Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0605G196 Amborella trichopoda HOM05D004381 ORTHO05D005200 1.1e-232 809.7 430 100.0
Os02g0196000 Oryza sativa ssp. japonica HOM05D004381 ORTHO05D005200 9.6e-112 407.9 264 85.6
Oeu035739.1 Olea europaea HOM05D004381 ORTHO05D005200 1.8e-110 403.7 268 85.1
Manes.06G166500 Manihot esculenta HOM05D004381 ORTHO05D005200 4.0e-110 402.5 265 86.0
Cfa009743 Carpinus fangiana HOM05D004381 ORTHO05D005200 1.2e-109 401.0 264 86.0
Aqoxy7G00799 Aquilegia oxysepala HOM05D004381 ORTHO05D005200 1.5e-109 400.6 263 84.8
Thecc.09G228300 Theobroma cacao HOM05D004381 ORTHO05D005200 5.8e-109 398.7 264 86.0
CANSAT35G1357 Cannabis sativa HOM05D004381 ORTHO05D005200 7.6e-109 398.3 264 84.5
Potri.001G018800 Populus trichocarpa HOM05D004381 ORTHO05D005200 9.9e-109 397.9 264 84.8
CiPaw.14G121000 Carya illinoinensis HOM05D004381 ORTHO05D005200 1.3e-108 397.5 264 84.5
Prupe.6G023700 Prunus persica HOM05D004381 ORTHO05D005200 1.3e-108 397.5 264 84.1
CSS0020783 Camellia sinensis var. sinensis HOM05D004381 ORTHO05D005200 1.7e-108 397.1 264 84.1
Gohir.A08G013200 Gossypium hirsutum HOM05D004381 ORTHO05D005200 3.8e-108 396.0 264 85.2
Gorai.004G018900 Gossypium raimondii HOM05D004381 ORTHO05D005200 3.8e-108 396.0 265 85.3
TAR623G1292 Trochodendron aralioides HOM05D004381 ORTHO05D005200 3.8e-108 396.0 264 84.8
MELO3C014607.2 Cucumis melo HOM05D004381 ORTHO05D005200 4.9e-108 395.6 263 85.2
Ciclev10016213m.g Citrus clementina HOM05D004381 ORTHO05D005200 8.4e-108 394.8 264 84.1
Cc06_g22560 Coffea canephora HOM05D004381 ORTHO05D005200 1.1e-107 394.4 264 83.7
Migut.D00582 Erythranthe guttata HOM05D004381 ORTHO05D005200 1.4e-107 394.0 278 80.6
TPR.G6819 Trifolium pratense HOM05D004381 ORTHO05D005200 1.4e-107 394.0 264 83.7
Gohir.D08G023600 Gossypium hirsutum HOM05D004381 ORTHO05D005200 1.9e-107 393.7 265 84.9
QL01p005255 Quercus lobata HOM05D004381 ORTHO05D005200 1.9e-107 393.7 262 84.0
Hund22064 Selenicereus undatus HOM05D004381 ORTHO05D005200 1.9e-107 393.7 264 84.5
MSTRG.21391 Avicennia marina HOM05D004381 ORTHO05D005200 2.4e-107 393.3 264 84.5
FvH4_3g43050 Fragaria vesca HOM05D004381 ORTHO05D005200 2.4e-107 393.3 264 83.7
FAN11G3745 Fragaria x ananassa HOM05D004381 ORTHO05D005200 2.4e-107 393.3 264 83.7
Atru.chr3.2598 Acer truncatum HOM05D004381 ORTHO05D005200 3.2e-107 392.9 264 84.8
Ca_01288_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 3.2e-107 392.9 277 79.8
COL.COLO4_24848 Corchorus olitorius HOM05D004381 ORTHO05D005200 4.2e-107 392.5 264 83.3
FAN21G3999 Fragaria x ananassa HOM05D004381 ORTHO05D005200 4.2e-107 392.5 264 83.3
Rhsim13G0223600 Rhododendron simsii HOM05D004381 ORTHO05D005200 4.2e-107 392.5 264 84.1
Duzib150G0594 Durio zibethinus HOM05D004381 ORTHO05D005200 7.1e-107 391.7 277 80.5
FAN16G2672 Fragaria x ananassa HOM05D004381 ORTHO05D005200 7.1e-107 391.7 264 83.3
RcHm_v2.0_Chr5g0077111 Rosa chinensis HOM05D004381 ORTHO05D005200 7.1e-107 391.7 264 83.0
Phvul.L011443 Phaseolus vulgaris HOM05D004381 ORTHO05D005200 1.6e-106 390.6 272 81.6
Lj3g0004330 Lotus japonicus HOM05D004381 ORTHO05D005200 2.7e-106 389.8 264 83.3
HPP92_020510 Vanilla planifolia HOM05D004381 ORTHO05D005200 2.7e-106 389.8 262 83.6
MSTRG.18417 Avicennia marina HOM05D004381 ORTHO05D005200 3.5e-106 389.4 264 83.7
Lalb_Chr22g0352331 Lupinus albus HOM05D004381 ORTHO05D005200 3.5e-106 389.4 277 79.8
Glyma.13G340900 Glycine max HOM05D004381 ORTHO05D005200 4.6e-106 389.0 272 81.2
Sed0000340 Sechium edule HOM05D004381 ORTHO05D005200 4.6e-106 389.0 263 83.7
Sp3g18900 Schrenkiella parvula HOM05D004381 ORTHO05D005200 7.8e-106 388.3 264 82.2
CiPaw.13G163200 Carya illinoinensis HOM05D004381 ORTHO05D005200 1.0e-105 387.9 264 82.6
Eucgr.J00789 Eucalyptus grandis HOM05D004381 ORTHO05D005200 1.0e-105 387.9 264 82.6
THA.LOC104817902 Tarenaya hassleriana HOM05D004381 ORTHO05D005200 1.0e-105 387.9 264 84.1
A05p27840 Brassica napus HOM05D004381 ORTHO05D005200 1.3e-105 387.5 264 82.2
BraA05t21671Z Brassica rapa HOM05D004381 ORTHO05D005200 1.3e-105 387.5 264 82.2
Glyma.15G033500 Glycine max HOM05D004381 ORTHO05D005200 1.3e-105 387.5 272 81.2
HanXRQChr02g0056281 Helianthus annuus HOM05D004381 ORTHO05D005200 1.3e-105 387.5 264 82.2
Migut.O00580 Erythranthe guttata HOM05D004381 ORTHO05D005200 2.3e-105 386.7 262 82.8
Lsat_1_v5_gn_6_48200 Lactuca sativa HOM05D004381 ORTHO05D005200 3.0e-105 386.3 264 81.8
MD11G1029400 Malus domestica HOM05D004381 ORTHO05D005200 3.0e-105 386.3 261 83.5
Nn2g15439 Nelumbo nucifera HOM05D004381 ORTHO05D005200 3.0e-105 386.3 263 81.4
Solyc11g062020.2 Solanum lycopersicum HOM05D004381 ORTHO05D005200 3.0e-105 386.3 264 81.8
Sopen11g023990 Solanum pennellii HOM05D004381 ORTHO05D005200 3.0e-105 386.3 264 81.8
MBI04_g13625_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 5.1e-105 385.6 263 83.3
Medtr2g098150 Medicago truncatula HOM05D004381 ORTHO05D005200 5.1e-105 385.6 278 79.5
Thhalv10021300m.g Eutrema salsugineum HOM05D004381 ORTHO05D005200 6.6e-105 385.2 264 80.7
Ah.06g193660 Amaranthus hybridus HOM05D004381 ORTHO05D005200 8.7e-105 384.8 265 81.1
C05p43180 Brassica napus HOM05D004381 ORTHO05D005200 1.1e-104 384.4 265 81.5
BolC5t33048H Brassica oleracea HOM05D004381 ORTHO05D005200 1.1e-104 384.4 265 81.5
GSVIVG01025302001 Vitis vinifera HOM05D004381 ORTHO05D005200 1.5e-104 384.0 264 83.0
ECA233G0542 Erigeron canadensis HOM05D004381 ORTHO05D005200 2.5e-104 383.3 264 80.7
Peaxi162Scf00029g02914 Petunia axillaris HOM05D004381 ORTHO05D005200 4.3e-104 382.5 272 79.0
PSO210G6888 Papaver somniferum HOM05D004381 ORTHO05D005200 5.6e-104 382.1 264 81.1
AL3G34820 Arabidopsis lyrata HOM05D004381 ORTHO05D005200 7.3e-104 381.7 264 80.3
Potri.003G205100 Populus trichocarpa HOM05D004381 ORTHO05D005200 7.3e-104 381.7 264 81.8
EL10Ac4g10297 Beta vulgaris HOM05D004381 ORTHO05D005200 1.6e-103 380.6 272 79.8
Nitab4.5_0002026g0030 Nicotiana tabacum HOM05D004381 ORTHO05D005200 2.1e-103 380.2 263 80.6
DCAR_031567 Daucus carota HOM05D004381 ORTHO05D005200 2.8e-103 379.8 264 81.1
PSO210G5188 Papaver somniferum HOM05D004381 ORTHO05D005200 2.8e-103 379.8 264 80.7
SEGI_07837 Sequoiadendron giganteum HOM05D004381 ORTHO05D005200 3.6e-103 379.4 265 78.9
Nitab4.5_0000492g0060 Nicotiana tabacum HOM05D004381 ORTHO05D005200 4.8e-103 379.0 263 80.2
AT3G20870 Arabidopsis thaliana HOM05D004381 ORTHO05D005200 6.2e-103 378.6 264 79.5
AUR62000098 Chenopodium quinoa HOM05D004381 ORTHO05D005200 6.2e-103 378.6 271 79.7
MBI01_g27615_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 1.1e-102 377.9 347 63.7
MD03G1024300 Malus domestica HOM05D004381 ORTHO05D005200 1.1e-102 377.9 261 82.8
TWI60G0262 Tripterygium wilfordii HOM05D004381 ORTHO05D005200 1.1e-102 377.9 263 81.4
ClCG02G023360 Citrullus lanatus HOM05D004381 ORTHO05D005200 1.4e-102 377.5 256 83.6
CAN.G71.8 Capsicum annuum HOM05D004381 ORTHO05D005200 3.1e-102 376.3 270 78.5
Aa31LG8G7690 Aethionema arabicum HOM05D004381 ORTHO05D005200 5.3e-102 375.6 264 81.1
VMungo1080G0554 Vigna mungo HOM05D004381 ORTHO05D005200 9.0e-102 374.8 296 74.7
Sabra01G0013400 Salix brachista HOM05D004381 ORTHO05D005200 3.4e-101 372.9 308 72.4
arahy.Tifrunner.gnm1.ann1.LPI13M Arachis hypogaea HOM05D004381 ORTHO05D005200 7.6e-101 371.7 261 81.6
CARHR096750 Cardamine hirsuta HOM05D004381 ORTHO05D005200 1.7e-100 370.5 264 79.5
arahy.Tifrunner.gnm1.ann1.E88S00 Arachis hypogaea HOM05D004381 ORTHO05D005200 2.9e-100 369.8 314 70.1
Haze_23102 Corylus avellana HOM05D004381 ORTHO05D005200 1.9e-99 367.1 264 77.3
AUR62019272 Chenopodium quinoa HOM05D004381 ORTHO05D005200 6.0e-98 362.1 271 73.1
Phvul.011G058500 Phaseolus vulgaris HOM05D004381 ORTHO05D005200 5.1e-97 359.0 265 76.6
Carub.0003s2085 Capsella rubella HOM05D004381 ORTHO05D005200 1.5e-96 357.5 264 76.5
Actinidia16315 Actinidia chinensis HOM05D004381 ORTHO05D005200 2.5e-96 356.7 310 66.5
Lalb_Chr19g0138141 Lupinus albus HOM05D004381 ORTHO05D005200 2.5e-96 356.7 265 76.2
Sabra03G0151600 Salix brachista HOM05D004381 ORTHO05D005200 5.6e-96 355.5 305 68.5
SGA_v2.0_scaffold247G44855 Striga asiatica HOM05D004381 ORTHO05D005200 5.6e-96 355.5 284 69.7
BcaC05g28200 Brassica carinata HOM05D004381 ORTHO05D005200 7.4e-96 355.1 264 72.7
Psat7g213080 Pisum sativum HOM05D004381 ORTHO05D005200 9.6e-96 354.8 262 76.0
MSTRG.21390 Avicennia marina HOM05D004381 ORTHO05D005200 1.3e-95 354.4 264 76.9
Nn7g36163 Nelumbo nucifera HOM05D004381 ORTHO05D005200 6.2e-95 352.1 265 77.7
CDE10G0019 Ceratophyllum demersum HOM05D004381 ORTHO05D005200 8.1e-95 351.7 245 80.4
Medtr4g065640 Medicago truncatula HOM05D004381 ORTHO05D005200 1.8e-94 350.5 261 75.9
vmacro04193 Vaccinium macrocarpon HOM05D004381 ORTHO05D005200 2.4e-94 350.1 258 78.3
Zm00001eb205960 Zea mays HOM05D004381 ORTHO05D005200 2.4e-94 350.1 281 73.0
VMungo1127G1882 Vigna mungo HOM05D004381 ORTHO05D005200 3.1e-94 349.7 273 73.3
Lj3g0009499 Lotus japonicus HOM05D004381 ORTHO05D005200 1.5e-93 347.4 265 74.7
Zm00001eb213530 Zea mays HOM05D004381 ORTHO05D005200 7.9e-90 335.1 261 67.8
Dinv08032 Davidia involucrata HOM05D004381 ORTHO05D005200 1.3e-87 327.8 224 83.9
arahy.Tifrunner.gnm1.ann1.T21L4I Arachis hypogaea HOM05D004381 ORTHO05D005200 4.8e-87 325.9 329 63.5
CsaV3_4G024140 Cucumis sativus L. HOM05D004381 ORTHO05D005200 6.2e-87 325.5 216 84.7
SMO347G0569 Selaginella moellendorffii HOM05D004381 ORTHO05D005200 1.1e-86 324.7 259 69.5
Sc06g0004510 Simmondsia chinensis HOM05D004381 ORTHO05D005200 9.0e-86 321.6 224 81.7
Duzib168G0673 Durio zibethinus HOM05D004381 ORTHO05D005200 2.5e-83 313.5 217 81.6
Mapoly0039s0091 Marchantia polymorpha HOM05D004381 ORTHO05D005200 2.5e-83 313.5 272 66.2
Lj1A348T17 Lonicera japonica HOM05D004381 ORTHO05D005200 7.4e-80 302.0 226 79.6
AagrBONN_evm.TU.Sc2ySwM_362.691 Anthoceros agrestis HOM05D004381 ORTHO05D005200 3.7e-79 299.7 267 64.4
Ca_20572_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 4.8e-79 299.3 235 73.6
Ca_30507_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 4.8e-79 299.3 235 73.6
Pp3c16_16530 Physcomitrium patens HOM05D004381 ORTHO05D005200 6.9e-78 295.4 269 63.2
Glyma.11G132500 Glycine max HOM05D004381 ORTHO05D005200 2.1e-74 283.9 261 60.5
FAN25G0848 Fragaria x ananassa HOM05D004381 ORTHO05D005200 4.6e-74 282.7 298 61.4
arahy.Tifrunner.gnm1.ann1.BUZ3KN Arachis hypogaea HOM05D004381 ORTHO05D005200 1.0e-73 281.6 272 64.3
arahy.Tifrunner.gnm1.ann1.N626J4 Arachis hypogaea HOM05D004381 ORTHO05D005200 1.1e-72 278.1 272 64.0
Os08g0100200 Oryza sativa ssp. japonica HOM05D004381 ORTHO05D005200 3.1e-70 270.0 274 56.2
Glyma.12G056900 Glycine max HOM05D004381 ORTHO05D005200 2.2e-63 247.3 187 74.9
arahy.Tifrunner.gnm1.ann1.H592TP Arachis hypogaea HOM05D004381 ORTHO05D005200 1.2e-61 241.5 303 51.8
HanXRQChr17g0534131 Helianthus annuus HOM05D004381 ORTHO05D005200 2.7e-58 230.3 253 55.3
unitig_26.g10133 Utricularia gibba HOM05D004381 ORTHO05D005200 1.3e-55 221.5 155 72.3
TPR.G39903 Trifolium pratense HOM05D004381 ORTHO05D005200 3.1e-54 216.9 181 71.8
Psat1g173960 Pisum sativum HOM05D004381 ORTHO05D005200 1.5e-48 198.0 147 78.2
Dinv36273 Davidia involucrata HOM05D004381 ORTHO05D005200 2.0e-48 197.6 123 85.4
Dinv36275 Davidia involucrata HOM05D004381 ORTHO05D005200 1.3e-47 194.9 129 79.1
Cpa.g.sc84.75 Carica papaya HOM05D004381 ORTHO05D005200 2.7e-45 187.2 117 84.6
Cre03.g189550 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 4.7e-42 176.4 297 43.4
Oeu052046.2 Olea europaea HOM05D004381 ORTHO05D005200 2.8e-39 167.2 92 93.5
TPR.G35036 Trifolium pratense HOM05D004381 ORTHO05D005200 9.5e-35 152.1 91 85.7
Hma1.2p1_0118F.1_g056480 Hydrangea macrophylla HOM05D004381 ORTHO05D005200 6.1e-34 149.4 81 92.6
Psat5g287120 Pisum sativum HOM05D004381 ORTHO05D005200 4.0e-33 146.7 95 82.1
Rhsim13G0223400 Rhododendron simsii HOM05D004381 ORTHO05D005200 3.6e-26 123.6 75 80.0
TWI34G1572 Tripterygium wilfordii HOM05D004381 ORTHO05D005200 6.8e-25 119.4 96 68.8
unitig_26.g10132 Utricularia gibba HOM05D004381 ORTHO05D005200 2.0e-21 107.8 78 73.1
Gohir.D11G292000 Gossypium hirsutum HOM05D004381 ORTHO05D005200 1.0e-20 105.5 59 91.5
Gorai.007G316100 Gossypium raimondii HOM05D004381 ORTHO05D005200 1.0e-20 105.5 59 91.5
CBR_g19660 Chara braunii HOM05D004381 ORTHO05D005200 2.5e-19 100.9 157 46.5
arahy.Tifrunner.gnm1.ann1.9W75VL Arachis hypogaea HOM05D004381 ORTHO05D005200 9.5e-19 99.0 104 58.7
MCO07G525 Micromonas commoda HOM05D004381 ORTHO05D005200 2.8e-18 97.4 251 33.1
CBR_g37790 Chara braunii HOM05D004381 ORTHO05D005200 8.1e-18 95.9 172 42.4
CBR_g35021 Chara braunii HOM05D004381 ORTHO05D005200 3.1e-17 94.0 150 41.3
arahy.Tifrunner.gnm1.ann1.XL2GL1 Arachis hypogaea HOM05D004381 ORTHO05D005200 1.2e-16 92.0 73 80.8
PRCOL_00002167 Prasinoderma coloniale HOM05D004381 ORTHO05D005200 1.5e-16 91.7 171 38.6
CBR_g37792 Chara braunii HOM05D004381 ORTHO05D005200 3.4e-16 90.5 157 41.4
Psat5g287160 Pisum sativum HOM05D004381 ORTHO05D005200 4.4e-16 90.1 73 69.9
arahy.Tifrunner.gnm1.ann1.0JWP28 Arachis hypogaea HOM05D004381 ORTHO05D005200 3.7e-15 87.0 73 74.0
Glyma.08G063100 Glycine max HOM05D004381 ORTHO05D005200 3.7e-15 87.0 57 75.4
Cre01.g066187 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 5.4e-14 83.2 161 35.4
MCO07G169 Micromonas commoda HOM05D004381 ORTHO05D005200 1.2e-13 82.0 158 40.5
TAR369G0770 Trochodendron aralioides HOM05D004381 ORTHO05D005200 1.2e-13 82.0 150 39.3
arahy.Tifrunner.gnm1.ann1.W9WT0A Arachis hypogaea HOM05D000602 ORTHO05D011536 1.7e-12 78.2 52 75.0
arahy.Tifrunner.gnm1.ann1.T6H5I3 Arachis hypogaea HOM05D004381 ORTHO05D005200 1.5e-11 75.1 46 80.4
MBI09_g41969_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 2.1e-10 71.2 65 64.6
TPR.G33171 Trifolium pratense HOM05D004381 ORTHO05D005200 1.4e-09 68.6 43 79.1
Cre12.g530350 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 9.9e-08 62.4 153 35.9
Cre12.g530400 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 1.1e-06 58.9 158 32.3
Cre09.g392060 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 7.1e-06 56.2 143 38.5


User provided reference genes

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