORTHO05D008227 2.4e-165 585.9 376 74.7
Atru.chr11.2704 Acer truncatum HOM05D006202 ORTHO05D008227 4.1e-165 585.1 396 74.2
arahy.Tifrunner.gnm1.ann1.03K86Q Arachis hypogaea HOM05D006202 ORTHO05D008227 4.1e-165 585.1 355 78.6
MSTRG.28100 Avicennia marina HOM05D006202 ORTHO05D008227 4.1e-165 585.1 361 78.7
ClCG09G003710 Citrullus lanatus HOM05D006202 ORTHO05D008227 5.3e-165 584.7 351 79.8
FAN18G2168 Fragaria x ananassa HOM05D006202 ORTHO05D008227 6.9e-165 584.3 346 80.6
SalBow5G5675 Salvia bowleyana HOM05D006202 ORTHO05D008227 9.1e-165 583.9 355 79.7
Sopen01g033340 Solanum pennellii HOM05D006202 ORTHO05D008227 9.1e-165 583.9 395 73.4
Os02g0258900 Oryza sativa ssp. japonica HOM05D006202 ORTHO05D008227 1.2e-164 583.6 350 79.7
AT2G31955 Arabidopsis thaliana HOM05D006202 ORTHO05D008227 1.5e-164 583.2 357 76.5
CAN.G129.48 Capsicum annuum HOM05D006202 ORTHO05D008227 1.5e-164 583.2 392 73.2
Lalb_Chr01g0015151 Lupinus albus HOM05D006202 ORTHO05D008227 1.5e-164 583.2 406 71.7
AL4G27290 Arabidopsis lyrata HOM05D006202 ORTHO05D008227 2.0e-164 582.8 375 73.9
FAN08G1924 Fragaria x ananassa HOM05D006202 ORTHO05D008227 2.6e-164 582.4 348 79.3
Carub.0004s1327 Capsella rubella HOM05D006202 ORTHO05D008227 3.4e-164 582.0 350 78.9
FAN13G0191 Fragaria x ananassa HOM05D006202 ORTHO05D008227 3.4e-164 582.0 352 79.3
Glyma.08G157800 Glycine max HOM05D006202 ORTHO05D008227 4.5e-164 581.6 375 74.4
Thhalv10016791m.g Eutrema salsugineum HOM05D006202 ORTHO05D008227 5.9e-164 581.3 330 82.7
PGSC0003DMG401028974 Solanum tuberosum HOM05D006202 ORTHO05D008227 5.9e-164 581.3 348 81.3
Oeu060701.1 Olea europaea HOM05D006202 ORTHO05D008227 7.7e-164 580.9 351 79.8
Solyc01g073730.4 Solanum lycopersicum HOM05D006202 ORTHO05D008227 7.7e-164 580.9 395 73.2
SGA_v2.0_scaffold5G03106 Striga asiatica HOM05D006202 ORTHO05D008227 1.0e-163 580.5 348 80.7
DCAR_001807 Daucus carota HOM05D006202 ORTHO05D008227 2.2e-163 579.3 348 80.7
Zm00001eb244230 Zea mays HOM05D006202 ORTHO05D008227 2.2e-163 579.3 354 79.9
BcaC01g05926 Brassica carinata HOM05D006202 ORTHO05D008227 3.8e-163 578.6 346 79.5
Sed0014986 Sechium edule HOM05D006202 ORTHO05D008227 5.0e-163 578.2 351 79.8
BraA03t11059Z Brassica rapa HOM05D006202 ORTHO05D008227 6.5e-163 577.8 346 79.5
Peaxi162Scf00402g00616 Petunia axillaris HOM05D006202 ORTHO05D008227 8.5e-163 577.4 347 80.1
Migut.I00539 Erythranthe guttata HOM05D006202 ORTHO05D008227 1.1e-162 577.0 355 78.0
arahy.Tifrunner.gnm1.ann1.YK6119 Arachis hypogaea HOM05D006202 ORTHO05D008227 1.4e-162 576.6 355 78.0
ECA234G4350 Erigeron canadensis HOM05D006202 ORTHO05D008227 1.4e-162 576.6 352 80.7
Sc10g0005310 Simmondsia chinensis HOM05D006202 ORTHO05D008227 2.5e-162 575.9 399 71.7
Eucgr.A00275 Eucalyptus grandis HOM05D006202 ORTHO05D008227 3.2e-162 575.5 351 79.8
Eucgr.A00079 Eucalyptus grandis HOM05D006202 ORTHO05D008227 5.5e-162 574.7 359 78.6
Lsat_1_v5_gn_4_46560 Lactuca sativa HOM05D006202 ORTHO05D008227 5.5e-162 574.7 359 78.6
TPR.G16148 Trifolium pratense HOM05D006202 ORTHO05D008227 5.5e-162 574.7 367 75.7
Ca_03201_v3 Cicer arietinum L. HOM05D006202 ORTHO05D008227 7.2e-162 574.3 358 76.8
Ciclev10031726m.g Citrus clementina HOM05D006202 ORTHO05D008227 2.1e-161 572.8 351 80.1
BolC3t14483H Brassica oleracea HOM05D006202 ORTHO05D008227 3.6e-161 572.0 347 79.0
Migut.B01400 Erythranthe guttata HOM05D006202 ORTHO05D008227 3.6e-161 572.0 351 78.3
Medtr2g061710 Medicago truncatula HOM05D006202 ORTHO05D008227 3.6e-161 572.0 366 76.0
Thecc.09G200100 Theobroma cacao HOM05D006202 ORTHO05D008227 6.1e-161 571.2 353 77.3
Phvul.005G042000 Phaseolus vulgaris HOM05D006202 ORTHO05D008227 1.0e-160 570.5 355 77.2
HanXRQChr16g0520351 Helianthus annuus HOM05D006202 ORTHO05D008227 3.0e-160 568.9 360 78.1
VMungo1080G0924 Vigna mungo HOM05D006202 ORTHO05D008227 3.9e-160 568.5 356 76.4
AUR62036652 Chenopodium quinoa HOM05D006202 ORTHO05D008227 6.7e-160 567.8 359 76.9
Duzib168G0949 Durio zibethinus HOM05D006202 ORTHO05D008227 6.7e-160 567.8 358 76.8
COL.COLO4_07529 Corchorus olitorius HOM05D006202 ORTHO05D008227 1.5e-159 566.6 358 77.1
Ah.14g085700 Amaranthus hybridus HOM05D006202 ORTHO05D008227 9.7e-159 563.9 351 77.2
AUR62034625 Chenopodium quinoa HOM05D006202 ORTHO05D008227 1.7e-158 563.1 349 77.7
Phvul.005G041900 Phaseolus vulgaris HOM05D006202 ORTHO05D008227 1.4e-157 560.1 327 81.3
Sabra09G0015400 Salix brachista HOM05D006202 ORTHO05D008227 4.1e-157 558.5 404 70.5
Gorai.004G013400 Gossypium raimondii HOM05D006202 ORTHO05D008227 5.3e-157 558.1 330 79.7
Gohir.D08G018900 Gossypium hirsutum HOM05D006202 ORTHO05D008227 5.9e-156 554.7 330 79.1
HPP92_023784 Vanilla planifolia HOM05D006202 ORTHO05D008227 7.7e-156 554.3 377 73.2
Gohir.A08G008900 Gossypium hirsutum HOM05D006202 ORTHO05D008227 2.2e-155 552.7 330 78.5
CsaV3_7G031490 Cucumis sativus L. HOM05D006202 ORTHO05D008227 1.1e-154 550.4 319 82.1
unitig_749.g13486 Utricularia gibba HOM05D006202 ORTHO05D008227 7.2e-154 547.7 351 75.5
EL10Ac3g06182 Beta vulgaris HOM05D006202 ORTHO05D008227 6.1e-153 544.7 349 75.1
CANSAT80G0703 Cannabis sativa HOM05D006202 ORTHO05D008227 4.0e-152 542.0 367 71.4
A03p17940 Brassica napus HOM05D000200 ORTHO05D000262 6.5e-147 524.6 339 75.2
C03p21020 Brassica napus HOM05D000200 ORTHO05D000262 1.5e-146 523.5 339 74.9
SEGI_40145 Sequoiadendron giganteum HOM05D006202 ORTHO05D008227 7.2e-146 521.2 363 70.2
Mapoly0045s0149 Marchantia polymorpha HOM05D006202 ORTHO05D008227 1.2e-145 520.4 383 67.1
Pp3c5_22480 Physcomitrium patens HOM05D006202 ORTHO05D008227 2.7e-145 519.2 330 74.5
SMO361G0213 Selaginella moellendorffii HOM05D006202 ORTHO05D008227 2.6e-143 512.7 354 70.1
CDE06G1615 Ceratophyllum demersum HOM05D006202 ORTHO05D008227 2.2e-139 499.6 332 73.2
CBR_g36677 Chara braunii HOM05D006202 ORTHO05D008227 1.4e-136 490.3 371 63.6
Actinidia15848 Actinidia chinensis HOM05D006202 ORTHO05D008227 1.5e-135 486.9 403 63.8
Potri.001G230604 Populus trichocarpa HOM05D006202 ORTHO05D008227 5.2e-128 461.8 350 68.9
arahy.Tifrunner.gnm1.ann1.JS3HL2 Arachis hypogaea HOM05D006202 ORTHO05D008227 2.0e-127 459.9 355 65.9
MCO15G349 Micromonas commoda HOM05D006202 ORTHO05D008227 5.6e-122 441.8 335 63.3
AL80U10060 Arabidopsis lyrata HOM05D006202 ORTHO05D008227 2.1e-121 439.9 375 60.3
Cre13.g602901 Chlamydomonas reinhardtii HOM05D006202 ORTHO05D008227 8.1e-113 411.4 376 56.9
TAR369G1105 Trochodendron aralioides HOM05D006202 ORTHO05D008227 1.7e-110 403.7 244 80.3
PRCOL_00002201 Prasinoderma coloniale HOM05D006202 ORTHO05D008227 9.2e-109 397.9 328 59.5
MELO3C023505.2 Cucumis melo HOM05D006202 ORTHO05D008227 7.3e-106 388.3 238 78.2
Pp3c6_6420 Physcomitrium patens HOM05D006202 ORTHO05D008227 7.3e-106 388.3 327 59.9
CARHR125690 Cardamine hirsuta HOM05D006202 ORTHO05D008227 3.6e-105 386.0 245 74.7
Hund12940 Selenicereus undatus HOM05D006202 ORTHO05D008227 1.8e-104 383.6 253 73.9
Psat1g128920 Pisum sativum HOM05D006202 ORTHO05D008227 3.7e-102 375.9 278 68.0
Cfa022704 Carpinus fangiana HOM05D006202 ORTHO05D008227 1.1e-98 364.4 377 49.3
Haze_27006 Corylus avellana HOM05D006202 ORTHO05D008699 2.4e-72 276.9 287 47.0
SHI12251 Sapria himalayana HOM05D006202 ORTHO05D008227 6.7e-67 258.8 168 74.4
SHI12244 Sapria himalayana HOM05D006202 ORTHO05D008227 8.5e-62 241.9 190 65.3
AagrBONN_evm.TU.Sc2ySwM_344.4902 Anthoceros agrestis HOM05D006202 ORTHO05D008227 1.6e-60 237.7 162 70.4
ATR0605G108 Amborella trichopoda HOM05D006202 ORTHO05D008227 5.3e-56 222.6 131 86.3
SHI12245 Sapria himalayana HOM05D006202 ORTHO05D008227 1.1e-50 204.9 156 66.0
SHI34064 Sapria himalayana HOM05D006202 ORTHO05D367267 4.5e-15 86.7 59 74.6
A05p13580 Brassica napus HOM05D006202 ORTHO05D033532 1.5e-13 81.6 90 51.1
BraA05t20295Z Brassica rapa HOM05D006202 ORTHO05D033532 1.5e-13 81.6 90 51.1
TAR623G0116 Trochodendron aralioides HOM05D006202 ORTHO05D414173 9.2e-08 62.4 35 80.0


User provided reference genes

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