Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0605G298 Amborella trichopoda HOM05D005867 ORTHO05D007273 2.0e-106 389.0 185 100.0
Nn2g15416 Nelumbo nucifera HOM05D005867 ORTHO05D007273 2.0e-74 282.7 186 71.0
Cpa.g.sc84.80 Carica papaya HOM05D005867 ORTHO05D007273 2.9e-73 278.9 186 67.7
GSVIVG01025306001 Vitis vinifera HOM05D005867 ORTHO05D007273 3.8e-73 278.5 186 69.4
COL.COLO4_24845 Corchorus olitorius HOM05D005867 ORTHO05D007273 8.4e-73 277.3 186 68.3
Aa31LG3G14590 Aethionema arabicum HOM05D005867 ORTHO05D007273 1.1e-72 276.9 186 67.7
VMungo1080G0295 Vigna mungo HOM05D005867 ORTHO05D007273 1.1e-72 276.9 186 67.7
Thecc.09G227900 Theobroma cacao HOM05D005867 ORTHO05D007273 1.9e-72 276.2 186 68.8
Sed0004394 Sechium edule HOM05D005867 ORTHO05D007273 2.4e-72 275.8 186 66.7
AL6G23670 Arabidopsis lyrata HOM05D005867 ORTHO05D007273 3.2e-72 275.4 183 68.3
Gohir.A05G068300 Gossypium hirsutum HOM05D005867 ORTHO05D007273 3.2e-72 275.4 186 68.8
PSO384G4422 Papaver somniferum HOM05D005867 ORTHO05D007273 3.2e-72 275.4 180 68.9
Sp6g30910 Schrenkiella parvula HOM05D005867 ORTHO05D007273 3.2e-72 275.4 183 68.9
Carub.0006s1124 Capsella rubella HOM05D005867 ORTHO05D007273 4.2e-72 275.0 183 68.3
Thhalv10014788m.g Eutrema salsugineum HOM05D005867 ORTHO05D007273 4.2e-72 275.0 183 68.3
EL10Ac4g10299 Beta vulgaris HOM05D005867 ORTHO05D007273 5.4e-72 274.6 186 68.3
THA.LOC104804975 Tarenaya hassleriana HOM05D005867 ORTHO05D007273 7.1e-72 274.2 185 67.0
Manes.06G166900 Manihot esculenta HOM05D005867 ORTHO05D007273 9.3e-72 273.9 186 67.2
TAR636G0304 Trochodendron aralioides HOM05D005867 ORTHO05D007273 1.2e-71 273.5 186 69.4
BcaC04g19155 Brassica carinata HOM05D002203 ORTHO05D007273 1.6e-71 273.1 183 66.7
TAR633G2552 Trochodendron aralioides HOM05D005867 ORTHO05D007273 1.6e-71 273.1 185 68.6
AT5G13070 Arabidopsis thaliana HOM05D005867 ORTHO05D007273 2.1e-71 272.7 183 67.2
Ah.04g161870 Amaranthus hybridus HOM05D005867 ORTHO05D007273 2.7e-71 272.3 186 66.7
Ciclev10016610m.g Citrus clementina HOM05D005867 ORTHO05D007273 2.7e-71 272.3 186 68.3
Duzib168G0296 Durio zibethinus HOM05D005867 ORTHO05D007273 2.7e-71 272.3 186 68.3
Gorai.009G072300 Gossypium raimondii HOM05D005867 ORTHO05D007273 3.5e-71 271.9 186 67.2
Rhsim13G0224100 Rhododendron simsii HOM05D005867 ORTHO05D007273 3.5e-71 271.9 186 67.2
A02p01670 Brassica napus HOM05D005867 ORTHO05D007273 4.6e-71 271.6 183 66.1
BolC2t06533H Brassica oleracea HOM05D005867 ORTHO05D007273 4.6e-71 271.6 183 66.1
BraA02t05146Z Brassica rapa HOM05D005867 ORTHO05D007273 4.6e-71 271.6 183 66.1
PSO339G4569 Papaver somniferum HOM05D005867 ORTHO05D007273 4.6e-71 271.6 180 67.8
Ah.06g193630 Amaranthus hybridus HOM05D005867 ORTHO05D007273 6.0e-71 271.2 186 67.2
BcaNung01858 Brassica carinata HOM05D005867 ORTHO05D007273 6.0e-71 271.2 183 66.1
Gohir.D05G071300 Gossypium hirsutum HOM05D005867 ORTHO05D007273 6.0e-71 271.2 186 67.7
SHI29727 Sapria himalayana HOM05D005867 ORTHO05D007273 6.0e-71 271.2 186 66.7
Aqoxy1G00241 Aquilegia oxysepala HOM05D005867 ORTHO05D007273 7.9e-71 270.8 182 70.9
CARHR200400 Cardamine hirsuta HOM05D005867 ORTHO05D007273 7.9e-71 270.8 183 67.2
ClCG03G013300 Citrullus lanatus HOM05D005867 ORTHO05D007273 7.9e-71 270.8 185 66.5
Phvul.L010243 Phaseolus vulgaris HOM05D005867 ORTHO05D007273 7.9e-71 270.8 186 66.1
QL01p005337 Quercus lobata HOM05D005867 ORTHO05D007273 1.0e-70 270.4 185 66.5
C02p05880 Brassica napus HOM05D005867 ORTHO05D007273 1.3e-70 270.0 183 65.6
Sabra01G0013100 Salix brachista HOM05D005867 ORTHO05D007273 1.3e-70 270.0 186 65.6
MELO3C015200.2 Cucumis melo HOM05D005867 ORTHO05D007273 1.8e-70 269.6 186 66.1
BcaNung01174 Brassica carinata HOM05D005867 ORTHO05D007273 2.3e-70 269.2 183 65.6
Lsat_1_v5_gn_2_100781 Lactuca sativa HOM05D005867 ORTHO05D007273 2.3e-70 269.2 185 65.4
MBI17_g30524_MAGBIO Magnolia biondii HOM05D005867 ORTHO05D007273 3.9e-70 268.5 173 71.1
Atru.chr3.2589 Acer truncatum HOM05D005867 ORTHO05D007273 5.1e-70 268.1 186 66.7
AUR62000096 Chenopodium quinoa HOM05D005867 ORTHO05D007273 5.1e-70 268.1 186 65.1
AUR62019269 Chenopodium quinoa HOM05D005867 ORTHO05D007273 5.1e-70 268.1 186 65.1
CsaV3_1G042730 Cucumis sativus L. HOM05D005867 ORTHO05D007273 5.1e-70 268.1 186 65.6
Dinv36283 Davidia involucrata HOM05D005867 ORTHO05D007273 5.1e-70 268.1 186 66.1
Glyma.15G033100 Glycine max HOM05D005867 ORTHO05D007273 5.1e-70 268.1 186 65.1
PGR119G1510 Punica granatum HOM05D005867 ORTHO05D007273 5.1e-70 268.1 186 66.7
BraA10t44575Z Brassica rapa HOM05D005867 ORTHO05D007273 6.7e-70 267.7 183 65.0
ECA238G1591 Erigeron canadensis HOM05D005867 ORTHO05D007273 6.7e-70 267.7 185 64.9
Potri.001G018500 Populus trichocarpa HOM05D005867 ORTHO05D007273 6.7e-70 267.7 186 65.6
Actinidia16309 Actinidia chinensis HOM05D005867 ORTHO05D007273 1.1e-69 266.9 186 65.6
A10p25130 Brassica napus HOM05D005867 ORTHO05D007273 1.1e-69 266.9 183 65.0
CSS0048722 Camellia sinensis var. sinensis HOM05D005867 ORTHO05D007273 1.1e-69 266.9 181 67.4
Eucgr.J00791 Eucalyptus grandis HOM05D005867 ORTHO05D007273 1.5e-69 266.5 183 65.6
Cc01_g01980 Coffea canephora HOM05D005867 ORTHO05D007273 1.9e-69 266.2 186 65.6
Cfa009733 Carpinus fangiana HOM05D005867 ORTHO05D007273 2.5e-69 265.8 186 65.6
TWI60G1455 Tripterygium wilfordii HOM05D005867 ORTHO05D007273 2.5e-69 265.8 186 63.4
HanXRQChr14g0453051 Helianthus annuus HOM05D005867 ORTHO05D007273 4.3e-69 265.0 185 64.9
CiPaw.13G163600 Carya illinoinensis HOM05D005867 ORTHO05D007273 7.4e-69 264.2 186 65.1
DCAR_002056 Daucus carota HOM05D005867 ORTHO05D007273 7.4e-69 264.2 186 65.1
CANSAT54G1708 Cannabis sativa HOM05D005867 ORTHO05D007273 9.6e-69 263.8 186 65.6
Peaxi162Scf00029g00326 Petunia axillaris HOM05D005867 ORTHO05D007273 9.6e-69 263.8 183 66.7
MD03G1024000 Malus domestica HOM05D005867 ORTHO05D007273 1.6e-68 263.1 186 65.6
Prupe.6G023200 Prunus persica HOM05D005867 ORTHO05D007273 1.6e-68 263.1 183 65.6
C09p64030 Brassica napus HOM05D005867 ORTHO05D007273 2.1e-68 262.7 183 63.4
BolC9t59241H Brassica oleracea HOM05D005867 ORTHO05D007273 2.1e-68 262.7 183 63.4
Oeu035742.1 Olea europaea HOM05D005867 ORTHO05D007273 4.8e-68 261.5 185 64.3
HanXRQChr02g0036871 Helianthus annuus HOM05D005867 ORTHO05D007273 6.2e-68 261.2 185 63.2
Sc06g0004490 Simmondsia chinensis HOM05D005867 ORTHO05D007273 1.4e-67 260.0 186 64.0
Nitab4.5_0002766g0030 Nicotiana tabacum HOM05D005867 ORTHO05D007273 4.0e-67 258.5 186 63.4
Mapoly0061s0125 Marchantia polymorpha HOM05D005867 ORTHO05D007273 6.9e-67 257.7 182 59.3
MSTRG.17581 Avicennia marina HOM05D005867 ORTHO05D007273 9.0e-67 257.3 186 64.0
CAN.G575.64 Capsicum annuum HOM05D005867 ORTHO05D007273 1.2e-66 256.9 183 63.9
MD11G1028900 Malus domestica HOM05D005867 ORTHO05D007273 1.2e-66 256.9 186 63.4
Dinv08036 Davidia involucrata HOM05D005867 ORTHO05D007273 1.5e-66 256.5 178 65.7
Nitab4.5_0001925g0100 Nicotiana tabacum HOM05D005867 ORTHO05D007273 2.0e-66 256.1 181 63.5
PGSC0003DMG400013588 Solanum tuberosum HOM05D005867 ORTHO05D007273 2.0e-66 256.1 183 63.4
MSTRG.21396 Avicennia marina HOM05D005867 ORTHO05D007273 2.6e-66 255.8 186 62.9
Nitab4.5_0008647g0010 Nicotiana tabacum HOM05D005867 ORTHO05D007273 3.4e-66 255.4 181 63.5
Nitab4.5_0008868g0020 Nicotiana tabacum HOM05D005867 ORTHO05D007273 3.4e-66 255.4 186 63.4
SGA_v2.0_scaffold8G04610 Striga asiatica HOM05D005867 ORTHO05D007273 3.4e-66 255.4 186 62.9
RcHm_v2.0_Chr5g0077191 Rosa chinensis HOM05D005867 ORTHO05D007273 4.5e-66 255.0 183 64.5
Migut.D00576 Erythranthe guttata HOM05D005867 ORTHO05D007273 5.8e-66 254.6 181 63.0
Migut.N02304 Erythranthe guttata HOM05D005867 ORTHO05D007273 5.8e-66 254.6 186 61.3
Solyc11g061760.3 Solanum lycopersicum HOM05D005867 ORTHO05D007273 1.3e-65 253.4 180 63.3
Sopen11g023660 Solanum pennellii HOM05D005867 ORTHO05D007273 1.3e-65 253.4 180 63.3
Haze_23087 Corylus avellana HOM05D005867 ORTHO05D007273 2.9e-65 252.3 174 66.1
Solyc12g100050.2 Solanum lycopersicum HOM05D005867 ORTHO05D007273 3.8e-65 251.9 183 62.8
PGSC0003DMG400023838 Solanum tuberosum HOM05D005867 ORTHO05D007273 4.9e-65 251.5 183 62.3
FAN25G0812 Fragaria x ananassa HOM05D005867 ORTHO05D007273 8.4e-65 250.8 180 63.9
Oeu052048.1 Olea europaea HOM05D005867 ORTHO05D007273 8.4e-65 250.8 183 63.4
Lalb_Chr14g0372181 Lupinus albus HOM05D005867 ORTHO05D007273 1.1e-64 250.4 186 62.4
unitig_21.g20645 Utricularia gibba HOM05D005867 ORTHO05D007273 1.1e-64 250.4 186 61.3
FvH4_3g43090 Fragaria vesca HOM05D005867 ORTHO05D007273 1.4e-64 250.0 180 63.3
FAN11G1123 Fragaria x ananassa HOM05D005867 ORTHO05D007273 1.4e-64 250.0 180 63.3
Sopen12g034670 Solanum pennellii HOM05D005867 ORTHO05D007273 1.4e-64 250.0 183 61.7
FAN21G2433 Fragaria x ananassa HOM05D005867 ORTHO05D007273 2.4e-64 249.2 180 63.9
TWI34G0922 Tripterygium wilfordii HOM05D005867 ORTHO05D007273 2.4e-64 249.2 172 65.7
arahy.Tifrunner.gnm1.ann1.2D2P15 Arachis hypogaea HOM05D005867 ORTHO05D007273 3.2e-64 248.8 186 62.4
FAN16G1279 Fragaria x ananassa HOM05D005867 ORTHO05D007273 5.5e-64 248.1 180 63.9
arahy.Tifrunner.gnm1.ann1.V9D8IR Arachis hypogaea HOM05D005867 ORTHO05D007273 7.1e-64 247.7 186 61.8
Ca_01285_v3 Cicer arietinum L. HOM05D005867 ORTHO05D007273 7.1e-64 247.7 187 63.1
SalBow4G1382 Salvia bowleyana HOM05D005867 ORTHO05D007273 7.1e-64 247.7 183 61.2
SalBow4G0034 Salvia bowleyana HOM05D005867 ORTHO05D007273 2.1e-63 246.1 183 60.7
Lj3g0003495 Lotus japonicus HOM05D005867 ORTHO05D007273 4.6e-63 245.0 187 63.1
TPR.G6870 Trifolium pratense HOM05D005867 ORTHO05D007273 7.9e-63 244.2 187 61.5
Cfa009734 Carpinus fangiana HOM05D005867 ORTHO05D007273 1.0e-62 243.8 185 61.6
Duzib150G0087 Durio zibethinus HOM05D005867 ORTHO05D007273 2.3e-62 242.7 181 65.2
Psat5g287440 Pisum sativum HOM05D005867 ORTHO05D007273 3.0e-62 242.3 187 61.5
Medtr1g058050 Medicago truncatula HOM05D005867 ORTHO05D007273 8.7e-62 240.7 187 61.5
Medtr8g096810 Medicago truncatula HOM05D005867 ORTHO05D007273 3.3e-61 238.8 187 60.4
Medtr2g098170 Medicago truncatula HOM05D005867 ORTHO05D007273 5.6e-61 238.0 187 60.4
CBR_g20418 Chara braunii HOM05D005867 ORTHO05D007273 7.4e-61 237.7 174 60.3
Medtr2g017985 Medicago truncatula HOM05D005867 ORTHO05D007273 7.4e-61 237.7 187 60.4
QL01p005297 Quercus lobata HOM05D005867 ORTHO05D007273 8.1e-60 234.2 183 60.7
SMO147G0033 Selaginella moellendorffii HOM05D005867 ORTHO05D007273 8.1e-60 234.2 180 55.6
Pp3c14_26010 Physcomitrium patens HOM05D005867 ORTHO05D007273 4.0e-59 231.9 181 55.2
CiPaw.13G163500 Carya illinoinensis HOM05D005867 ORTHO05D007273 2.2e-57 226.1 186 57.0
Os02g0717900 Oryza sativa ssp. japonica HOM05D005867 ORTHO05D007273 6.0e-55 218.0 185 56.8
MBI01_g27622_MAGBIO Magnolia biondii HOM05D005867 ORTHO05D007273 5.7e-53 211.5 172 61.0
Pp3c1_37310 Physcomitrium patens HOM05D005867 ORTHO05D007273 1.4e-51 206.8 177 51.4
Os09g0486000 Oryza sativa ssp. japonica HOM05D005867 ORTHO05D007273 9.7e-45 184.1 180 52.2
HPP92_022794 Vanilla planifolia HOM05D005867 ORTHO05D007273 3.7e-44 182.2 155 54.2
Zm00001eb316590 Zea mays HOM05D005867 ORTHO05D007273 9.1e-35 151.0 193 43.0
Lj2P647T17 Lonicera japonica HOM05D005867 ORTHO05D007273 3.1e-27 125.9 89 66.3
Zm00001eb189280 Zea mays HOM05D005867 ORTHO05D007273 2.2e-25 119.8 86 64.0
Mapoly0008s0230 Marchantia polymorpha HOM05D005867 ORTHO05D254737 3.8e-25 119.0 156 37.2
Actinidia28459 Actinidia chinensis HOM05D005867 ORTHO05D055216 3.8e-17 92.4 66 68.2
Cfa022043 Carpinus fangiana HOM05D002321 ORTHO05D006940 4.2e-08 62.4 90 36.7


User provided reference genes

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