Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0605G272 Amborella trichopoda HOM05D019715 ORTHO05D015759 3.1e-119 431.8 218 100.0
ATR0789G019 Amborella trichopoda HOM05D019715 ORTHO05D015759 6.5e-32 141.7 228 44.7
ATR0626G095 Amborella trichopoda HOM05D019715 ORTHO05D031081 2.3e-29 133.3 226 43.4
ATR0605G107 Amborella trichopoda HOM05D019715 ORTHO05D031081 2.3e-21 106.7 244 36.1
ATR0605G382 Amborella trichopoda HOM05D019715 ORTHO05D062257 5.5e-15 85.5 131 47.3
SEGI_37376 Sequoiadendron giganteum HOM05D000333 ORTHO05D000190 1.2e-09 67.8 63 52.4
Actinidia37579 Actinidia chinensis HOM05D001336 ORTHO05D001211 1.0e-08 64.7 126 38.1
Oeu017349.1 Olea europaea HOM05D000333 ORTHO05D000190 2.9e-08 63.2 124 37.1
GSVIVG01028555001 Vitis vinifera HOM05D000333 ORTHO05D000190 6.5e-08 62.0 108 38.9
Eucgr.F02891 Eucalyptus grandis HOM05D000333 ORTHO05D000190 1.1e-07 61.2 64 45.3
vmacro02742 Vaccinium macrocarpon HOM05D000333 ORTHO05D000190 1.1e-07 61.2 54 55.6
FAN05G2386 Fragaria x ananassa HOM05D000333 ORTHO05D000190 1.5e-07 60.8 77 42.9
FAN09G3007 Fragaria x ananassa HOM05D000333 ORTHO05D000190 1.5e-07 60.8 77 42.9
HanXRQChr01g0014731 Helianthus annuus HOM05D000333 ORTHO05D000190 1.5e-07 60.8 71 46.5
MD10G1169000 Malus domestica HOM05D000333 ORTHO05D000190 1.5e-07 60.8 126 36.5
Sp6g41100 Schrenkiella parvula HOM05D000333 ORTHO05D000190 1.5e-07 60.8 106 35.8
CDE06G0163 Ceratophyllum demersum HOM05D000333 ORTHO05D000190 1.9e-07 60.5 48 58.3
FvH4_6g28840 Fragaria vesca HOM05D000333 ORTHO05D000190 1.9e-07 60.5 54 53.7
FAN14G2736 Fragaria x ananassa HOM05D000333 ORTHO05D000190 1.9e-07 60.5 54 53.7
Rhsim01G0257900 Rhododendron simsii HOM05D000333 ORTHO05D000190 1.9e-07 60.5 71 46.5
TWI53G1597 Tripterygium wilfordii HOM05D000333 ORTHO05D000190 1.9e-07 60.5 169 31.4
FAN02G4128 Fragaria x ananassa HOM05D000333 ORTHO05D000190 3.2e-07 59.7 54 51.9
MSTRG.21436 Avicennia marina HOM05D000333 ORTHO05D000190 4.2e-07 59.3 55 54.5
Cfa002541 Carpinus fangiana HOM05D000333 ORTHO05D000190 4.2e-07 59.3 112 34.8
Aa31LG5G11530 Aethionema arabicum HOM05D000333 ORTHO05D000190 5.5e-07 58.9 115 31.3
DCAR_018549 Daucus carota HOM05D000333 ORTHO05D000190 5.5e-07 58.9 112 38.4
Gohir.A10G090500 Gossypium hirsutum HOM05D000333 ORTHO05D000190 5.5e-07 58.9 147 31.3
RcHm_v2.0_Chr4g0424291 Rosa chinensis HOM05D001250 ORTHO05D000627 5.5e-07 58.9 140 35.0
ATR0789G138 Amborella trichopoda HOM05D019715 ORTHO05D031081 7.2e-07 58.5 89 44.9
C08p48840 Brassica napus HOM05D001250 ORTHO05D000627 7.2e-07 58.5 94 33.0
BolC8t52421H Brassica oleracea HOM05D001250 ORTHO05D000627 7.2e-07 58.5 94 33.0
CAN.G1483.2 Capsicum annuum HOM05D000333 ORTHO05D000190 7.2e-07 58.5 57 47.4
CDE02G2338 Ceratophyllum demersum HOM05D000333 ORTHO05D000190 7.2e-07 58.5 46 58.7
Atru.chr5.2446 Acer truncatum HOM05D000333 ORTHO05D000190 9.4e-07 58.2 162 35.2
EL10Ac7g17799 Beta vulgaris HOM05D000333 ORTHO05D000190 9.4e-07 58.2 45 64.4
BcaC07g41820 Brassica carinata HOM05D001250 ORTHO05D000627 9.4e-07 58.2 94 33.0
DCAR_012630 Daucus carota HOM05D000333 ORTHO05D000190 9.4e-07 58.2 128 35.2
Lalb_Chr23g0272191 Lupinus albus HOM05D000333 ORTHO05D000190 9.4e-07 58.2 48 58.3
Manes.04G090330 Manihot esculenta HOM05D000333 ORTHO05D000190 9.4e-07 58.2 144 34.0
RcHm_v2.0_Chr6g0254511 Rosa chinensis HOM05D000333 ORTHO05D000190 9.4e-07 58.2 159 33.3
Medtr1g033340 Medicago truncatula HOM05D000333 ORTHO05D000190 1.2e-06 57.8 89 37.1
Os07g0593000 Oryza sativa ssp. japonica HOM05D000333 ORTHO05D000190 1.2e-06 57.8 168 31.5
Phvul.009G089000 Phaseolus vulgaris HOM05D000333 ORTHO05D000190 1.2e-06 57.8 53 50.9
TAR622G0945 Trochodendron aralioides HOM05D000333 ORTHO05D000190 1.2e-06 57.8 67 47.8
VMungo1309G1263 Vigna mungo HOM05D000333 ORTHO05D000190 1.2e-06 57.8 51 54.9
Aqoxy3G01735 Aquilegia oxysepala HOM05D000333 ORTHO05D000190 1.6e-06 57.4 42 64.3
CSS0035342 Camellia sinensis var. sinensis HOM05D000333 ORTHO05D000190 1.6e-06 57.4 47 57.4
AUR62031825 Chenopodium quinoa HOM05D000333 ORTHO05D000190 1.6e-06 57.4 80 43.8
Thhalv10015799m.g Eutrema salsugineum HOM05D000333 ORTHO05D000190 1.6e-06 57.4 84 38.1
MBI10_g43787_MAGBIO Magnolia biondii HOM05D000333 ORTHO05D000190 1.6e-06 57.4 76 42.1
Nitab4.5_0000538g0070 Nicotiana tabacum HOM05D000333 ORTHO05D000190 1.6e-06 57.4 66 45.5
Psat2g045480 Pisum sativum HOM05D000333 ORTHO05D000190 1.6e-06 57.4 175 31.4
Sed0024094 Sechium edule HOM05D000333 ORTHO05D000190 1.6e-06 57.4 64 46.9
SEGI_11711 Sequoiadendron giganteum HOM05D000333 ORTHO05D000190 1.6e-06 57.4 165 29.7
Thecc.01G309700 Theobroma cacao HOM05D001250 ORTHO05D000627 1.6e-06 57.4 70 41.4
vmacro10576 Vaccinium macrocarpon HOM05D001250 ORTHO05D000627 1.6e-06 57.4 117 37.6
VMungo1383G2873 Vigna mungo HOM05D001490 ORTHO05D001450 1.6e-06 57.4 135 32.6
AL6G21570 Arabidopsis lyrata HOM05D000333 ORTHO05D000190 2.1e-06 57.0 69 47.8
Ciclev10007077m.g Citrus clementina HOM05D000333 ORTHO05D000190 2.1e-06 57.0 84 38.1
MELO3C015943.2 Cucumis melo HOM05D001250 ORTHO05D000627 2.1e-06 57.0 55 49.1
Glyma.10G260600 Glycine max HOM05D000333 ORTHO05D000190 2.1e-06 57.0 77 45.5
Glyma.11G214300 Glycine max HOM05D000333 ORTHO05D000190 2.1e-06 57.0 68 42.6
Gohir.A08G193850 Gossypium hirsutum HOM05D000333 ORTHO05D000190 2.1e-06 57.0 74 43.2
Gohir.D10G097400 Gossypium hirsutum HOM05D000333 ORTHO05D000190 2.1e-06 57.0 149 30.9
Gorai.011G106900 Gossypium raimondii HOM05D000333 ORTHO05D000190 2.1e-06 57.0 149 30.9
Lsat_1_v5_gn_5_179601 Lactuca sativa HOM05D000333 ORTHO05D000190 2.1e-06 57.0 70 44.3
Nitab4.5_0000640g0010 Nicotiana tabacum HOM05D000333 ORTHO05D000190 2.1e-06 57.0 66 45.5
Phvul.008G238700 Phaseolus vulgaris HOM05D000333 ORTHO05D000190 2.1e-06 57.0 118 35.6
Potri.018G123900 Populus trichocarpa HOM05D000333 ORTHO05D000190 2.1e-06 57.0 75 44.0
RcHm_v2.0_Chr2g0133371 Rosa chinensis HOM05D000333 ORTHO05D000190 2.1e-06 57.0 45 57.8
SGA_v2.0_scaffold1G00711 Striga asiatica HOM05D000333 ORTHO05D000190 2.1e-06 57.0 65 47.7
unitig_62.g23751 Utricularia gibba HOM05D000333 ORTHO05D000190 2.1e-06 57.0 53 54.7
BcaB05g21905 Brassica carinata HOM05D000333 ORTHO05D000190 2.7e-06 56.6 76 40.8
Migut.D00516 Erythranthe guttata HOM05D000333 ORTHO05D000190 2.7e-06 56.6 63 46.0
Migut.J01383 Erythranthe guttata HOM05D000333 ORTHO05D000190 2.7e-06 56.6 74 41.9
MD05G1179400 Malus domestica HOM05D000333 ORTHO05D000190 2.7e-06 56.6 124 35.5
Manes.02G079300 Manihot esculenta HOM05D000333 ORTHO05D000190 2.7e-06 56.6 80 38.8
PSO017G3924 Papaver somniferum HOM05D000333 ORTHO05D000190 2.7e-06 56.6 35 77.1
SMO356G0105 Selaginella moellendorffii HOM05D002136 ORTHO05D002145 2.7e-06 56.6 78 42.3
TPR.G9997 Trifolium pratense HOM05D000333 ORTHO05D000190 2.7e-06 56.6 86 40.7
VMungo0720G0031 Vigna mungo HOM05D000333 ORTHO05D000190 2.7e-06 56.6 63 49.2
Actinidia14908 Actinidia chinensis HOM05D001250 ORTHO05D000627 3.6e-06 56.2 74 44.6
BcaB08g37354 Brassica carinata HOM05D001250 ORTHO05D000627 3.6e-06 56.2 89 33.7
A09p65040 Brassica napus HOM05D001250 ORTHO05D000627 3.6e-06 56.2 104 29.8
BraA09t41847Z Brassica rapa HOM05D001250 ORTHO05D000627 3.6e-06 56.2 104 29.8
Ca_17082_v3 Cicer arietinum L. HOM05D000333 ORTHO05D000190 3.6e-06 56.2 74 40.5
Ciclev10003844m.g Citrus clementina HOM05D000333 ORTHO05D000190 3.6e-06 56.2 68 48.5
Migut.F00027 Erythranthe guttata HOM05D000333 ORTHO05D000190 3.6e-06 56.2 62 46.8
FvH4_2g19520 Fragaria vesca HOM05D000333 ORTHO05D000190 3.6e-06 56.2 112 39.3
Glyma.18G295500 Glycine max HOM05D001250 ORTHO05D000627 3.6e-06 56.2 86 40.7
Hma1.2p1_1061F.1_g253270 Hydrangea macrophylla HOM05D000333 ORTHO05D000190 3.6e-06 56.2 80 38.8
Manes.04G155200 Manihot esculenta HOM05D000333 ORTHO05D000190 3.6e-06 56.2 108 38.0
Psat6g050440 Pisum sativum HOM05D000333 ORTHO05D000190 3.6e-06 56.2 82 41.5
PGR004G0494 Punica granatum HOM05D014763 ORTHO05D015759 3.6e-06 56.2 51 47.1
QL07p002376 Quercus lobata HOM05D000333 ORTHO05D000190 3.6e-06 56.2 72 43.1
SMO356G0172 Selaginella moellendorffii HOM05D058479 ORTHO05D000190 3.6e-06 56.2 35 71.4
SGA_v2.0_scaffold253G45160 Striga asiatica HOM05D000333 ORTHO05D000190 3.6e-06 56.2 83 42.2
SGA_v2.0_scaffold301G47799 Striga asiatica HOM05D000333 ORTHO05D000190 3.6e-06 56.2 57 49.1
SGA_v2.0_scaffold36G14545 Striga asiatica HOM05D001250 ORTHO05D000627 3.6e-06 56.2 48 52.1
SGA_v2.0_scaffold8G04654 Striga asiatica HOM05D000333 ORTHO05D000190 3.6e-06 56.2 113 37.2
TWI74G1378 Tripterygium wilfordii HOM05D001250 ORTHO05D000627 3.6e-06 56.2 89 36.0
TWI77G1001 Tripterygium wilfordii HOM05D000333 ORTHO05D000190 3.6e-06 56.2 77 44.2
TAR622G0074 Trochodendron aralioides HOM05D000333 ORTHO05D000190 3.6e-06 56.2 67 46.3
unitig_37.g12407 Utricularia gibba HOM05D001250 ORTHO05D000627 3.6e-06 56.2 45 55.6
HPP92_017511 Vanilla planifolia HOM05D000333 ORTHO05D000190 3.6e-06 56.2 65 47.7
HPP92_020148 Vanilla planifolia HOM05D001250 ORTHO05D000627 3.6e-06 56.2 82 39.0
Atru.chr10.2399 Acer truncatum HOM05D000333 ORTHO05D000190 4.7e-06 55.8 69 46.4
Aqoxy2G03794 Aquilegia oxysepala HOM05D000333 ORTHO05D000190 4.7e-06 55.8 43 62.8
CSS0048317 Camellia sinensis var. sinensis HOM05D000333 ORTHO05D000190 4.7e-06 55.8 70 45.7
AUR62008883 Chenopodium quinoa HOM05D000333 ORTHO05D000190 4.7e-06 55.8 39 66.7
ECA233G3841 Erigeron canadensis HOM05D000333 ORTHO05D000190 4.7e-06 55.8 71 42.3
Migut.N02256 Erythranthe guttata HOM05D000333 ORTHO05D000190 4.7e-06 55.8 63 47.6
Glyma.08G356600 Glycine max HOM05D000333 ORTHO05D000190 4.7e-06 55.8 54 50.0
Glyma.20G130600 Glycine max HOM05D000333 ORTHO05D000190 4.7e-06 55.8 64 50.0
Lalb_Chr13g0299471 Lupinus albus HOM05D000333 ORTHO05D000190 4.7e-06 55.8 158 33.5
MBI18_g24952_MAGBIO Magnolia biondii HOM05D001250 ORTHO05D000627 4.7e-06 55.8 58 46.6
Peaxi162Scf00052g00092 Petunia axillaris HOM05D000333 ORTHO05D000190 4.7e-06 55.8 115 37.4
Phvul.003G238800 Phaseolus vulgaris HOM05D000333 ORTHO05D000190 4.7e-06 55.8 40 65.0
Potri.006G169800 Populus trichocarpa HOM05D000333 ORTHO05D000190 4.7e-06 55.8 152 32.9
Sed0004484 Sechium edule HOM05D000333 ORTHO05D000190 4.7e-06 55.8 53 50.9
Sopen02g039080 Solanum pennellii HOM05D000333 ORTHO05D000190 4.7e-06 55.8 39 61.5
PGSC0003DMG400020239 Solanum tuberosum HOM05D000333 ORTHO05D000190 4.7e-06 55.8 38 63.2
SGA_v2.0_scaffold66G22462 Striga asiatica HOM05D000333 ORTHO05D000190 4.7e-06 55.8 44 61.4
VMungo1383G2917 Vigna mungo HOM05D000333 ORTHO05D000190 4.7e-06 55.8 54 51.9
AT5G10970 Arabidopsis thaliana HOM05D000333 ORTHO05D000190 6.1e-06 55.5 69 46.4
arahy.Tifrunner.gnm1.ann1.I5B2UF Arachis hypogaea HOM05D001250 ORTHO05D000627 6.1e-06 55.5 55 52.7
arahy.Tifrunner.gnm1.ann1.MHX50Y Arachis hypogaea HOM05D001250 ORTHO05D000627 6.1e-06 55.5 55 52.7
MSTRG.629 Avicennia marina HOM05D001250 ORTHO05D000627 6.1e-06 55.5 112 33.0
EL10Ac4g08054 Beta vulgaris HOM05D000333 ORTHO05D000190 6.1e-06 55.5 71 45.1
CSS0014574 Camellia sinensis var. sinensis HOM05D000333 ORTHO05D000190 6.1e-06 55.5 158 32.3
CiPaw.13G017200 Carya illinoinensis HOM05D000333 ORTHO05D000190 6.1e-06 55.5 52 53.8
Dinv33299 Davidia involucrata HOM05D000333 ORTHO05D000190 6.1e-06 55.5 47 55.3
FAN27G0298 Fragaria x ananassa HOM05D000333 ORTHO05D000190 6.1e-06 55.5 112 39.3
Gohir.D08G211650 Gossypium hirsutum HOM05D000333 ORTHO05D000190 6.1e-06 55.5 74 41.9
Lalb_Chr11g0067781 Lupinus albus HOM05D000333 ORTHO05D000190 6.1e-06 55.5 59 49.2
Potri.008G123100 Populus trichocarpa HOM05D001250 ORTHO05D000627 6.1e-06 55.5 110 36.4
QL09p044528 Quercus lobata HOM05D000333 ORTHO05D000190 6.1e-06 55.5 115 36.5
Sabra08G0093400 Salix brachista HOM05D001250 ORTHO05D000627 6.1e-06 55.5 61 49.2
Sabra09G0071900 Salix brachista HOM05D000333 ORTHO05D000190 6.1e-06 55.5 153 30.1
Sed0018853 Sechium edule HOM05D000333 ORTHO05D000190 6.1e-06 55.5 64 46.9
Sc24g0003590 Simmondsia chinensis HOM05D000333 ORTHO05D000190 6.1e-06 55.5 37 70.3
Sopen01g001230 Solanum pennellii HOM05D000333 ORTHO05D000190 6.1e-06 55.5 66 51.5
PGSC0003DMG400010912 Solanum tuberosum HOM05D000333 ORTHO05D000190 6.1e-06 55.5 64 43.8
PGSC0003DMG400022777 Solanum tuberosum HOM05D000333 ORTHO05D000190 6.1e-06 55.5 66 51.5
Thecc.05G034000 Theobroma cacao HOM05D000523 ORTHO05D001559 6.1e-06 55.5 144 26.4
unitig_22.g6865 Utricularia gibba HOM05D001250 ORTHO05D000627 6.1e-06 55.5 78 38.5
Atru.chr5.1981 Acer truncatum HOM05D000333 ORTHO05D000190 8.0e-06 55.1 58 48.3
ATR0105G003 Amborella trichopoda HOM05D000333 ORTHO05D000190 8.0e-06 55.1 158 31.0
EL10Ac9g22253 Beta vulgaris HOM05D000333 ORTHO05D000190 8.0e-06 55.1 151 32.5
A09p06270 Brassica napus HOM05D000333 ORTHO05D000190 8.0e-06 55.1 79 44.3
BraA09t36272Z Brassica rapa HOM05D000333 ORTHO05D000190 8.0e-06 55.1 79 44.3
CAN.G222.169 Capsicum annuum HOM05D000333 ORTHO05D000190 8.0e-06 55.1 85 41.2
Cpa.g.sc70.98 Carica papaya HOM05D000333 ORTHO05D000190 8.0e-06 55.1 50 56.0
AUR62015597 Chenopodium quinoa HOM05D000333 ORTHO05D000190 8.0e-06 55.1 62 46.8
Duzib138G0854 Durio zibethinus HOM05D001250 ORTHO05D000627 8.0e-06 55.1 70 41.4
Thhalv10015251m.g Eutrema salsugineum HOM05D000333 ORTHO05D000190 8.0e-06 55.1 60 51.7
FAN15G3092 Fragaria x ananassa HOM05D000333 ORTHO05D000190 8.0e-06 55.1 157 31.2
Gohir.A10G190501 Gossypium hirsutum HOM05D000333 ORTHO05D000190 8.0e-06 55.1 36 66.7
Gohir.D07G035000 Gossypium hirsutum HOM05D000333 ORTHO05D000190 8.0e-06 55.1 47 57.4
Gorai.001G036700 Gossypium raimondii HOM05D000333 ORTHO05D000190 8.0e-06 55.1 47 57.4
Gorai.004G224900 Gossypium raimondii HOM05D000333 ORTHO05D000190 8.0e-06 55.1 74 41.9
Lsat_1_v5_gn_8_35801 Lactuca sativa HOM05D000333 ORTHO05D000190 8.0e-06 55.1 78 37.2
Lj6P755T11 Lonicera japonica HOM05D001250 ORTHO05D000627 8.0e-06 55.1 92 38.0
Lalb_Chr25g0278971 Lupinus albus HOM05D000333 ORTHO05D000190 8.0e-06 55.1 63 46.0
Psat4g011480 Pisum sativum HOM05D000333 ORTHO05D000190 8.0e-06 55.1 150 32.0
Sabra02G0181800 Salix brachista HOM05D000333 ORTHO05D000190 8.0e-06 55.1 55 54.5
Sp2g22370 Schrenkiella parvula HOM05D000333 ORTHO05D000190 8.0e-06 55.1 64 46.9
VMungo1383G0711 Vigna mungo HOM05D000333 ORTHO05D000190 8.0e-06 55.1 57 49.1
Zm00001eb108340 Zea mays HOM05D000333 ORTHO05D000190 8.0e-06 55.1 48 56.2


User provided reference genes

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