Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0605G139 Amborella trichopoda HOM05D000443 ORTHO05D006935 2.1e-45 185.7 118 100.0
DCAR_003345 Daucus carota HOM05D000443 ORTHO05D006935 4.0e-44 181.4 118 96.6
Oeu029869.1 Olea europaea HOM05D000443 ORTHO05D006935 4.0e-44 181.4 118 97.5
arahy.Tifrunner.gnm1.ann1.8Z4KFF Arachis hypogaea HOM05D000443 ORTHO05D006935 6.8e-44 180.6 118 96.6
arahy.Tifrunner.gnm1.ann1.X2RL59 Arachis hypogaea HOM05D000443 ORTHO05D006935 6.8e-44 180.6 118 96.6
MSTRG.10170 Avicennia marina HOM05D000443 ORTHO05D006935 6.8e-44 180.6 118 96.6
Migut.G00035 Erythranthe guttata HOM05D000443 ORTHO05D006935 6.8e-44 180.6 118 96.6
arahy.Tifrunner.gnm1.ann1.KHE34K Arachis hypogaea HOM05D000443 ORTHO05D006935 1.5e-43 179.5 118 95.8
arahy.Tifrunner.gnm1.ann1.R1M58Z Arachis hypogaea HOM05D000443 ORTHO05D006935 1.5e-43 179.5 118 95.8
CDE05G1952 Ceratophyllum demersum HOM05D000443 ORTHO05D006935 1.5e-43 179.5 118 95.8
HanXRQChr02g0047201 Helianthus annuus HOM05D000443 ORTHO05D006935 1.5e-43 179.5 118 95.8
THA.LOC104807412 Tarenaya hassleriana HOM05D000443 ORTHO05D006935 1.5e-43 179.5 118 95.8
A06p34070 Brassica napus HOM05D000443 ORTHO05D006935 2.0e-43 179.1 118 96.6
BraA06t26340Z Brassica rapa HOM05D000443 ORTHO05D006935 2.0e-43 179.1 118 96.6
Cc11_g00630 Coffea canephora HOM05D000443 ORTHO05D006935 2.0e-43 179.1 118 95.8
Oeu022728.1 Olea europaea HOM05D000443 ORTHO05D006935 2.0e-43 179.1 118 92.4
Os08g0511800 Oryza sativa ssp. japonica HOM05D000443 ORTHO05D006935 2.0e-43 179.1 118 95.8
Aa31LG8G14690 Aethionema arabicum HOM05D000443 ORTHO05D006935 2.6e-43 178.7 118 96.6
AL3G50230 Arabidopsis lyrata HOM05D000443 ORTHO05D006935 2.6e-43 178.7 118 96.6
AT2G17350 Arabidopsis thaliana HOM05D000443 ORTHO05D006935 2.6e-43 178.7 118 96.6
BcaB03g16486 Brassica carinata HOM05D000443 ORTHO05D006935 2.6e-43 178.7 118 96.6
BcaB08g34724 Brassica carinata HOM05D000443 ORTHO05D006935 2.6e-43 178.7 118 96.6
BcaC01g02933 Brassica carinata HOM05D000443 ORTHO05D006935 2.6e-43 178.7 118 96.6
A07p03730 Brassica napus HOM05D000443 ORTHO05D006935 2.6e-43 178.7 118 96.6
C03p58190 Brassica napus HOM05D000443 ORTHO05D006935 2.6e-43 178.7 118 96.6
BolC3t18088H Brassica oleracea HOM05D000443 ORTHO05D006935 2.6e-43 178.7 118 96.6
BraA07t28161Z Brassica rapa HOM05D000443 ORTHO05D006935 2.6e-43 178.7 118 96.6
Carub.0003s3138 Capsella rubella HOM05D000443 ORTHO05D006935 2.6e-43 178.7 118 96.6
CARHR107480 Cardamine hirsuta HOM05D000443 ORTHO05D006935 2.6e-43 178.7 118 96.6
Dinv41862 Davidia involucrata HOM05D000443 ORTHO05D006935 2.6e-43 178.7 118 94.9
ECA234G1622 Erigeron canadensis HOM05D000443 ORTHO05D006935 2.6e-43 178.7 118 94.9
Thhalv10022914m.g Eutrema salsugineum HOM05D000443 ORTHO05D006935 2.6e-43 178.7 118 96.6
Sp3g30670 Schrenkiella parvula HOM05D000443 ORTHO05D006935 2.6e-43 178.7 118 96.6
Actinidia17989 Actinidia chinensis HOM05D000443 ORTHO05D006935 3.4e-43 178.3 118 94.9
Actinidia20580 Actinidia chinensis HOM05D000443 ORTHO05D006935 3.4e-43 178.3 118 94.9
Lj4g0010337 Lotus japonicus HOM05D000443 ORTHO05D006935 3.4e-43 178.3 118 92.4
Nitab4.5_0000303g0260 Nicotiana tabacum HOM05D000443 ORTHO05D001066 3.4e-43 178.3 118 94.9
Peaxi162Scf00268g00613 Petunia axillaris HOM05D000443 ORTHO05D006935 3.4e-43 178.3 118 94.9
Hund00097 Selenicereus undatus HOM05D000443 ORTHO05D006935 3.4e-43 178.3 118 94.9
Solyc06g065200.4 Solanum lycopersicum HOM05D000443 ORTHO05D006935 3.4e-43 178.3 118 94.9
Sopen06g023700 Solanum pennellii HOM05D000443 ORTHO05D006935 3.4e-43 178.3 118 94.9
PGSC0003DMG400026106 Solanum tuberosum HOM05D000443 ORTHO05D006935 3.4e-43 178.3 118 94.9
Glyma.08G289600 Glycine max HOM05D000443 ORTHO05D006935 4.4e-43 177.9 118 91.5
Glyma.18G134900 Glycine max HOM05D000443 ORTHO05D006935 4.4e-43 177.9 118 91.5
Phvul.003G053800 Phaseolus vulgaris HOM05D000443 ORTHO05D006935 4.4e-43 177.9 118 91.5
VMungo0720G1325 Vigna mungo HOM05D000443 ORTHO05D006935 4.4e-43 177.9 118 91.5
Sc08g0002080 Simmondsia chinensis HOM05D000443 ORTHO05D006935 7.5e-43 177.2 118 94.9
Ah.01g010320 Amaranthus hybridus HOM05D000443 ORTHO05D006935 9.8e-43 176.8 118 94.9
EL10Ac9g21552 Beta vulgaris HOM05D000443 ORTHO05D006935 9.8e-43 176.8 118 94.9
BcaC06g36255 Brassica carinata HOM05D000443 ORTHO05D006935 9.8e-43 176.8 118 95.8
BolC7t41006H Brassica oleracea HOM05D000443 ORTHO05D006935 9.8e-43 176.8 118 95.8
AUR62010188 Chenopodium quinoa HOM05D000443 ORTHO05D006935 9.8e-43 176.8 118 94.9
AUR62013189 Chenopodium quinoa HOM05D000443 ORTHO05D006935 9.8e-43 176.8 118 94.9
FAN15G1278 Fragaria x ananassa HOM05D000443 ORTHO05D006935 9.8e-43 176.8 118 94.1
FAN24G1683 Fragaria x ananassa HOM05D000443 ORTHO05D006935 9.8e-43 176.8 118 94.1
FAN27G0741 Fragaria x ananassa HOM05D000443 ORTHO05D006935 9.8e-43 176.8 118 94.1
Lsat_1_v5_gn_4_71260 Lactuca sativa HOM05D000443 ORTHO05D006935 9.8e-43 176.8 118 94.1
MD10G1142700 Malus domestica HOM05D000443 ORTHO05D006935 9.8e-43 176.8 118 94.1
SGA_v2.0_scaffold157G37346 Striga asiatica HOM05D000443 ORTHO05D006935 9.8e-43 176.8 118 94.9
CAN.G308.68 Capsicum annuum HOM05D000443 ORTHO05D006935 1.3e-42 176.4 118 94.1
CiPaw.05G094300 Carya illinoinensis HOM05D000443 ORTHO05D006935 1.3e-42 176.4 118 94.1
Prupe.8G181600 Prunus persica HOM05D000443 ORTHO05D006935 1.3e-42 176.4 118 94.1
Lsat_1_v5_gn_8_120620 Lactuca sativa HOM05D000443 ORTHO05D006935 2.2e-42 175.6 118 87.3
CSS0021137 Camellia sinensis var. sinensis HOM05D000443 ORTHO05D006935 3.7e-42 174.9 118 94.1
CSS0037601 Camellia sinensis var. sinensis HOM05D000443 ORTHO05D006935 3.7e-42 174.9 118 94.1
MD05G1141900 Malus domestica HOM05D000443 ORTHO05D006935 4.9e-42 174.5 118 93.2
Medtr8g063460 Medicago truncatula HOM05D000443 ORTHO05D006935 6.4e-42 174.1 116 87.9
arahy.Tifrunner.gnm1.ann1.5JP8BK Arachis hypogaea HOM05D000443 ORTHO05D006935 8.3e-42 173.7 118 89.8
HPP92_015754 Vanilla planifolia HOM05D000443 ORTHO05D006935 1.1e-41 173.3 118 94.1
THA.LOC104804305 Tarenaya hassleriana HOM05D000443 ORTHO05D006935 1.4e-41 172.9 118 90.7
Hma1.2p1_0271F.1_g108700 Hydrangea macrophylla HOM05D000443 ORTHO05D006935 3.5e-40 168.3 116 92.2
PSO541G4498 Papaver somniferum HOM05D000443 ORTHO05D006935 3.5e-40 168.3 118 89.8
PSO675G5783 Papaver somniferum HOM05D000443 ORTHO05D006935 3.5e-40 168.3 118 89.8
CANSAT25G1435 Cannabis sativa HOM05D000443 ORTHO05D006935 4.6e-40 167.9 118 91.5
Nn8g40373 Nelumbo nucifera HOM05D000443 ORTHO05D006935 4.6e-40 167.9 118 91.5
Pp3c6_23720 Physcomitrium patens HOM05D000443 ORTHO05D006935 6.0e-40 167.5 118 78.0
Thecc.02G147500 Theobroma cacao HOM05D000443 ORTHO05D006935 6.0e-40 167.5 118 90.7
TWI31G1377 Tripterygium wilfordii HOM05D000443 ORTHO05D006935 6.0e-40 167.5 118 90.7
unitig_62.g23670 Utricularia gibba HOM05D000443 ORTHO05D006935 6.0e-40 167.5 118 92.4
Potri.009G169200 Populus trichocarpa HOM05D000443 ORTHO05D006935 7.8e-40 167.2 118 90.7
SalBow8G0190 Salvia bowleyana HOM05D000443 ORTHO05D006935 7.8e-40 167.2 118 84.7
Manes.15G113600 Manihot esculenta HOM05D000443 ORTHO05D006935 1.0e-39 166.8 118 90.7
PGR142G2097 Punica granatum HOM05D000443 ORTHO05D006935 1.0e-39 166.8 118 90.7
TWI79G0198 Tripterygium wilfordii HOM05D000443 ORTHO05D006935 1.0e-39 166.8 118 90.7
Os09g0491692 Oryza sativa ssp. japonica HOM05D000443 ORTHO05D006935 1.3e-39 166.4 118 89.0
COL.COLO4_03844 Corchorus olitorius HOM05D000443 ORTHO05D006935 1.7e-39 166.0 118 89.8
Zm00001eb316840 Zea mays HOM05D000443 ORTHO05D006935 2.3e-39 165.6 118 89.0
Ciclev10029609m.g Citrus clementina HOM05D000443 ORTHO05D006935 3.0e-39 165.2 118 89.8
Psat4g127000 Pisum sativum HOM05D000443 ORTHO05D006935 3.9e-39 164.9 118 87.3
Sed0001438 Sechium edule HOM05D000443 ORTHO05D006935 3.9e-39 164.9 118 90.7
vmacro20019 Vaccinium macrocarpon HOM05D000443 ORTHO05D006935 3.9e-39 164.9 118 90.7
MELO3C015698.2 Cucumis melo HOM05D000443 ORTHO05D006935 5.1e-39 164.5 118 89.8
Duzib132G0906 Durio zibethinus HOM05D000443 ORTHO05D006935 5.1e-39 164.5 118 89.8
Duzib052G0133 Durio zibethinus HOM05D000443 ORTHO05D006935 8.6e-39 163.7 118 89.0
Atru.chr5.3573 Acer truncatum HOM05D000443 ORTHO05D006935 1.1e-38 163.3 118 89.0
CiPaw.06G114400 Carya illinoinensis HOM05D000443 ORTHO05D006935 1.1e-38 163.3 118 89.0
Sed0000770 Sechium edule HOM05D000443 ORTHO05D006935 1.1e-38 163.3 118 89.0
Aqoxy6G01540 Aquilegia oxysepala HOM05D000443 ORTHO05D006935 1.9e-38 162.5 118 89.8
TAR628G1273 Trochodendron aralioides HOM05D000443 ORTHO05D006935 1.9e-38 162.5 118 89.0
Gohir.D02G193500 Gossypium hirsutum HOM05D000443 ORTHO05D006935 1.6e-37 159.5 118 86.4
Gorai.005G216300 Gossypium raimondii HOM05D000443 ORTHO05D006935 1.6e-37 159.5 118 86.4
Pp3c16_14160 Physcomitrium patens HOM05D000443 ORTHO05D006935 2.8e-37 158.7 116 82.8
Gohir.A03G170400 Gossypium hirsutum HOM05D000443 ORTHO05D006935 1.8e-36 156.0 118 84.7
AagrBONN_evm.TU.Sc2ySwM_369.59 Anthoceros agrestis HOM05D000443 ORTHO05D006935 3.1e-36 155.2 118 85.6
Ah.01g017680 Amaranthus hybridus HOM05D000443 ORTHO05D006935 8.9e-36 153.7 118 87.3
AagrBONN_evm.TU.Sc2ySwM_362.658 Anthoceros agrestis HOM05D000443 ORTHO05D006935 1.2e-35 153.3 116 85.3
Haze_01963 Corylus avellana HOM05D000037 ORTHO05D000150 9.9e-35 150.2 150 61.3
RcHm_v2.0_Chr6g0281161 Rosa chinensis HOM05D000443 ORTHO05D006935 3.2e-33 145.2 101 94.1
HPP92_018958 Vanilla planifolia HOM05D000443 ORTHO05D006935 3.5e-32 141.7 103 90.3
ClCG02G003280 Citrullus lanatus HOM05D000443 ORTHO05D006935 3.0e-31 138.7 104 89.4
Lalb_Chr05g0227911 Lupinus albus HOM05D000443 ORTHO05D006935 1.9e-30 136.0 102 90.2
Manes.03G097000 Manihot esculenta HOM05D000443 ORTHO05D006935 3.3e-30 135.2 101 90.1
Sabra09G0131200 Salix brachista HOM05D000037 ORTHO05D004802 1.2e-29 133.3 102 87.3
CsaV3_7G002090 Cucumis sativus L. HOM05D000037 ORTHO05D000150 1.6e-29 132.9 101 89.1
SMO358G0470 Selaginella moellendorffii HOM05D000443 ORTHO05D006935 6.2e-29 131.0 118 75.4
CBR_g20399 Chara braunii HOM05D000443 ORTHO05D006935 7.6e-27 124.0 108 74.1
Cc09_g10900 Coffea canephora HOM05D000443 ORTHO05D006935 1.1e-25 120.2 90 87.8
Mapoly0106s0018 Marchantia polymorpha HOM05D000443 ORTHO05D006935 5.4e-25 117.9 118 72.0
GSVIVG01011124001 Vitis vinifera HOM05D000443 ORTHO05D006935 7.1e-25 117.5 90 87.8
Psat4g126920 Pisum sativum HOM05D000443 ORTHO05D006935 2.7e-24 115.5 92 80.4
THA.LOC104804551 Tarenaya hassleriana HOM05D000443 ORTHO05D006935 3.5e-24 115.2 92 82.6
Migut.G00034 Erythranthe guttata HOM05D000443 ORTHO05D006935 8.1e-21 104.0 99 64.6
ClCG02G010820 Citrullus lanatus HOM05D000443 ORTHO05D006935 1.1e-20 103.6 119 57.1
Lj9A408T89 Lonicera japonica HOM05D000443 ORTHO05D006935 1.4e-20 103.2 57 98.2
FvH4_2g16970 Fragaria vesca HOM05D000443 ORTHO05D006935 4.0e-20 101.7 57 96.5
ATR0329G054 Amborella trichopoda HOM05D000443 ORTHO05D006935 5.3e-20 101.3 57 96.5
MD05G1142800 Malus domestica HOM05D000443 ORTHO05D006935 5.3e-20 101.3 57 96.5
QL11p056627 Quercus lobata HOM05D000443 ORTHO05D006935 9.0e-20 100.5 57 94.7
Ca_14680_v3 Cicer arietinum L. HOM05D000443 ORTHO05D006935 1.5e-19 99.8 57 93.0
ATR0329G065 Amborella trichopoda HOM05D000443 ORTHO05D006935 2.6e-19 99.0 57 94.7
Ca_13829_v3 Cicer arietinum L. HOM05D000443 ORTHO05D006935 2.9e-18 95.5 57 89.5
Lj9A408T88 Lonicera japonica HOM05D000443 ORTHO05D006935 9.3e-17 90.5 46 97.8
Nitab4.5_0001082g0080 Nicotiana tabacum HOM05D000443 ORTHO05D001066 9.3e-17 90.5 46 97.8
TPR.G669 Trifolium pratense HOM05D000443 ORTHO05D006935 2.1e-16 89.4 46 95.7
Aqoxy6G01539 Aquilegia oxysepala HOM05D000443 ORTHO05D006935 4.6e-16 88.2 46 95.7
MELO3C013484.2 Cucumis melo HOM05D000443 ORTHO05D006935 6.7e-15 84.3 117 43.6
CBR_g764 Chara braunii HOM05D000443 ORTHO05D006935 1.1e-14 83.6 46 89.1
Zm00001eb288990 Zea mays HOM05D000443 ORTHO05D006935 1.1e-14 83.6 96 70.8
TPR.G26885 Trifolium pratense HOM05D000443 ORTHO05D006935 4.3e-14 81.6 57 82.5
CsaV3_6G010030 Cucumis sativus L. HOM05D000443 ORTHO05D006935 5.6e-14 81.3 120 43.3
Phvul.010G144400 Phaseolus vulgaris HOM05D000443 ORTHO05D006935 2.6e-11 72.4 47 83.0


User provided reference genes

Program Settings