Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0605G314 Amborella trichopoda HOM05D005298 ORTHO05D023441 4.5e-67 257.7 120 100.0
ATR0457G001 Amborella trichopoda HOM05D005298 ORTHO05D023441 7.6e-59 230.3 120 88.3
ATR0757G088 Amborella trichopoda HOM05D005298 ORTHO05D023441 1.2e-43 179.9 92 92.4
ATR0796G315 Amborella trichopoda HOM05D005298 ORTHO05D008015 3.7e-37 158.3 95 78.9
MBI18_g28901_MAGBIO Magnolia biondii HOM05D005298 ORTHO05D008015 8.2e-29 130.6 109 56.9
Nn3g21868 Nelumbo nucifera HOM05D005298 ORTHO05D008015 3.2e-25 118.6 108 53.7
TAR362G0426 Trochodendron aralioides HOM05D005298 ORTHO05D008015 2.1e-24 115.9 88 58.0
Aqoxy2G02567 Aquilegia oxysepala HOM05D005298 ORTHO05D008015 8.8e-23 110.5 108 50.9
Medtr4g123670 Medicago truncatula HOM05D005298 ORTHO05D008015 8.8e-23 110.5 100 51.0
Rhsim04G0246500 Rhododendron simsii HOM05D005298 ORTHO05D008015 8.8e-23 110.5 88 55.7
CSS0017624 Camellia sinensis var. sinensis HOM05D005298 ORTHO05D008015 1.5e-22 109.8 92 53.3
CSS0040584 Camellia sinensis var. sinensis HOM05D005298 ORTHO05D008015 1.5e-22 109.8 92 53.3
Sabra10G0117500 Salix brachista HOM05D005298 ORTHO05D008015 2.0e-22 109.4 92 53.3
Ciclev10004217m.g Citrus clementina HOM05D005298 ORTHO05D008015 3.3e-22 108.6 88 54.5
FAN07G1807 Fragaria x ananassa HOM05D005298 ORTHO05D008015 3.3e-22 108.6 92 51.1
FAN17G0175 Fragaria x ananassa HOM05D005298 ORTHO05D008015 4.4e-22 108.2 92 50.0
Thecc.04G309800 Theobroma cacao HOM05D005298 ORTHO05D008015 5.7e-22 107.8 100 51.0
Psat0ss1196g0600 Pisum sativum HOM05D005298 ORTHO05D008015 7.5e-22 107.5 100 50.0
Prupe.1G109100 Prunus persica HOM05D005298 ORTHO05D008015 1.3e-21 106.7 89 52.8
Hma1.2p1_0013F.1_g008000 Hydrangea macrophylla HOM05D005298 ORTHO05D008015 1.7e-21 106.3 93 52.7
ClCG06G004280 Citrullus lanatus HOM05D005298 ORTHO05D008015 2.2e-21 105.9 100 48.0
CsaV3_6G000130 Cucumis sativus L. HOM05D005298 ORTHO05D008015 2.2e-21 105.9 108 47.2
MD15G1386700 Malus domestica HOM05D005298 ORTHO05D008015 2.2e-21 105.9 103 46.6
MD16G1139700 Malus domestica HOM05D005298 ORTHO05D008015 2.2e-21 105.9 103 46.6
Lj3A839G57 Lonicera japonica HOM05D005298 ORTHO05D008015 2.8e-21 105.5 88 54.5
Ca_21388_v3 Cicer arietinum L. HOM05D005298 ORTHO05D008015 3.7e-21 105.1 88 52.3
RcHm_v2.0_Chr4g0426661 Rosa chinensis HOM05D005298 ORTHO05D008015 3.7e-21 105.1 92 50.0
FvH4_4g21110 Fragaria vesca HOM05D005298 ORTHO05D008015 4.8e-21 104.8 92 48.9
Duzib151G1192 Durio zibethinus HOM05D005298 ORTHO05D008015 6.3e-21 104.4 89 53.9
Potri.010G152700 Populus trichocarpa HOM05D005298 ORTHO05D008015 6.3e-21 104.4 92 51.1
COL.COLO4_34539 Corchorus olitorius HOM05D005298 ORTHO05D008015 8.3e-21 104.0 92 51.1
Dinv29532 Davidia involucrata HOM05D005298 ORTHO05D008015 8.3e-21 104.0 88 56.8
Haze_00801 Corylus avellana HOM05D005298 ORTHO05D008015 1.1e-20 103.6 88 53.4
PSO210G1072 Papaver somniferum HOM05D005298 ORTHO05D008015 1.4e-20 103.2 89 53.9
Phvul.003G119400 Phaseolus vulgaris HOM05D005298 ORTHO05D008015 1.4e-20 103.2 97 50.5
Gohir.D02G063000 Gossypium hirsutum HOM05D005298 ORTHO05D008015 1.8e-20 102.8 88 52.3
Gorai.005G070900 Gossypium raimondii HOM05D005298 ORTHO05D008015 1.8e-20 102.8 88 52.3
Glyma.07G233500 Glycine max HOM05D005298 ORTHO05D008015 2.4e-20 102.4 88 53.4
Cfa015712 Carpinus fangiana HOM05D005298 ORTHO05D008015 3.1e-20 102.1 88 52.3
CiPaw.01G131300 Carya illinoinensis HOM05D005298 ORTHO05D008015 3.1e-20 102.1 88 51.1
Lj4g0022536 Lotus japonicus HOM05D005298 ORTHO05D008015 4.1e-20 101.7 88 53.4
ATR0049G027 Amborella trichopoda HOM05D005298 ORTHO05D023441 5.3e-20 101.3 67 76.1
vmacro07993 Vaccinium macrocarpon HOM05D005298 ORTHO05D008015 5.3e-20 101.3 88 52.3
arahy.Tifrunner.gnm1.ann1.WSVI3W Arachis hypogaea HOM05D005298 ORTHO05D008015 7.0e-20 100.9 88 52.3
Lalb_Chr07g0181831 Lupinus albus HOM05D005298 ORTHO05D008015 9.1e-20 100.5 100 48.0
QL06p013696 Quercus lobata HOM05D005298 ORTHO05D008015 1.2e-19 100.1 88 52.3
Cpa.g.sc146.46 Carica papaya HOM05D005298 ORTHO05D008015 1.6e-19 99.8 106 47.2
MELO3C021240.2 Cucumis melo HOM05D005298 ORTHO05D008015 2.0e-19 99.4 108 44.4
Glyma.17G038500 Glycine max HOM05D005298 ORTHO05D008015 2.0e-19 99.4 88 52.3
Sed0008409 Sechium edule HOM05D005298 ORTHO05D008015 2.0e-19 99.4 108 45.4
TPR.G12648 Trifolium pratense HOM05D005298 ORTHO05D008015 2.0e-19 99.4 100 45.0
arahy.Tifrunner.gnm1.ann1.68EF5E Arachis hypogaea HOM05D005298 ORTHO05D008015 2.7e-19 99.0 88 51.1
Manes.15G003700 Manihot esculenta HOM05D005298 ORTHO05D008015 2.7e-19 99.0 88 52.3
Atru.chr4.3122 Acer truncatum HOM05D005298 ORTHO05D008015 4.5e-19 98.2 100 47.0
Gohir.A02G057201 Gossypium hirsutum HOM05D005298 ORTHO05D008015 4.5e-19 98.2 88 50.0
ATR0820G007 Amborella trichopoda HOM05D005298 ORTHO05D023441 3.8e-18 95.1 67 74.6
TWI09G0537 Tripterygium wilfordii HOM05D005298 ORTHO05D008015 3.8e-18 95.1 80 55.0
VMungo1215G2609 Vigna mungo HOM05D005298 ORTHO05D008015 3.8e-18 95.1 88 47.7
CANSAT78G1118 Cannabis sativa HOM05D005298 ORTHO05D008015 8.5e-18 94.0 88 47.7
GSVIVG01017664001 Vitis vinifera HOM05D005298 ORTHO05D008015 8.5e-18 94.0 88 50.0
Peaxi162Scf00126g10123 Petunia axillaris HOM05D005298 ORTHO05D008015 1.1e-17 93.6 89 50.6
CAN.G14.34 Capsicum annuum HOM05D005298 ORTHO05D008015 2.5e-17 92.4 86 51.2
PGR004G2663 Punica granatum HOM05D005298 ORTHO05D008015 2.1e-16 89.4 106 44.3
PGSC0003DMG400012034 Solanum tuberosum HOM05D005298 ORTHO05D008015 2.1e-16 89.4 86 48.8
Sopen01g022220 Solanum pennellii HOM05D005298 ORTHO05D008015 6.1e-16 87.8 86 48.8
Nitab4.5_0000992g0090 Nicotiana tabacum HOM05D005298 ORTHO05D008015 8.0e-16 87.4 89 48.3
BcaC05g28796 Brassica carinata HOM05D005298 ORTHO05D008015 1.0e-15 87.0 89 47.2
BolC5t33645H Brassica oleracea HOM05D005298 ORTHO05D008015 1.0e-15 87.0 89 47.2
A05p32420 Brassica napus HOM05D005298 ORTHO05D008015 1.4e-15 86.7 89 47.2
C05p49050 Brassica napus HOM05D005298 ORTHO05D008015 1.4e-15 86.7 89 47.2
BraA05t22069Z Brassica rapa HOM05D005298 ORTHO05D008015 1.4e-15 86.7 89 47.2
Solyc01g057520.4 Solanum lycopersicum HOM05D005298 ORTHO05D008015 1.4e-15 86.7 86 48.8
SEGI_25654 Sequoiadendron giganteum HOM05D005298 ORTHO05D008015 3.0e-15 85.5 82 47.6
Nitab4.5_0000169g0140 Nicotiana tabacum HOM05D005298 ORTHO05D008015 4.0e-15 85.1 89 47.2
DCAR_002539 Daucus carota HOM05D005298 ORTHO05D008015 6.8e-15 84.3 88 44.3
Eucgr.H04107 Eucalyptus grandis HOM05D005298 ORTHO05D008015 8.8e-15 84.0 98 45.9
EL10Ac3g06277 Beta vulgaris HOM05D005298 ORTHO05D008015 1.2e-14 83.6 103 41.7
Sp3g15510 Schrenkiella parvula HOM05D005298 ORTHO05D008015 1.2e-14 83.6 89 47.2
Oeu020287.1 Olea europaea HOM05D005298 ORTHO05D008015 1.5e-14 83.2 89 48.3
CARHR092650 Cardamine hirsuta HOM05D005298 ORTHO05D008015 7.5e-14 80.9 89 44.9
Thhalv10019950m.g Eutrema salsugineum HOM05D005298 ORTHO05D008015 7.5e-14 80.9 89 44.9
Aa31LG8G4260 Aethionema arabicum HOM05D005298 ORTHO05D008015 1.3e-13 80.1 101 41.6
AL3G30390 Arabidopsis lyrata HOM05D005298 ORTHO05D008015 1.7e-13 79.7 89 44.9
AT3G17340 Arabidopsis thaliana HOM05D005298 ORTHO05D008015 2.2e-13 79.3 89 44.9
Carub.0003s1705 Capsella rubella HOM05D005298 ORTHO05D008015 2.8e-13 79.0 88 45.5
Pp3c27_6680 Physcomitrium patens HOM05D005298 ORTHO05D008015 1.5e-09 66.6 85 40.0
Mapoly0002s0222 Marchantia polymorpha HOM05D005298 ORTHO05D008015 5.5e-09 64.7 83 38.6


User provided reference genes

Program Settings