Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0605G163 Amborella trichopoda HOM05D006205 ORTHO05D007703 5.1e-215 750.7 364 100.0
TAR623G1003 Trochodendron aralioides HOM05D006205 ORTHO05D007703 1.4e-183 646.4 358 85.5
arahy.Tifrunner.gnm1.ann1.ARGW3J Arachis hypogaea HOM05D006205 ORTHO05D007703 9.1e-180 633.6 353 84.4
CSS0013544 Camellia sinensis var. sinensis HOM05D006205 ORTHO05D007703 9.1e-180 633.6 357 83.8
Ca_08497_v3 Cicer arietinum L. HOM05D006205 ORTHO05D007703 1.2e-179 633.3 357 84.0
Ca_29722_v3 Cicer arietinum L. HOM05D006205 ORTHO05D007703 1.2e-179 633.3 357 84.0
Glyma.19G144900 Glycine max HOM05D006205 ORTHO05D007703 1.2e-179 633.3 357 84.0
arahy.Tifrunner.gnm1.ann1.68EW5P Arachis hypogaea HOM05D006205 ORTHO05D007703 2.0e-179 632.5 353 84.1
PGR142G1368 Punica granatum HOM05D006205 ORTHO05D007703 2.0e-179 632.5 357 83.2
Eucgr.K01821 Eucalyptus grandis HOM05D006205 ORTHO05D007703 5.9e-179 630.9 357 83.5
Actinidia17259 Actinidia chinensis HOM05D006205 ORTHO05D007703 1.0e-178 630.2 357 83.2
Manes.09G031300 Manihot esculenta HOM05D006205 ORTHO05D007703 6.5e-178 627.5 357 82.4
Nn2g15532 Nelumbo nucifera HOM05D006205 ORTHO05D007703 1.1e-177 626.7 356 83.7
DCAR_013564 Daucus carota HOM05D006205 ORTHO05D007703 1.4e-177 626.3 357 82.9
Gorai.002G228500 Gossypium raimondii HOM05D006205 ORTHO05D007703 1.9e-177 625.9 357 81.2
Hma1.2p1_1575F.1_g291620 Hydrangea macrophylla HOM05D006205 ORTHO05D007703 1.9e-177 625.9 357 81.8
Gohir.A01G194800 Gossypium hirsutum HOM05D006205 ORTHO05D007703 2.5e-177 625.5 357 81.2
CiPaw.09G032800 Carya illinoinensis HOM05D006205 ORTHO05D007703 3.2e-177 625.2 357 82.9
Haze_19942 Corylus avellana HOM05D006205 ORTHO05D007703 3.2e-177 625.2 358 82.4
Lalb_Chr18g0047621 Lupinus albus HOM05D006205 ORTHO05D007703 3.2e-177 625.2 356 82.9
Dinv24098 Davidia involucrata HOM05D006205 ORTHO05D007703 4.2e-177 624.8 357 82.1
Duzib106G0917 Durio zibethinus HOM05D006205 ORTHO05D007703 4.2e-177 624.8 357 81.8
Potri.016G049700 Populus trichocarpa HOM05D006205 ORTHO05D007703 7.2e-177 624.0 358 81.8
Phvul.001G139800 Phaseolus vulgaris HOM05D006205 ORTHO05D007703 9.4e-177 623.6 357 82.4
Ciclev10031918m.g Citrus clementina HOM05D006205 ORTHO05D007703 1.6e-176 622.9 357 82.6
Thecc.05G167100 Theobroma cacao HOM05D006205 ORTHO05D007703 1.6e-176 622.9 359 81.3
Sabra16G0053600 Salix brachista HOM05D006205 ORTHO05D007703 3.6e-176 621.7 358 81.0
Cpa.g.sc85.111 Carica papaya HOM05D006205 ORTHO05D007703 1.4e-175 619.8 357 82.6
Gohir.D01G185000 Gossypium hirsutum HOM05D006205 ORTHO05D007703 1.4e-175 619.8 357 80.7
VMungo1383G0076 Vigna mungo HOM05D006205 ORTHO05D007703 2.3e-175 619.0 357 81.0
Potri.006G058400 Populus trichocarpa HOM05D006205 ORTHO05D007703 3.0e-175 618.6 358 80.7
TPR.G4691 Trifolium pratense HOM05D006205 ORTHO05D007703 3.0e-175 618.6 357 81.8
Prupe.7G072500 Prunus persica HOM05D006205 ORTHO05D007703 3.9e-175 618.2 357 81.8
MSTRG.26097 Avicennia marina HOM05D006205 ORTHO05D007703 5.2e-175 617.8 357 81.2
Psat3g069960 Pisum sativum HOM05D006205 ORTHO05D007703 8.8e-175 617.1 357 81.5
Medtr7g092680 Medicago truncatula HOM05D006205 ORTHO05D007703 4.4e-174 614.8 357 81.5
QL07p022686 Quercus lobata HOM05D006205 ORTHO05D007703 5.7e-174 614.4 357 81.8
Lsat_1_v5_gn_8_79241 Lactuca sativa HOM05D006205 ORTHO05D007703 9.7e-174 613.6 357 79.8
Lju124A32T75 Lonicera japonica HOM05D006205 ORTHO05D007703 1.3e-173 613.2 357 81.0
Lj1g0022121 Lotus japonicus HOM05D006205 ORTHO05D007703 1.3e-173 613.2 393 75.6
CANSAT64G2514 Cannabis sativa HOM05D006205 ORTHO05D007703 4.8e-173 611.3 361 79.5
Nitab4.5_0006846g0010 Nicotiana tabacum HOM05D006205 ORTHO05D007703 1.1e-172 610.1 357 80.1
Sed0025317 Sechium edule HOM05D006205 ORTHO05D007703 1.1e-172 610.1 357 81.2
Hund19180 Selenicereus undatus HOM05D006205 ORTHO05D007703 1.1e-172 610.1 357 79.6
SGA_v2.0_scaffold94G28443 Striga asiatica HOM05D006205 ORTHO05D007703 1.1e-172 610.1 359 79.7
Sabra06G0041700 Salix brachista HOM05D006205 ORTHO05D007703 1.8e-172 609.4 358 80.2
Sc25g0005160 Simmondsia chinensis HOM05D006205 ORTHO05D007703 4.1e-172 608.2 353 80.7
vmacro09103 Vaccinium macrocarpon HOM05D006205 ORTHO05D007703 5.3e-172 607.8 367 79.3
Duzib093G1988 Durio zibethinus HOM05D006205 ORTHO05D007703 9.1e-172 607.1 357 78.7
MELO3C009648.2 Cucumis melo HOM05D006205 ORTHO05D007703 1.2e-171 606.7 383 76.5
THA.LOC104809921 Tarenaya hassleriana HOM05D006205 ORTHO05D007703 1.2e-171 606.7 357 79.3
HanXRQChr05g0132791 Helianthus annuus HOM05D006205 ORTHO05D007703 1.6e-171 606.3 358 79.6
PSO384G4504 Papaver somniferum HOM05D006205 ORTHO05D007703 3.5e-171 605.1 357 78.4
Aqoxy1G00212 Aquilegia oxysepala HOM05D006205 ORTHO05D007703 1.0e-170 603.6 357 78.7
CAN.G85.9 Capsicum annuum HOM05D006205 ORTHO05D007703 1.3e-170 603.2 357 78.7
CDE10G0043 Ceratophyllum demersum HOM05D006205 ORTHO05D007703 1.7e-170 602.8 352 80.1
FvH4_6g22800 Fragaria vesca HOM05D006205 ORTHO05D007703 2.2e-170 602.4 355 80.3
FAN02G0014 Fragaria x ananassa HOM05D006205 ORTHO05D007703 2.2e-170 602.4 355 80.3
FAN14G5729 Fragaria x ananassa HOM05D006205 ORTHO05D007703 2.2e-170 602.4 355 80.3
TWI74G1063 Tripterygium wilfordii HOM05D006205 ORTHO05D007703 1.1e-169 600.1 339 83.2
RcHm_v2.0_Chr3g0480421 Rosa chinensis HOM05D006205 ORTHO05D007703 4.2e-169 598.2 355 79.7
EL10Ac3g06974 Beta vulgaris HOM05D006205 ORTHO05D007703 7.2e-169 597.4 358 78.2
Cc06_g16310 Coffea canephora HOM05D006205 ORTHO05D007703 7.2e-169 597.4 357 77.6
PSO339G0108 Papaver somniferum HOM05D006205 ORTHO05D007703 7.2e-169 597.4 361 77.0
FAN05G5560 Fragaria x ananassa HOM05D006205 ORTHO05D007703 1.2e-168 596.7 355 79.7
PGSC0003DMG400012937 Solanum tuberosum HOM05D006205 ORTHO05D007703 1.6e-168 596.3 357 77.9
Migut.K00057 Erythranthe guttata HOM05D006205 ORTHO05D007703 3.0e-167 592.0 357 77.9
Sp3g10390 Schrenkiella parvula HOM05D006205 ORTHO05D007703 6.7e-167 590.9 358 77.9
Solyc03g064030.3 Solanum lycopersicum HOM05D006205 ORTHO05D007703 2.0e-166 589.3 357 77.6
Sopen03g017680 Solanum pennellii HOM05D006205 ORTHO05D007703 2.6e-166 589.0 357 77.3
QL93p2022_0017 Quercus lobata HOM05D006205 ORTHO05D007703 5.7e-166 587.8 415 70.4
ClCG10G017350 Citrullus lanatus HOM05D006205 ORTHO05D007703 7.5e-166 587.4 424 69.1
Thhalv10021002m.g Eutrema salsugineum HOM05D006205 ORTHO05D007703 3.7e-165 585.1 360 76.4
Os02g0195000 Oryza sativa ssp. japonica HOM05D006205 ORTHO05D007703 4.8e-165 584.7 366 73.8
AL3G23830 Arabidopsis lyrata HOM05D006205 ORTHO05D007703 6.3e-165 584.3 358 76.3
Carub.0003s1152 Capsella rubella HOM05D006205 ORTHO05D007703 6.3e-165 584.3 358 76.5
Zm00001eb236370 Zea mays HOM05D006205 ORTHO05D007703 1.4e-164 583.2 366 74.0
AT3G12150 Arabidopsis thaliana HOM05D006205 ORTHO05D007703 1.8e-164 582.8 358 76.5
A05p37150 Brassica napus HOM05D006205 ORTHO05D007703 5.3e-164 581.3 358 76.3
C05p55580 Brassica napus HOM05D006205 ORTHO05D007703 5.3e-164 581.3 358 76.3
BolC5t34227H Brassica oleracea HOM05D006205 ORTHO05D007703 5.3e-164 581.3 358 76.3
BcaC05g29277 Brassica carinata HOM05D006205 ORTHO05D007703 7.0e-164 580.9 358 76.0
SalBow1G2518 Salvia bowleyana HOM05D006205 ORTHO05D007703 9.1e-164 580.5 399 70.7
AUR62024356 Chenopodium quinoa HOM05D006205 ORTHO05D007703 2.0e-163 579.3 353 76.5
BraA05t22513Z Brassica rapa HOM05D006205 ORTHO05D007703 1.0e-162 577.0 358 75.4
SEGI_33856 Sequoiadendron giganteum HOM05D006205 ORTHO05D007703 1.3e-162 576.6 356 76.1
Aa31LG3G6360 Aethionema arabicum HOM05D006205 ORTHO05D007703 9.4e-161 570.5 386 71.0
BraA03t12906Z Brassica rapa HOM05D006205 ORTHO05D007703 1.6e-160 569.7 362 74.3
BcaC01g04062 Brassica carinata HOM05D006205 ORTHO05D007703 6.1e-160 567.8 358 74.9
A03p37470 Brassica napus HOM05D006205 ORTHO05D007703 1.4e-159 566.6 358 74.6
C03p45470 Brassica napus HOM05D006205 ORTHO05D007703 1.4e-159 566.6 363 73.8
BolC3t16816H Brassica oleracea HOM05D006205 ORTHO05D007703 4.0e-159 565.1 363 73.6
unitig_899.g15081 Utricularia gibba HOM05D006205 ORTHO05D007703 3.4e-158 562.0 355 75.8
AUR62025960 Chenopodium quinoa HOM05D006205 ORTHO05D007703 3.7e-157 558.5 356 74.2
GSVIVG01033369001 Vitis vinifera HOM05D006205 ORTHO05D007703 1.6e-152 543.1 312 83.0
ECA236G0538 Erigeron canadensis HOM05D006205 ORTHO05D007703 9.2e-148 527.3 312 80.1
SMO334G0020 Selaginella moellendorffii HOM05D006205 ORTHO05D007703 1.3e-146 523.5 356 70.2
BcaB04g18694 Brassica carinata HOM05D006205 ORTHO05D007703 5.6e-145 518.1 335 73.7
Cfa016888 Carpinus fangiana HOM05D006205 ORTHO05D007703 5.6e-145 518.1 302 81.1
Mapoly0096s0035 Marchantia polymorpha HOM05D006205 ORTHO05D007703 2.8e-144 515.8 356 68.3
Nitab4.5_0000016g0140 Nicotiana tabacum HOM05D006205 ORTHO05D007703 1.8e-143 513.1 357 69.2
MD12G1062300 Malus domestica HOM05D006205 ORTHO05D007703 4.4e-142 508.4 306 80.1
Pp3c3_27370 Physcomitrium patens HOM05D006205 ORTHO05D007703 3.7e-141 505.4 356 68.0
AagrBONN_evm.TU.Sc2ySwM_228.3151 Anthoceros agrestis HOM05D006205 ORTHO05D007703 1.2e-139 500.4 358 67.9
Rhsim04G0098500 Rhododendron simsii HOM05D006205 ORTHO05D007703 2.5e-137 492.7 403 62.0
Ah.13g076130 Amaranthus hybridus HOM05D006205 ORTHO05D007703 1.5e-129 466.8 348 67.0
CBR_g25855 Chara braunii HOM05D006205 ORTHO05D007703 4.0e-127 458.8 368 61.4
CsaV3_3G039050 Cucumis sativus L. HOM05D006205 ORTHO05D007703 7.3e-121 438.0 247 86.2
COL.COLO4_36119 Corchorus olitorius HOM05D006205 ORTHO05D007703 9.9e-118 427.6 240 87.1
Peaxi162Scf00285g00443 Petunia axillaris HOM05D006205 ORTHO05D007703 1.3e-117 427.2 357 62.5
SalBow1G2557 Salvia bowleyana HOM05D006205 ORTHO05D007703 6.4e-117 424.9 363 60.6
HPP92_023778 Vanilla planifolia HOM05D006205 ORTHO05D007703 1.3e-112 410.6 235 82.6
Dinv18116 Davidia involucrata HOM05D006205 ORTHO05D007703 5.8e-102 375.2 211 80.1
CARHR086730 Cardamine hirsuta HOM05D006205 ORTHO05D007703 4.9e-93 345.5 204 81.9
Glyma.02G176500 Glycine max HOM05D006205 ORTHO05D007703 1.1e-71 274.6 164 81.7
MBI04_g47239_MAGBIO Magnolia biondii HOM05D006205 ORTHO05D007703 2.0e-70 270.4 152 80.3
MBI04_g14269_MAGBIO Magnolia biondii HOM05D006205 ORTHO05D007703 3.3e-65 253.1 161 74.5
Actinidia33641 Actinidia chinensis HOM05D006205 ORTHO05D007703 3.2e-52 209.9 119 74.8
MD14G1062900 Malus domestica HOM05D006205 ORTHO05D007703 1.4e-50 204.5 126 72.2
Cre02.g076150 Chlamydomonas reinhardtii HOM05D006205 ORTHO05D007703 7.2e-44 182.2 344 36.0
MD14G1062700 Malus domestica HOM05D006205 ORTHO05D007703 5.4e-39 166.0 202 47.5
VMungo1080G0431 Vigna mungo HOM05D006205 ORTHO05D007703 3.3e-36 156.8 98 79.6
arahy.Tifrunner.gnm1.ann1.EV0IJD Arachis hypogaea HOM05D006205 ORTHO05D007703 2.9e-32 143.7 117 63.2
MD12G1062200 Malus domestica HOM05D006205 ORTHO05D007703 6.6e-21 105.9 55 87.3
VMungo0331G0486 Vigna mungo HOM05D006205 ORTHO05D007703 8.9e-18 95.5 107 50.5
Medtr0001s0010 Medicago truncatula HOM05D006205 ORTHO05D007703 2.0e-17 94.4 79 62.0
Glyma.02G176400 Glycine max HOM05D006205 ORTHO05D007703 5.4e-15 86.3 47 76.6
Rhsim04G0098400 Rhododendron simsii HOM05D000259 ORTHO05D000155 7.1e-15 85.9 39 92.3
BcaC01g04094 Brassica carinata HOM05D001227 ORTHO05D001082 2.1e-11 74.3 162 34.6
MCO07G325 Micromonas commoda HOM05D006205 ORTHO05D007703 1.4e-07 61.6 266 26.7


User provided reference genes

Program Settings