Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0605G309 Amborella trichopoda HOM05D003815 ORTHO05D004580 2.1e-163 578.9 289 100.0
TAR629G1246 Trochodendron aralioides HOM05D003815 ORTHO05D004580 1.1e-135 486.9 295 83.4
Nn1g06558 Nelumbo nucifera HOM05D003815 ORTHO05D004580 2.4e-135 485.7 297 83.2
Dinv04311 Davidia involucrata HOM05D003815 ORTHO05D004580 3.2e-135 485.3 298 81.9
MBI07_g32649_MAGBIO Magnolia biondii HOM05D003815 ORTHO05D004580 5.4e-135 484.6 305 81.6
GSVIVG01014351001 Vitis vinifera HOM05D003815 ORTHO05D004580 6.0e-134 481.1 298 80.2
DCAR_014380 Daucus carota HOM05D003815 ORTHO05D004580 7.8e-134 480.7 285 82.8
Aqoxy1G02432 Aquilegia oxysepala HOM05D003815 ORTHO05D004580 1.0e-133 480.3 282 84.0
Gohir.A04G029700 Gossypium hirsutum HOM05D003815 ORTHO05D004580 1.3e-133 479.9 291 80.8
Potri.011G120100 Populus trichocarpa HOM05D003815 ORTHO05D004580 1.3e-133 479.9 288 82.3
Nn1g04083 Nelumbo nucifera HOM05D003815 ORTHO05D004580 2.3e-133 479.2 296 82.1
AT1G53000 Arabidopsis thaliana HOM05D003815 ORTHO05D004580 1.9e-132 476.1 291 80.8
Sabra11G0104500 Salix brachista HOM05D003815 ORTHO05D004580 4.3e-132 474.9 288 80.6
Sp1g39560 Schrenkiella parvula HOM05D003815 ORTHO05D004580 4.3e-132 474.9 294 81.0
Thecc.07G083700 Theobroma cacao HOM05D003815 ORTHO05D004580 5.6e-132 474.6 282 82.6
AL1G61340 Arabidopsis lyrata HOM05D003815 ORTHO05D004580 7.3e-132 474.2 294 80.6
Thhalv10011698m.g Eutrema salsugineum HOM05D003815 ORTHO05D004580 7.3e-132 474.2 292 80.8
Ciclev10009061m.g Citrus clementina HOM05D003815 ORTHO05D004580 9.5e-132 473.8 287 82.2
CSS0007181 Camellia sinensis var. sinensis HOM05D003815 ORTHO05D004580 1.2e-131 473.4 285 81.8
CSS0031480 Camellia sinensis var. sinensis HOM05D003815 ORTHO05D004580 1.2e-131 473.4 285 81.8
CARHR043220 Cardamine hirsuta HOM05D003815 ORTHO05D004580 1.2e-131 473.4 280 82.9
Eucgr.F01118 Eucalyptus grandis HOM05D003815 ORTHO05D004580 1.2e-131 473.4 282 83.0
BcaB02g10966 Brassica carinata HOM05D003815 ORTHO05D004580 2.8e-131 472.2 288 80.6
A08p01870 Brassica napus HOM05D003815 ORTHO05D004580 2.8e-131 472.2 285 82.1
BraA08t32239Z Brassica rapa HOM05D003815 ORTHO05D004580 2.8e-131 472.2 280 83.2
Gorai.009G389800 Gossypium raimondii HOM05D003815 ORTHO05D004580 3.6e-131 471.9 297 79.1
Sabra16G0263000 Salix brachista HOM05D003815 ORTHO05D004580 3.6e-131 471.9 282 82.6
BcaC01g01350 Brassica carinata HOM05D003815 ORTHO05D004580 4.7e-131 471.5 278 83.5
A05p18730 Brassica napus HOM05D003815 ORTHO05D004580 4.7e-131 471.5 291 80.1
C03p90950 Brassica napus HOM05D003815 ORTHO05D004580 4.7e-131 471.5 278 83.5
BolC3t21419H Brassica oleracea HOM05D003815 ORTHO05D004580 4.7e-131 471.5 278 83.5
Gohir.D05G357300 Gossypium hirsutum HOM05D003815 ORTHO05D004580 6.2e-131 471.1 297 79.1
Manes.03G110800 Manihot esculenta HOM05D003815 ORTHO05D004580 6.2e-131 471.1 280 82.9
TWI38G0676 Tripterygium wilfordii HOM05D003815 ORTHO05D004580 6.2e-131 471.1 282 82.6
Carub.0001s4215 Capsella rubella HOM05D003815 ORTHO05D004580 8.1e-131 470.7 293 80.2
vmacro11847 Vaccinium macrocarpon HOM05D003815 ORTHO05D004580 8.1e-131 470.7 282 81.9
QL08p021520 Quercus lobata HOM05D003815 ORTHO05D004580 1.1e-130 470.3 279 83.2
PGSC0003DMG400025035 Solanum tuberosum HOM05D003815 ORTHO05D004580 1.1e-130 470.3 280 82.5
TWI38G0767 Tripterygium wilfordii HOM05D003815 ORTHO05D004580 1.1e-130 470.3 280 83.9
Sc07g0002580 Simmondsia chinensis HOM05D003815 ORTHO05D004580 1.4e-130 469.9 278 82.7
PSO541G6182 Papaver somniferum HOM05D003815 ORTHO05D004580 2.4e-130 469.2 280 82.9
QL05p086088 Quercus lobata HOM05D003815 ORTHO05D004580 3.1e-130 468.8 279 83.2
BcaB04g17128 Brassica carinata HOM05D003815 ORTHO05D004580 4.0e-130 468.4 285 81.1
Phvul.011G157900 Phaseolus vulgaris HOM05D003815 ORTHO05D004580 6.8e-130 467.6 282 82.6
Sopen10g002890 Solanum pennellii HOM05D003815 ORTHO05D004580 1.2e-129 466.8 295 79.0
SGA_v2.0_scaffold73G24269 Striga asiatica HOM05D003815 ORTHO05D004580 1.2e-129 466.8 273 82.1
Nitab4.5_0001551g0080 Nicotiana tabacum HOM05D003815 ORTHO05D004580 1.5e-129 466.5 280 81.8
Solyc10g006980.3 Solanum lycopersicum HOM05D003815 ORTHO05D004580 1.5e-129 466.5 297 78.5
Cfa020596 Carpinus fangiana HOM05D003815 ORTHO05D004580 3.4e-129 465.3 282 82.3
Glyma.12G151500 Glycine max HOM05D003815 ORTHO05D004580 3.4e-129 465.3 282 82.6
PSO675G7971 Papaver somniferum HOM05D003815 ORTHO05D004580 3.4e-129 465.3 280 82.1
Potri.001G400900 Populus trichocarpa HOM05D003815 ORTHO05D004580 3.4e-129 465.3 291 79.4
Glyma.06G245100 Glycine max HOM05D003815 ORTHO05D004580 4.4e-129 464.9 282 83.0
Peaxi162Scf00027g02616 Petunia axillaris HOM05D003815 ORTHO05D004580 4.4e-129 464.9 295 79.3
Atru.chr2.2652 Acer truncatum HOM05D003815 ORTHO05D004580 5.8e-129 464.5 290 81.0
THA.LOC104818073 Tarenaya hassleriana HOM05D003815 ORTHO05D004580 7.6e-129 464.2 296 77.7
Nitab4.5_0003688g0100 Nicotiana tabacum HOM05D003815 ORTHO05D004580 9.9e-129 463.8 279 81.7
ECA238G0528 Erigeron canadensis HOM05D003815 ORTHO05D004580 1.3e-128 463.4 282 81.6
Lalb_Chr03g0030621 Lupinus albus HOM05D003815 ORTHO05D004580 1.3e-128 463.4 282 80.9
PGR083G0800 Punica granatum HOM05D003815 ORTHO05D004580 1.7e-128 463.0 289 79.6
TPR.G454 Trifolium pratense HOM05D003815 ORTHO05D004580 2.9e-128 462.2 281 81.5
CDE10G1101 Ceratophyllum demersum HOM05D003815 ORTHO05D004580 3.8e-128 461.8 288 80.2
Psat5g229040 Pisum sativum HOM05D003815 ORTHO05D004580 3.8e-128 461.8 280 81.4
Nitab4.5_0002383g0120 Nicotiana tabacum HOM05D003815 ORTHO05D004580 6.4e-128 461.1 280 80.7
Aa31LG10G2090 Aethionema arabicum HOM05D003815 ORTHO05D004580 8.4e-128 460.7 294 78.6
C06p14350 Brassica napus HOM05D003815 ORTHO05D004580 8.4e-128 460.7 288 80.2
CAN.G162.63 Capsicum annuum HOM05D003815 ORTHO05D004580 8.4e-128 460.7 280 81.1
Lj3g0026961 Lotus japonicus HOM05D003815 ORTHO05D004580 8.4e-128 460.7 280 80.7
BraA05t20769Z Brassica rapa HOM05D003815 ORTHO05D004580 1.4e-127 459.9 289 78.9
Migut.M00813 Erythranthe guttata HOM05D003815 ORTHO05D004580 1.4e-127 459.9 280 80.0
FAN16G0735 Fragaria x ananassa HOM05D003815 ORTHO05D004580 1.4e-127 459.9 282 80.9
Duzib170G0119 Durio zibethinus HOM05D003815 ORTHO05D004580 1.9e-127 459.5 296 77.7
MSTRG.15225 Avicennia marina HOM05D003815 ORTHO05D004580 2.4e-127 459.1 289 77.9
PGR004G1265 Punica granatum HOM05D003815 ORTHO05D004580 2.4e-127 459.1 283 79.9
MD03G1226400 Malus domestica HOM05D003815 ORTHO05D004580 4.2e-127 458.4 291 78.7
SEGI_36185 Sequoiadendron giganteum HOM05D003815 ORTHO05D004580 4.2e-127 458.4 286 81.1
Lj3g0002488 Lotus japonicus HOM05D003815 ORTHO05D004580 5.4e-127 458.0 282 80.5
RcHm_v2.0_Chr5g0033991 Rosa chinensis HOM05D003815 ORTHO05D004580 5.4e-127 458.0 289 78.5
Oeu005415.1 Olea europaea HOM05D003815 ORTHO05D004580 7.1e-127 457.6 284 79.6
Nitab4.5_0000207g0160 Nicotiana tabacum HOM05D003815 ORTHO05D004580 9.2e-127 457.2 294 77.6
Actinidia01882 Actinidia chinensis HOM05D003815 ORTHO05D004580 1.2e-126 456.8 287 80.8
FAN11G0414 Fragaria x ananassa HOM05D003815 ORTHO05D004580 1.2e-126 456.8 282 80.1
MELO3C016515.2 Cucumis melo HOM05D003815 ORTHO05D004580 1.6e-126 456.4 298 76.5
Medtr1g057850 Medicago truncatula HOM05D003815 ORTHO05D004580 1.6e-126 456.4 281 80.4
GSVIVG01005203001 Vitis vinifera HOM05D003815 ORTHO05D004580 1.6e-126 456.4 278 81.7
Prupe.4G183000 Prunus persica HOM05D003815 ORTHO05D004580 2.1e-126 456.1 282 80.1
Cc05_g12120 Coffea canephora HOM05D003815 ORTHO05D004580 2.7e-126 455.7 281 80.1
COL.COLO4_09397 Corchorus olitorius HOM05D003815 ORTHO05D004580 2.7e-126 455.7 270 83.7
HanXRQChr11g0328431 Helianthus annuus HOM05D003815 ORTHO05D004580 7.8e-126 454.1 295 77.6
Hund02213 Selenicereus undatus HOM05D003815 ORTHO05D004580 7.8e-126 454.1 294 77.2
CiPaw.09G059900 Carya illinoinensis HOM05D003815 ORTHO05D004580 1.0e-125 453.8 281 79.7
QL05p040244 Quercus lobata HOM05D003815 ORTHO05D004580 1.3e-125 453.4 280 80.7
Cfa000456 Carpinus fangiana HOM05D003815 ORTHO05D004580 1.7e-125 453.0 281 80.8
CsaV3_3G006290 Cucumis sativus L. HOM05D003815 ORTHO05D004580 2.3e-125 452.6 298 75.2
FAN21G2274 Fragaria x ananassa HOM05D003815 ORTHO05D004580 2.3e-125 452.6 278 80.6
Lalb_Chr01g0006511 Lupinus albus HOM05D003815 ORTHO05D004580 3.0e-125 452.2 294 76.5
MD11G1244700 Malus domestica HOM05D003815 ORTHO05D004580 3.9e-125 451.8 296 76.0
EL10Ac4g08152 Beta vulgaris HOM05D003815 ORTHO05D004580 6.6e-125 451.1 284 78.2
AUR62029379 Chenopodium quinoa HOM05D003815 ORTHO05D004580 6.6e-125 451.1 295 76.6
Lsat_1_v5_gn_7_105160 Lactuca sativa HOM05D003815 ORTHO05D004580 6.6e-125 451.1 280 78.9
CAN.G1110.56 Capsicum annuum HOM05D003815 ORTHO05D004580 1.9e-124 449.5 268 81.3
RcHm_v2.0_Chr5g0008351 Rosa chinensis HOM05D003815 ORTHO05D004580 2.5e-124 449.1 281 79.4
arahy.Tifrunner.gnm1.ann1.46T9HD Arachis hypogaea HOM05D003815 ORTHO05D004580 7.3e-124 447.6 282 78.0
Sed0012787 Sechium edule HOM05D003815 ORTHO05D004580 3.6e-123 445.3 295 75.6
Ah.06g184010 Amaranthus hybridus HOM05D003815 ORTHO05D004580 6.2e-123 444.5 282 77.7
Os05g0561500 Oryza sativa ssp. japonica HOM05D003815 ORTHO05D004580 8.1e-123 444.1 286 80.1
Lsat_1_v5_gn_7_21261 Lactuca sativa HOM05D003815 ORTHO05D004580 1.4e-122 443.4 269 80.7
Zm00001eb343610 Zea mays HOM05D003815 ORTHO05D004580 1.8e-122 443.0 286 78.0
HPP92_021319 Vanilla planifolia HOM05D003815 ORTHO05D004580 2.4e-122 442.6 300 75.7
unitig_899.g15563 Utricularia gibba HOM05D003815 ORTHO05D004580 4.0e-122 441.8 289 74.7
Lj8A54T73 Lonicera japonica HOM05D003815 ORTHO05D004580 1.6e-118 429.9 309 71.5
ClCG10G006920 Citrullus lanatus HOM05D003815 ORTHO05D004580 6.0e-118 427.9 311 71.1
Lj1A1206T62 Lonicera japonica HOM05D003815 ORTHO05D004580 6.0e-118 427.9 313 70.3
Peaxi162Scf00069g01341 Petunia axillaris HOM05D003815 ORTHO05D004580 1.0e-117 427.2 277 78.0
Duzib213G0989 Durio zibethinus HOM05D003815 ORTHO05D004580 6.6e-117 424.5 282 77.3
Actinidia09679 Actinidia chinensis HOM05D003815 ORTHO05D004580 1.1e-116 423.7 255 81.6
AUR62034260 Chenopodium quinoa HOM05D003815 ORTHO05D004580 1.9e-116 422.9 282 75.5
SalBow8G0761 Salvia bowleyana HOM05D003815 ORTHO05D004580 8.1e-115 417.5 265 78.1
arahy.Tifrunner.gnm1.ann1.NKF69P Arachis hypogaea HOM05D003815 ORTHO05D004580 4.0e-114 415.2 282 73.8
Prupe.4G047000 Prunus persica HOM05D003815 ORTHO05D004580 3.4e-113 412.1 254 80.7
Rhsim06G0197600 Rhododendron simsii HOM05D003815 ORTHO05D004580 7.6e-113 411.0 221 88.7
Haze_09417 Corylus avellana HOM05D003815 ORTHO05D004580 4.9e-112 408.3 364 61.8
CiPaw.11G168500 Carya illinoinensis HOM05D003815 ORTHO05D004580 5.4e-111 404.8 221 88.2
SGA_v2.0_scaffold34G13823 Striga asiatica HOM05D003815 ORTHO05D004580 9.3e-111 404.1 241 82.6
AagrBONN_evm.TU.Sc2ySwM_344.3202 Anthoceros agrestis HOM05D003815 ORTHO05D004580 3.5e-110 402.1 250 77.2
Haze_06461 Corylus avellana HOM05D003815 ORTHO05D004580 3.5e-110 402.1 280 73.9
FAN25G2093 Fragaria x ananassa HOM05D003815 ORTHO05D004580 3.0e-109 399.1 253 78.3
Pp3c7_2170 Physcomitrium patens HOM05D003815 ORTHO05D004580 3.0e-109 399.1 278 68.3
BcaC08g44025 Brassica carinata HOM05D003815 ORTHO05D004580 8.7e-109 397.5 282 72.7
Mapoly0026s0027 Marchantia polymorpha HOM05D003815 ORTHO05D004580 4.3e-108 395.2 281 69.4
Ca_12190_v3 Cicer arietinum L. HOM05D003815 ORTHO05D004580 1.3e-107 393.7 218 87.6
Ca_30578_v3 Cicer arietinum L. HOM05D003815 ORTHO05D004580 1.3e-107 393.7 218 87.6
SMO196G0043 Selaginella moellendorffii HOM05D003815 ORTHO05D004580 2.1e-107 392.9 251 75.3
CBR_g31446 Chara braunii HOM05D003815 ORTHO05D004580 1.9e-100 369.8 250 70.4
Dinv40557 Davidia involucrata HOM05D003815 ORTHO05D004580 7.4e-100 367.9 200 89.0
FvH4_3g20180 Fragaria vesca HOM05D003815 ORTHO05D004580 1.9e-92 343.2 214 79.0
Actinidia12813 Actinidia chinensis HOM05D003815 ORTHO05D004580 5.7e-92 341.7 290 63.8
PGSC0003DMG402012419 Solanum tuberosum HOM05D003815 ORTHO05D004580 1.6e-91 340.1 215 79.5
Cpa.g.sc80.53 Carica papaya HOM05D003815 ORTHO05D004580 1.0e-88 330.9 182 87.4
Duzib064G0003 Durio zibethinus HOM05D003815 ORTHO05D004580 2.5e-87 326.2 182 86.8
Oeu060549.1 Olea europaea HOM05D003815 ORTHO05D004580 3.9e-85 318.9 208 77.4
Eucgr.F01114 Eucalyptus grandis HOM05D003815 ORTHO05D004580 5.0e-80 302.0 221 74.2
Duzib064G0004 Durio zibethinus HOM05D003815 ORTHO05D004580 4.2e-79 298.9 174 83.3
PSO017G1411 Papaver somniferum HOM05D003815 ORTHO05D004580 1.7e-75 287.0 179 81.6
Lj3g0013472 Lotus japonicus HOM05D003815 ORTHO05D004580 1.5e-68 263.8 152 84.9
ATR0730G188 Amborella trichopoda HOM05D003815 ORTHO05D004580 2.0e-68 263.5 146 89.0
AagrBONN_evm.TU.Sc2ySwM_340.276 Anthoceros agrestis HOM05D003815 ORTHO05D004580 2.0e-68 263.5 194 69.6
BcaB07g33367 Brassica carinata HOM05D003815 ORTHO05D004580 4.8e-59 232.3 209 62.2
Pp3c11_23350 Physcomitrium patens HOM05D003815 ORTHO05D004580 1.6e-49 200.7 234 50.0
C07p00250 Brassica napus HOM05D003815 ORTHO05D004580 6.6e-48 195.3 119 75.6
Haze_06417 Corylus avellana HOM05D003815 ORTHO05D004580 1.8e-45 187.2 158 62.7
Haze_06421 Corylus avellana HOM05D003815 ORTHO05D004580 6.8e-45 185.3 136 70.6
Lj8A156T78 Lonicera japonica HOM05D003815 ORTHO05D004580 1.1e-42 177.9 178 57.9
BolC7t40476H Brassica oleracea HOM05D003815 ORTHO05D004580 1.3e-40 171.0 105 76.2
Hma1.2p1_0000F.1_g000160 Hydrangea macrophylla HOM05D003815 ORTHO05D004580 6.1e-38 162.2 86 88.4
BcaC06g36757 Brassica carinata HOM05D003815 ORTHO05D004580 2.2e-35 153.7 96 75.0
Actinidia05634 Actinidia chinensis HOM05D003815 ORTHO05D004580 2.1e-30 137.1 107 65.4
MCO07G610 Micromonas commoda HOM05D003815 ORTHO05D004580 6.2e-30 135.6 308 31.8
CBR_g29613 Chara braunii HOM05D003815 ORTHO05D004580 3.7e-27 126.3 170 42.9
Lj3g0015923 Lotus japonicus HOM05D003815 ORTHO05D004580 2.4e-26 123.6 196 43.4
BolC6t36186H Brassica oleracea HOM05D003815 ORTHO05D004580 1.6e-25 120.9 69 87.0
BcaC08g43686 Brassica carinata HOM05D003815 ORTHO05D004580 2.7e-25 120.2 66 89.4
ATR0730G237 Amborella trichopoda HOM05D003815 ORTHO05D004580 1.5e-23 114.4 71 83.1
BolC6t36614H Brassica oleracea HOM05D003815 ORTHO05D004580 1.6e-22 110.9 90 67.8
PSO017G7235 Papaver somniferum HOM05D003815 ORTHO05D004580 1.3e-16 91.3 53 81.1
Sopen05g017440 Solanum pennellii HOM05D003815 ORTHO05D004580 1.5e-15 87.8 158 38.0
Oeu044430.1 Olea europaea HOM05D003815 ORTHO05D004580 7.3e-15 85.5 79 57.0
Sopen05g018740 Solanum pennellii HOM05D000002 ORTHO05D000001 1.2e-14 84.7 85 51.8
BolC9t59438H Brassica oleracea HOM05D003815 ORTHO05D004580 1.5e-12 77.8 92 50.0
C09p66180 Brassica napus HOM05D003815 ORTHO05D004580 8.4e-11 72.0 103 42.7
Solyc04g079020.4 Solanum lycopersicum HOM05D003815 ORTHO05D004580 2.1e-09 67.4 110 37.3
Ca_12192_v3 Cicer arietinum L. HOM05D003815 ORTHO05D004580 3.5e-09 66.6 62 58.1
Ca_30580_v3 Cicer arietinum L. HOM05D003815 ORTHO05D004580 3.5e-09 66.6 62 58.1
Oeu026881.1 Olea europaea HOM05D001611 ORTHO05D001464 1.7e-08 64.3 57 54.4
Actinidia24031 Actinidia chinensis HOM05D003815 ORTHO05D004580 4.3e-07 59.7 34 76.5
COL.COLO4_31682 Corchorus olitorius HOM05D000007 ORTHO05D000017 4.3e-07 59.7 43 72.1
Actinidia16545 Actinidia chinensis HOM05D003815 ORTHO05D056144 9.6e-07 58.5 42 69.0
Solyc04g079010.1 Solanum lycopersicum HOM05D003815 ORTHO05D004580 6.2e-06 55.8 40 60.0


User provided reference genes

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