Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0605G218 Amborella trichopoda HOM05D007237 ORTHO05D008854 8.2e-57 223.4 106 100.0
CiPaw.13G002300 Carya illinoinensis HOM05D007237 ORTHO05D008854 5.6e-37 157.5 93 71.0
Aqoxy2G00108 Aquilegia oxysepala HOM05D007237 ORTHO05D008854 9.5e-37 156.8 93 73.1
TWI53G0305 Tripterygium wilfordii HOM05D007237 ORTHO05D008854 2.1e-36 155.6 102 72.5
TWI09G0768 Tripterygium wilfordii HOM05D007237 ORTHO05D008854 4.7e-36 154.5 102 71.6
MBI04_g14266_MAGBIO Magnolia biondii HOM05D007237 ORTHO05D008854 3.0e-35 151.8 102 66.7
Manes.10G147700 Manihot esculenta HOM05D007237 ORTHO05D008854 6.8e-35 150.6 93 68.8
Manes.07G003400 Manihot esculenta HOM05D007237 ORTHO05D008854 8.9e-35 150.2 97 69.1
Duzib138G0953 Durio zibethinus HOM05D007237 ORTHO05D008854 2.6e-34 148.7 94 67.0
Glyma.08G152200 Glycine max HOM05D007237 ORTHO05D008854 3.4e-34 148.3 93 72.0
Dinv43468 Davidia involucrata HOM05D007237 ORTHO05D008854 5.7e-34 147.5 93 67.7
CSS0046270 Camellia sinensis var. sinensis HOM05D007237 ORTHO05D008854 7.5e-34 147.1 93 68.8
Gorai.008G105400 Gossypium raimondii HOM05D007237 ORTHO05D008854 9.8e-34 146.7 89 69.7
Glyma.15G271600 Glycine max HOM05D007237 ORTHO05D008854 1.3e-33 146.4 93 71.0
Hma1.2p1_0845F.1_g227580 Hydrangea macrophylla HOM05D007237 ORTHO05D008854 1.7e-33 146.0 103 65.0
Psat5g205480 Pisum sativum HOM05D007237 ORTHO05D008854 1.7e-33 146.0 101 64.4
MD02G1316200 Malus domestica HOM05D007237 ORTHO05D008854 2.2e-33 145.6 92 70.7
Thecc.01G414400 Theobroma cacao HOM05D007237 ORTHO05D008854 2.2e-33 145.6 99 65.7
Oeu036184.1 Olea europaea HOM05D007237 ORTHO05D008854 2.9e-33 145.2 102 65.7
COL.COLO4_23903 Corchorus olitorius HOM05D005285 ORTHO05D006829 3.7e-33 144.8 76 80.3
Sabra16G0166400 Salix brachista HOM05D007237 ORTHO05D008854 3.7e-33 144.8 93 67.7
Sc11g0009340 Simmondsia chinensis HOM05D007237 ORTHO05D008854 4.9e-33 144.4 93 66.7
Ciclev10033078m.g Citrus clementina HOM05D007237 ORTHO05D008854 6.4e-33 144.1 98 66.3
Atru.chr11.2633 Acer truncatum HOM05D007237 ORTHO05D008854 8.3e-33 143.7 101 63.4
arahy.Tifrunner.gnm1.ann1.CQ9Q2Z Arachis hypogaea HOM05D007237 ORTHO05D008854 8.3e-33 143.7 91 69.2
arahy.Tifrunner.gnm1.ann1.PP9VDR Arachis hypogaea HOM05D007237 ORTHO05D008854 8.3e-33 143.7 91 69.2
Potri.001G271000 Populus trichocarpa HOM05D007237 ORTHO05D008854 8.3e-33 143.7 93 65.6
Gohir.A12G094200 Gossypium hirsutum HOM05D007237 ORTHO05D008854 1.1e-32 143.3 99 65.7
Peaxi162Scf00428g01024 Petunia axillaris HOM05D007237 ORTHO05D008854 1.1e-32 143.3 95 63.2
arahy.Tifrunner.gnm1.ann1.1X74KR Arachis hypogaea HOM05D007237 ORTHO05D008854 1.4e-32 142.9 96 65.6
Eucgr.J01258 Eucalyptus grandis HOM05D007237 ORTHO05D008854 1.4e-32 142.9 98 64.3
HanXRQChr11g0330541 Helianthus annuus HOM05D007237 ORTHO05D008854 1.4e-32 142.9 100 66.0
QL04p004894 Quercus lobata HOM05D007237 ORTHO05D008854 1.4e-32 142.9 99 63.6
RcHm_v2.0_Chr1g0314811 Rosa chinensis HOM05D007237 ORTHO05D008854 1.4e-32 142.9 93 66.7
PSO017G6688 Papaver somniferum HOM05D007237 ORTHO05D008854 1.8e-32 142.5 94 67.0
ECA234G1833 Erigeron canadensis HOM05D007237 ORTHO05D008854 2.4e-32 142.1 93 65.6
PGR044G2203 Punica granatum HOM05D007237 ORTHO05D008854 2.4e-32 142.1 94 63.8
HanXRQChr16g0519611 Helianthus annuus HOM05D007237 ORTHO05D008854 3.2e-32 141.7 93 67.7
Medtr3g027590 Medicago truncatula HOM05D007237 ORTHO05D008854 3.2e-32 141.7 103 62.1
Prupe.2G008100 Prunus persica HOM05D007237 ORTHO05D008854 3.2e-32 141.7 93 64.5
Actinidia31685 Actinidia chinensis HOM05D007237 ORTHO05D008854 5.4e-32 141.0 100 69.0
CANSAT21G0694 Cannabis sativa HOM05D007237 ORTHO05D008854 5.4e-32 141.0 98 65.3
AUR62009369 Chenopodium quinoa HOM05D005285 ORTHO05D006829 5.4e-32 141.0 96 62.5
FvH4_7g00620 Fragaria vesca HOM05D007237 ORTHO05D008854 7.0e-32 140.6 93 64.5
Gohir.D08G166900 Gossypium hirsutum HOM05D007237 ORTHO05D008854 7.0e-32 140.6 100 64.0
Gorai.004G174300 Gossypium raimondii HOM05D007237 ORTHO05D008854 7.0e-32 140.6 100 64.0
vmacro13649 Vaccinium macrocarpon HOM05D000102 ORTHO05D000138 7.0e-32 140.6 94 63.8
Oeu036183.1 Olea europaea HOM05D000288 ORTHO05D008854 1.2e-31 139.8 100 65.0
Lalb_Chr20g0108101 Lupinus albus HOM05D007237 ORTHO05D008854 1.6e-31 139.4 93 63.4
Gohir.A08G146000 Gossypium hirsutum HOM05D007237 ORTHO05D008854 2.0e-31 139.0 100 64.0
MD07G1005700 Malus domestica HOM05D007237 ORTHO05D008854 2.0e-31 139.0 92 66.3
TPR.G12234 Trifolium pratense HOM05D007237 ORTHO05D008854 2.0e-31 139.0 92 67.4
MSTRG.28082 Avicennia marina HOM05D007237 ORTHO05D008854 4.6e-31 137.9 102 62.7
Migut.O00928 Erythranthe guttata HOM05D007237 ORTHO05D008854 4.6e-31 137.9 96 61.5
HanXRQChr17g0563491 Helianthus annuus HOM05D007237 ORTHO05D008854 4.6e-31 137.9 104 60.6
Lj3g0027771 Lotus japonicus HOM05D007237 ORTHO05D008854 4.6e-31 137.9 93 66.7
Ah.12g061430 Amaranthus hybridus HOM05D000016 ORTHO05D000433 5.9e-31 137.5 92 63.0
Lalb_Chr03g0033911 Lupinus albus HOM05D007237 ORTHO05D008854 5.9e-31 137.5 94 67.0
CAN.G1393.1 Capsicum annuum HOM05D007237 ORTHO05D008854 7.8e-31 137.1 96 63.5
Lsat_1_v5_gn_4_46201 Lactuca sativa HOM05D007237 ORTHO05D008854 7.8e-31 137.1 95 65.3
SalBow4G0796 Salvia bowleyana HOM05D007237 ORTHO05D008854 7.8e-31 137.1 92 64.1
THA.LOC104825138 Tarenaya hassleriana HOM05D007237 ORTHO05D008854 7.8e-31 137.1 81 69.1
Phvul.005G037300 Phaseolus vulgaris HOM05D007237 ORTHO05D008854 1.0e-30 136.7 97 66.0
SGA_v2.0_scaffold4G02250 Striga asiatica HOM05D000288 ORTHO05D000173 1.7e-30 136.0 99 62.6
FAN01G1198 Fragaria x ananassa HOM05D005285 ORTHO05D006829 2.3e-30 135.6 92 63.0
Prupe.2G008300 Prunus persica HOM05D007237 ORTHO05D008854 2.3e-30 135.6 97 62.9
Solyc01g086830.4 Solanum lycopersicum HOM05D007237 ORTHO05D008854 6.6e-30 134.0 98 60.2
Sopen01g033840 Solanum pennellii HOM05D007237 ORTHO05D008854 6.6e-30 134.0 98 60.2
SGA_v2.0_scaffold95G28787 Striga asiatica HOM05D000288 ORTHO05D000173 6.6e-30 134.0 95 61.1
Aa31LG10G7220 Aethionema arabicum HOM05D007237 ORTHO05D008854 1.9e-29 132.5 81 66.7
EL10Ac2g04307 Beta vulgaris HOM05D007237 ORTHO05D008854 1.9e-29 132.5 84 69.0
Carub.0005s1847 Capsella rubella HOM05D007237 ORTHO05D008854 4.3e-29 131.3 77 70.1
Thhalv10010991m.g Eutrema salsugineum HOM05D007237 ORTHO05D008854 5.6e-29 131.0 75 70.7
AL5G32700 Arabidopsis lyrata HOM05D007237 ORTHO05D008854 7.3e-29 130.6 75 72.0
A09p45190 Brassica napus HOM05D007237 ORTHO05D008854 7.3e-29 130.6 75 72.0
BolC8t50357H Brassica oleracea HOM05D007237 ORTHO05D008854 7.3e-29 130.6 75 72.0
BraA09t39982Z Brassica rapa HOM05D007237 ORTHO05D008854 7.3e-29 130.6 75 72.0
Sp5g10150 Schrenkiella parvula HOM05D007237 ORTHO05D008854 7.3e-29 130.6 75 69.3
BcaC06g33382 Brassica carinata HOM05D007237 ORTHO05D008854 9.5e-29 130.2 75 72.0
A03p48720 Brassica napus HOM05D007237 ORTHO05D008854 9.5e-29 130.2 75 72.0
C07p46810 Brassica napus HOM05D007237 ORTHO05D008854 9.5e-29 130.2 75 72.0
BolC7t45198H Brassica oleracea HOM05D007237 ORTHO05D008854 9.5e-29 130.2 75 72.0
BraA03t13972Z Brassica rapa HOM05D007237 ORTHO05D008854 9.5e-29 130.2 75 72.0
CARHR161870 Cardamine hirsuta HOM05D007237 ORTHO05D008854 1.6e-28 129.4 75 72.0
BcaNung06095 Brassica carinata HOM05D007237 ORTHO05D008854 3.6e-28 128.3 75 70.7
C08p27400 Brassica napus HOM05D007237 ORTHO05D008854 3.6e-28 128.3 75 70.7
Cc02_g27480 Coffea canephora HOM05D007237 ORTHO05D008854 6.2e-28 127.5 94 60.6
BcaC02g09277 Brassica carinata HOM05D007237 ORTHO05D008854 8.0e-28 127.1 75 68.0
A04p07230 Brassica napus HOM05D007237 ORTHO05D008854 8.0e-28 127.1 75 68.0
C04p40790 Brassica napus HOM05D007237 ORTHO05D008854 8.0e-28 127.1 75 68.0
Sed0015658 Sechium edule HOM05D007237 ORTHO05D008854 1.8e-27 125.9 89 59.6
Ah.12g052640 Amaranthus hybridus HOM05D000491 ORTHO05D008854 5.2e-27 124.4 83 63.9
C05p59860 Brassica napus HOM05D007237 ORTHO05D008854 8.9e-27 123.6 98 52.0
BolC5t34640H Brassica oleracea HOM05D007237 ORTHO05D008854 8.9e-27 123.6 98 52.0
Thhalv10022125m.g Eutrema salsugineum HOM05D007237 ORTHO05D008854 1.2e-26 123.2 78 62.8
unitig_8.g3625 Utricularia gibba HOM05D007237 ORTHO05D008854 1.5e-26 122.9 91 61.5
CARHR082100 Cardamine hirsuta HOM05D007237 ORTHO05D008854 3.4e-26 121.7 94 54.3
AT3G07450 Arabidopsis thaliana HOM05D007237 ORTHO05D008854 4.4e-26 121.3 102 53.9
Carub.0003s0700 Capsella rubella HOM05D007237 ORTHO05D008854 7.5e-26 120.6 100 52.0
BraA05t22806Z Brassica rapa HOM05D007237 ORTHO05D008854 1.3e-25 119.8 98 52.0
A05p40750 Brassica napus HOM05D007237 ORTHO05D008854 1.7e-25 119.4 99 52.5
AL3G18770 Arabidopsis lyrata HOM05D007237 ORTHO05D008854 2.2e-25 119.0 92 53.3
ClCG09G004370 Citrullus lanatus HOM05D007237 ORTHO05D008854 3.7e-25 118.2 99 50.5
C03p42880 Brassica napus HOM05D007237 ORTHO05D008854 1.1e-24 116.7 102 49.0
BolC3t16556H Brassica oleracea HOM05D007237 ORTHO05D008854 1.1e-24 116.7 102 49.0
MELO3C023529.2 Cucumis melo HOM05D007237 ORTHO05D008854 2.4e-24 115.5 97 48.5
Haze_03241 Corylus avellana HOM05D007237 ORTHO05D008854 3.2e-24 115.2 72 70.8
THA.LOC104820127 Tarenaya hassleriana HOM05D007237 ORTHO05D008854 3.2e-24 115.2 74 64.9
A03p35260 Brassica napus HOM05D007237 ORTHO05D008854 9.2e-24 113.6 102 48.0
BraA03t12704Z Brassica rapa HOM05D007237 ORTHO05D008854 9.2e-24 113.6 102 48.0
CsaV3_7G031300 Cucumis sativus L. HOM05D007237 ORTHO05D008854 1.2e-23 113.2 97 48.5
BcaB03g14701 Brassica carinata HOM05D007237 ORTHO05D008854 1.6e-23 112.8 102 48.0
BcaC01g04282 Brassica carinata HOM05D007237 ORTHO05D008854 2.0e-23 112.5 95 49.5
Rhsim07G0053900 Rhododendron simsii HOM05D000102 ORTHO05D000138 2.7e-23 112.1 59 78.0
CDE10G0734 Ceratophyllum demersum HOM05D007237 ORTHO05D008854 2.1e-20 102.4 79 50.6
Sed0001876 Sechium edule HOM05D007237 ORTHO05D008854 8.1e-20 100.5 97 45.4
Oeu039102.1 Olea europaea HOM05D005285 ORTHO05D006829 2.3e-19 99.0 90 52.2
Oeu039103.1 Olea europaea HOM05D005285 ORTHO05D008854 2.3e-19 99.0 90 52.2
BcaC05g29536 Brassica carinata HOM05D007237 ORTHO05D008854 4.4e-18 94.7 88 46.6
SHI04057 Sapria himalayana HOM05D007237 ORTHO05D008854 3.9e-14 81.6 100 40.0
Nitab4.5_0011417g0010 Nicotiana tabacum HOM05D001848 ORTHO05D001295 5.8e-10 67.8 96 38.5
arahy.Tifrunner.gnm1.ann1.N7EMKY Arachis hypogaea HOM05D001848 ORTHO05D001295 1.3e-09 66.6 92 39.1
arahy.Tifrunner.gnm1.ann1.QR3PTX Arachis hypogaea HOM05D001848 ORTHO05D001295 1.3e-09 66.6 99 37.4
arahy.Tifrunner.gnm1.ann1.0X4CPT Arachis hypogaea HOM05D001848 ORTHO05D001295 2.9e-09 65.5 99 36.4
arahy.Tifrunner.gnm1.ann1.IET74Z Arachis hypogaea HOM05D001848 ORTHO05D001295 2.9e-09 65.5 92 39.1
CAN.G322.111 Capsicum annuum HOM05D001848 ORTHO05D001295 2.9e-09 65.5 95 34.7
Glyma.20G248700 Glycine max HOM05D001848 ORTHO05D001295 3.8e-09 65.1 100 35.0
Rhsim12G0036500 Rhododendron simsii HOM05D001848 ORTHO05D001295 3.8e-09 65.1 99 38.4
Glyma.10G297600 Glycine max HOM05D001848 ORTHO05D001295 4.9e-09 64.7 92 37.0
arahy.Tifrunner.gnm1.ann1.FN75LP Arachis hypogaea HOM05D001848 ORTHO05D001295 1.4e-08 63.2 95 36.8
Cfa008554 Carpinus fangiana HOM05D001848 ORTHO05D001295 1.9e-08 62.8 100 37.0
PGSC0003DMG400025168 Solanum tuberosum HOM05D001848 ORTHO05D001295 1.9e-08 62.8 89 34.8
Sc17g0001710 Simmondsia chinensis HOM05D001848 ORTHO05D001295 2.4e-08 62.4 96 34.4
TWI38G0794 Tripterygium wilfordii HOM05D001848 ORTHO05D001295 2.4e-08 62.4 91 35.2
arahy.Tifrunner.gnm1.ann1.UI26XR Arachis hypogaea HOM05D001848 ORTHO05D001295 3.2e-08 62.0 91 38.5
Rhsim12G0036400 Rhododendron simsii HOM05D001848 ORTHO05D001295 3.2e-08 62.0 95 35.8
Phvul.007G001800 Phaseolus vulgaris HOM05D001848 ORTHO05D001295 5.4e-08 61.2 70 42.9
Atru.chr3.1703 Acer truncatum HOM05D001848 ORTHO05D001295 7.1e-08 60.8 95 35.8
Sopen01g051580 Solanum pennellii HOM05D001848 ORTHO05D001295 7.1e-08 60.8 89 34.8
Prupe.1G179900 Prunus persica HOM05D001848 ORTHO05D001295 1.2e-07 60.1 100 36.0
Solyc01g109390.3 Solanum lycopersicum HOM05D001848 ORTHO05D001295 1.2e-07 60.1 95 32.6
GSVIVG01031677001 Vitis vinifera HOM05D001848 ORTHO05D001295 1.2e-07 60.1 58 48.3
CSS0044367 Camellia sinensis var. sinensis HOM05D001848 ORTHO05D001295 1.6e-07 59.7 98 33.7
MD11G1207300 Malus domestica HOM05D001848 ORTHO05D001295 2.1e-07 59.3 62 46.8
Dinv44234 Davidia involucrata HOM05D000090 ORTHO05D001584 2.7e-07 58.9 63 44.4
Cpa.g.sc1200.2 Carica papaya HOM05D001848 ORTHO05D001295 3.5e-07 58.5 96 33.3
Mapoly0005s0134 Marchantia polymorpha HOM05D010866 ORTHO05D008854 3.5e-07 58.5 64 42.2
arahy.Tifrunner.gnm1.ann1.202QP6 Arachis hypogaea HOM05D000001 ORTHO05D000003 4.6e-07 58.2 32 78.1
Ciclev10029642m.g Citrus clementina HOM05D001848 ORTHO05D001295 4.6e-07 58.2 58 50.0
Haze_11072 Corylus avellana HOM05D001848 ORTHO05D001295 6.0e-07 57.8 91 36.3
Sed0004601 Sechium edule HOM05D001848 ORTHO05D001295 7.8e-07 57.4 96 40.6
Solyc03g121900.1 Solanum lycopersicum HOM05D001848 ORTHO05D001295 1.0e-06 57.0 64 42.2
FvH4_3g30320 Fragaria vesca HOM05D001848 ORTHO05D001295 1.3e-06 56.6 91 37.4
Nn7g37661 Nelumbo nucifera HOM05D001848 ORTHO05D001295 1.3e-06 56.6 63 44.4
Sopen03g040720 Solanum pennellii HOM05D001848 ORTHO05D001295 1.3e-06 56.6 64 42.2
PGSC0003DMG400002487 Solanum tuberosum HOM05D001848 ORTHO05D001295 1.3e-06 56.6 64 42.2
Nn1g07396 Nelumbo nucifera HOM05D001848 ORTHO05D001295 1.7e-06 56.2 88 36.4
Prupe.8G102700 Prunus persica HOM05D001848 ORTHO05D001295 1.7e-06 56.2 61 44.3
QL11p042360 Quercus lobata HOM05D001848 ORTHO05D001295 1.7e-06 56.2 106 33.0
Atru.chr12.2390 Acer truncatum HOM05D001848 ORTHO05D001295 2.3e-06 55.8 64 42.2
ClCG09G020940 Citrullus lanatus HOM05D001848 ORTHO05D001295 2.3e-06 55.8 63 46.0
MELO3C017674.2 Cucumis melo HOM05D001848 ORTHO05D001295 2.3e-06 55.8 98 36.7
Prupe.4G228100 Prunus persica HOM05D001848 ORTHO05D001295 2.3e-06 55.8 94 34.0
RcHm_v2.0_Chr5g0056191 Rosa chinensis HOM05D001848 ORTHO05D001295 2.3e-06 55.8 63 46.0
TAR636G3109 Trochodendron aralioides HOM05D001848 ORTHO05D001295 2.3e-06 55.8 89 32.6
Atru.chr5.2942 Acer truncatum HOM05D001848 ORTHO05D001295 3.0e-06 55.5 55 47.3
Cc04_g01540 Coffea canephora HOM05D001848 ORTHO05D001295 3.0e-06 55.5 64 42.2
FAN21G1579 Fragaria x ananassa HOM05D001848 ORTHO05D001295 3.0e-06 55.5 89 37.1
MBI16_g31711_MAGBIO Magnolia biondii HOM05D001848 ORTHO05D001295 3.0e-06 55.5 93 32.3
Prupe.8G103000 Prunus persica HOM05D001848 ORTHO05D001295 3.0e-06 55.5 97 33.0
SGA_v2.0_scaffold29G12067 Striga asiatica HOM05D001848 ORTHO05D001295 3.0e-06 55.5 97 37.1
MSTRG.22559 Avicennia marina HOM05D001848 ORTHO05D001295 3.9e-06 55.1 99 29.3
CiPaw.11G196700 Carya illinoinensis HOM05D001848 ORTHO05D001295 5.1e-06 54.7 63 42.9
COL.COLO4_26580 Corchorus olitorius HOM05D001848 ORTHO05D001295 5.1e-06 54.7 95 33.7
CsaV3_7G018810 Cucumis sativus L. HOM05D001848 ORTHO05D001295 5.1e-06 54.7 96 33.3
HanXRQChr05g0141121 Helianthus annuus HOM05D001848 ORTHO05D001295 5.1e-06 54.7 95 31.6
Hma1.2p1_0412F.1_g147100 Hydrangea macrophylla HOM05D001848 ORTHO05D001295 5.1e-06 54.7 93 34.4
TAR627G0109 Trochodendron aralioides HOM05D001848 ORTHO05D001295 5.1e-06 54.7 63 39.7
TAR627G0750 Trochodendron aralioides HOM05D001848 ORTHO05D001295 5.1e-06 54.7 63 39.7
VMungo0720G2320 Vigna mungo HOM05D001848 ORTHO05D001295 5.1e-06 54.7 58 44.8


User provided reference genes

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