Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0605G126 Amborella trichopoda HOM05D003991 ORTHO05D004883 0.0e+00 1529.6 797 100.0
TAR622G0714 Trochodendron aralioides HOM05D003991 ORTHO05D004883 0.0e+00 1126.7 805 72.5
MBI17_g07944_MAGBIO Magnolia biondii HOM05D003991 ORTHO05D004883 0.0e+00 1125.2 803 72.7
Nn4g23516 Nelumbo nucifera HOM05D003991 ORTHO05D004883 0.0e+00 1097.8 801 71.8
PSO782G2666 Papaver somniferum HOM05D003991 ORTHO05D004883 0.0e+00 1080.1 808 69.8
PSO063G1675 Papaver somniferum HOM05D003991 ORTHO05D004883 0.0e+00 1079.7 809 69.8
Ciclev10011098m.g Citrus clementina HOM05D003991 ORTHO05D004883 1.0e-308 1063.1 806 68.9
CANSAT64G1645 Cannabis sativa HOM05D003991 ORTHO05D004883 5.6e-307 1057.4 818 68.5
TWI32G1311 Tripterygium wilfordii HOM05D003991 ORTHO05D004883 9.5e-307 1056.6 800 68.9
TWI34G0665 Tripterygium wilfordii HOM05D003991 ORTHO05D004883 1.1e-305 1053.1 802 68.6
COL.COLO4_10252 Corchorus olitorius HOM05D003991 ORTHO05D004883 1.3e-303 1046.2 809 68.5
Duzib138G0045 Durio zibethinus HOM05D003991 ORTHO05D004883 1.3e-303 1046.2 819 68.1
TAR374G0063 Trochodendron aralioides HOM05D003991 ORTHO05D004883 1.1e-302 1043.1 761 71.7
Prupe.3G248800 Prunus persica HOM05D003991 ORTHO05D004883 1.4e-302 1042.7 797 68.0
Manes.02G059600 Manihot esculenta HOM05D003991 ORTHO05D004883 9.2e-302 1040.0 802 68.1
RcHm_v2.0_Chr2g0164851 Rosa chinensis HOM05D003991 ORTHO05D004883 9.2e-302 1040.0 799 69.2
Potri.017G100300 Populus trichocarpa HOM05D003991 ORTHO05D004883 2.7e-301 1038.5 803 68.1
CiPaw.03G082800 Carya illinoinensis HOM05D003991 ORTHO05D004883 4.6e-301 1037.7 781 68.8
Eucgr.I02064 Eucalyptus grandis HOM05D003991 ORTHO05D004883 1.3e-300 1036.2 795 67.4
FvH4_6g46350 Fragaria vesca HOM05D003991 ORTHO05D004883 2.3e-300 1035.4 798 69.0
Gorai.001G207000 Gossypium raimondii HOM05D003991 ORTHO05D004883 2.3e-300 1035.4 807 68.3
Lj4A124G55 Lonicera japonica HOM05D003991 ORTHO05D004883 3.0e-300 1035.0 802 67.5
FAN09G2010 Fragaria x ananassa HOM05D003991 ORTHO05D004883 2.5e-299 1031.9 798 68.8
MD17G1065900 Malus domestica HOM05D003991 ORTHO05D004883 2.5e-299 1031.9 798 67.7
Atru.chr8.642 Acer truncatum HOM05D003991 ORTHO05D004883 5.6e-299 1030.8 801 68.7
Cpa.g.sc541.1 Carica papaya HOM05D003991 ORTHO05D004883 1.1e-297 1026.5 758 70.4
MD09G1074500 Malus domestica HOM05D003991 ORTHO05D004883 2.3e-297 1025.4 798 67.4
vmacro18126 Vaccinium macrocarpon HOM05D003991 ORTHO05D004883 2.3e-297 1025.4 849 65.1
Duzib133G0226 Durio zibethinus HOM05D003991 ORTHO05D004883 3.1e-297 1025.0 810 67.2
Hma1.2p1_1837F.1_g304750 Hydrangea macrophylla HOM05D003991 ORTHO05D004883 3.1e-297 1025.0 815 67.6
FAN05G5440 Fragaria x ananassa HOM05D003991 ORTHO05D004883 5.2e-297 1024.2 813 66.5
Manes.01G103600 Manihot esculenta HOM05D003991 ORTHO05D004883 8.9e-297 1023.5 803 66.7
FAN14G3680 Fragaria x ananassa HOM05D003991 ORTHO05D004883 1.2e-296 1023.1 812 67.6
Potri.004G114600 Populus trichocarpa HOM05D003991 ORTHO05D004883 3.4e-296 1021.5 803 66.9
Cfa007697 Carpinus fangiana HOM05D003991 ORTHO05D004883 2.2e-295 1018.8 799 67.8
Phvul.008G026400 Phaseolus vulgaris HOM05D003991 ORTHO05D004883 2.7e-293 1011.9 795 66.7
MELO3C026296.2 Cucumis melo HOM05D003991 ORTHO05D004883 1.0e-292 1010.0 808 67.5
PGR004G0075 Punica granatum HOM05D003991 ORTHO05D004883 1.0e-292 1010.0 792 68.2
Lalb_Chr10g0092711 Lupinus albus HOM05D003991 ORTHO05D004883 1.3e-292 1009.6 799 66.8
Lj1g0022443 Lotus japonicus HOM05D003991 ORTHO05D004883 1.7e-292 1009.2 798 67.2
VMungo1383G3466 Vigna mungo HOM05D003991 ORTHO05D004883 3.0e-292 1008.4 798 66.5
AL7G51550 Arabidopsis lyrata HOM05D003991 ORTHO05D004883 8.6e-292 1006.9 800 66.2
FAN02G3988 Fragaria x ananassa HOM05D003991 ORTHO05D004883 8.6e-292 1006.9 812 66.6
DCAR_011017 Daucus carota HOM05D003991 ORTHO05D004883 1.9e-291 1005.7 808 66.7
AT5G38880 Arabidopsis thaliana HOM05D003991 ORTHO05D004883 5.6e-291 1004.2 800 66.4
CsaV3_4G010070 Cucumis sativus L. HOM05D003991 ORTHO05D004883 9.6e-291 1003.4 807 66.9
Ca_06908_v3 Cicer arietinum L. HOM05D003991 ORTHO05D004883 2.8e-290 1001.9 797 66.5
Carub.0007s3697 Capsella rubella HOM05D003991 ORTHO05D004883 3.6e-290 1001.5 801 65.8
CSS0001564 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 8.1e-290 1000.3 806 65.9
TPR.G23393 Trifolium pratense HOM05D003991 ORTHO05D004883 8.9e-289 996.9 799 65.7
Sed0026923 Sechium edule HOM05D003991 ORTHO05D004883 1.2e-288 996.5 801 66.7
Glyma.18G274100 Glycine max HOM05D003991 ORTHO05D004883 2.0e-288 995.7 799 66.1
Psat3g203280 Pisum sativum HOM05D003991 ORTHO05D004883 1.3e-287 993.0 799 65.5
Glyma.08G251400 Glycine max HOM05D003991 ORTHO05D004883 1.7e-287 992.6 801 66.5
Lsat_1_v5_gn_3_96860 Lactuca sativa HOM05D003991 ORTHO05D004883 2.2e-287 992.3 808 64.5
HanXRQChr02g0043871 Helianthus annuus HOM05D003991 ORTHO05D004883 6.4e-287 990.7 796 65.5
Haze_14380 Corylus avellana HOM05D003991 ORTHO05D004883 8.4e-287 990.3 872 62.6
GSVIVG01036544001 Vitis vinifera HOM05D003991 ORTHO05D004883 1.6e-285 986.1 665 75.2
Aa31LG2G3750 Aethionema arabicum HOM05D003991 ORTHO05D004883 6.0e-285 984.2 793 65.7
SEGI_18103 Sequoiadendron giganteum HOM05D003991 ORTHO05D004883 7.8e-285 983.8 814 63.5
THA.LOC104822745 Tarenaya hassleriana HOM05D003991 ORTHO05D004883 2.3e-284 982.2 807 66.2
Thhalv10003675m.g Eutrema salsugineum HOM05D003991 ORTHO05D004883 4.3e-283 978.0 788 65.4
Sp2g18130 Schrenkiella parvula HOM05D003991 ORTHO05D004883 5.6e-283 977.6 789 65.4
SGA_v2.0_scaffold148G36448 Striga asiatica HOM05D003991 ORTHO05D004883 1.6e-282 976.1 797 64.1
Nitab4.5_0000154g0150 Nicotiana tabacum HOM05D003991 ORTHO05D004883 6.2e-282 974.2 791 64.3
ClCG07G016050 Citrullus lanatus HOM05D003991 ORTHO05D004883 1.1e-281 973.4 851 63.6
EL10Ac2g04440 Beta vulgaris HOM05D003991 ORTHO05D004883 1.4e-281 973.0 811 63.7
Peaxi162Scf01002g00121 Petunia axillaris HOM05D003991 ORTHO05D004883 2.4e-281 972.2 793 64.7
arahy.Tifrunner.gnm1.ann1.YA99EJ Arachis hypogaea HOM05D003991 ORTHO05D004883 3.1e-281 971.8 793 66.0
CDE06G2000 Ceratophyllum demersum HOM05D003991 ORTHO05D004883 5.3e-281 971.1 810 63.0
Thhalv10027646m.g Eutrema salsugineum HOM05D003991 ORTHO05D004883 9.0e-281 970.3 801 64.5
BcaC06g30850 Brassica carinata HOM05D003991 ORTHO05D004883 2.6e-280 968.8 788 65.0
Rhsim08G0077400 Rhododendron simsii HOM05D003991 ORTHO05D004883 5.8e-280 967.6 824 63.1
Medtr7g016900 Medicago truncatula HOM05D003991 ORTHO05D004883 2.2e-279 965.7 801 64.3
Sopen03g010790 Solanum pennellii HOM05D003991 ORTHO05D004883 2.2e-279 965.7 798 63.5
Hund13674 Selenicereus undatus HOM05D003991 ORTHO05D004883 3.8e-279 964.9 791 63.1
A06p39740 Brassica napus HOM05D003991 ORTHO05D004883 8.4e-279 963.8 787 64.3
BraA06t26889Z Brassica rapa HOM05D003991 ORTHO05D004883 8.4e-279 963.8 787 64.3
C07p38530 Brassica napus HOM05D003991 ORTHO05D004883 1.1e-278 963.4 786 64.1
BolC7t44375H Brassica oleracea HOM05D003991 ORTHO05D004883 1.1e-278 963.4 786 64.1
BcaC06g33715 Brassica carinata HOM05D003991 ORTHO05D004883 1.4e-278 963.0 786 64.1
AUR62009479 Chenopodium quinoa HOM05D003991 ORTHO05D004883 9.3e-278 960.3 802 63.1
arahy.Tifrunner.gnm1.ann1.T6I3L8 Arachis hypogaea HOM05D003991 ORTHO05D004883 1.9e-275 952.6 804 64.6
CAN.G427.3 Capsicum annuum HOM05D003991 ORTHO05D004883 5.6e-275 951.0 797 62.4
Sabra17G0086400 Salix brachista HOM05D003991 ORTHO05D004883 3.6e-274 948.3 899 59.6
Cc07_g04500 Coffea canephora HOM05D003991 ORTHO05D004883 6.2e-274 947.6 809 62.7
Thecc.04G106400 Theobroma cacao HOM05D003991 ORTHO05D004883 6.9e-273 944.1 647 73.9
Aqoxy3G03722 Aquilegia oxysepala HOM05D003991 ORTHO05D004883 1.3e-271 939.9 797 63.9
Solyc03g046590.3 Solanum lycopersicum HOM05D003991 ORTHO05D004883 3.8e-271 938.3 798 62.0
MSTRG.2973 Avicennia marina HOM05D003991 ORTHO05D004883 4.9e-271 937.9 797 61.9
AUR62023158 Chenopodium quinoa HOM05D003991 ORTHO05D004883 8.4e-271 937.2 786 62.6
Gohir.A07G179600 Gossypium hirsutum HOM05D003991 ORTHO05D004883 1.1e-270 936.8 647 74.3
Gohir.D07G186400 Gossypium hirsutum HOM05D003991 ORTHO05D004883 2.7e-269 932.2 647 73.7
ECA246G2054 Erigeron canadensis HOM05D003991 ORTHO05D004883 7.9e-269 930.6 799 62.2
SalBow1G2342 Salvia bowleyana HOM05D003991 ORTHO05D004883 1.3e-268 929.9 797 61.7
Migut.O00382 Erythranthe guttata HOM05D003991 ORTHO05D004883 8.1e-266 920.6 796 60.9
CiPaw.04G052100 Carya illinoinensis HOM05D003991 ORTHO05D004883 1.3e-260 903.3 802 61.6
HPP92_025879 Vanilla planifolia HOM05D003991 ORTHO05D004883 3.0e-260 902.1 792 59.6
BraA09t36055Z Brassica rapa HOM05D003991 ORTHO05D004883 9.6e-259 897.1 786 61.6
C09p04400 Brassica napus HOM05D003991 ORTHO05D004883 1.6e-258 896.3 788 62.6
Ah.16g101030 Amaranthus hybridus HOM05D003991 ORTHO05D004883 3.4e-256 888.6 779 61.4
unitig_748.g8415 Utricularia gibba HOM05D003991 ORTHO05D004883 7.6e-256 887.5 795 59.9
BolC9t53370H Brassica oleracea HOM05D003991 ORTHO05D004883 6.5e-255 884.4 786 62.2
Lsat_1_v5_gn_2_90201 Lactuca sativa HOM05D003991 ORTHO05D004883 1.0e-252 877.1 806 59.6
Nitab4.5_0001434g0090 Nicotiana tabacum HOM05D003991 ORTHO05D004883 1.5e-251 873.2 798 59.1
Oeu007082.1 Olea europaea HOM05D003991 ORTHO05D004883 1.1e-249 867.1 840 56.2
A09p04180 Brassica napus HOM05D003991 ORTHO05D004883 1.5e-248 863.2 787 59.8
BcaC04g23813 Brassica carinata HOM05D003991 ORTHO05D004883 3.7e-242 842.0 788 60.3
HanXRQChr07g0200011 Helianthus annuus HOM05D003991 ORTHO05D004883 3.3e-235 818.9 825 55.0
ECA238G0416 Erigeron canadensis HOM05D003991 ORTHO05D004883 3.0e-228 795.8 802 55.2
CSS0050035 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 7.7e-224 781.2 720 61.4
SMO147G0301 Selaginella moellendorffii HOM05D003991 ORTHO05D004883 7.7e-216 754.6 806 51.6
BcaC04g23825 Brassica carinata HOM05D003991 ORTHO05D004883 2.3e-212 743.0 637 63.4
Sc11g0008820 Simmondsia chinensis HOM05D003991 ORTHO05D004883 5.9e-200 701.8 652 59.4
Pp3c9_9760 Physcomitrium patens HOM05D003991 ORTHO05D004883 5.6e-198 695.3 848 47.2
Pp3c9_9870 Physcomitrium patens HOM05D003991 ORTHO05D004883 5.6e-198 695.3 848 47.2
Mapoly0016s0130 Marchantia polymorpha HOM05D003991 ORTHO05D004883 1.6e-192 677.2 872 45.5
Actinidia26270 Actinidia chinensis HOM05D003991 ORTHO05D004883 9.5e-190 667.9 480 72.9
Pp3c15_7610 Physcomitrium patens HOM05D003991 ORTHO05D004883 5.1e-183 645.6 846 45.5
MBI17_g36999_MAGBIO Magnolia biondii HOM05D003991 ORTHO05D004883 3.3e-182 642.9 530 65.8
Pp3c10_8720 Physcomitrium patens HOM05D003991 ORTHO05D004883 1.8e-180 637.1 655 53.0
Zm00001eb311840 Zea mays HOM05D003991 ORTHO05D004883 4.0e-172 609.4 461 67.0
AagrBONN_evm.TU.Sc2ySwM_344.1887 Anthoceros agrestis HOM05D003991 ORTHO05D004883 5.1e-167 592.4 833 42.3
Os09g0386600 Oryza sativa ssp. japonica HOM05D003991 ORTHO05D004883 8.1e-165 585.1 436 67.9
Zm00001eb099080 Zea mays HOM05D003991 ORTHO05D004883 9.3e-161 571.6 586 54.1
ECA285G0010 Erigeron canadensis HOM05D003991 ORTHO05D004883 1.3e-157 561.2 620 51.6
CARHR263670 Cardamine hirsuta HOM05D003991 ORTHO05D004883 7.2e-121 439.1 405 58.3
BcaB04g19523 Brassica carinata HOM05D003991 ORTHO05D004883 5.7e-94 349.7 442 46.4
BcaC04g23815 Brassica carinata HOM05D003991 ORTHO05D004883 8.3e-93 345.9 616 40.7
CBR_g36314 Chara braunii HOM05D003991 ORTHO05D004883 1.2e-88 332.0 765 33.2
Dinv33866 Davidia involucrata HOM05D003991 ORTHO05D004883 1.1e-76 292.4 211 73.5
Aa31LG1G6630 Aethionema arabicum HOM05D003991 ORTHO05D004883 4.0e-71 273.9 290 55.9
arahy.Tifrunner.gnm1.ann1.VU455X Arachis hypogaea HOM05D003991 ORTHO05D004883 1.6e-67 261.9 240 60.0
arahy.Tifrunner.gnm1.ann1.994D9I Arachis hypogaea HOM05D003991 ORTHO05D004883 2.8e-64 251.1 197 67.5
arahy.Tifrunner.gnm1.ann1.52AFQE Arachis hypogaea HOM05D003991 ORTHO05D004883 4.7e-64 250.4 197 67.5
arahy.Tifrunner.gnm1.ann1.YE0A4T Arachis hypogaea HOM05D003991 ORTHO05D004883 4.7e-64 250.4 197 67.5
Dinv33867 Davidia involucrata HOM05D003991 ORTHO05D004883 4.9e-61 240.4 212 59.9
Sp7g03030 Schrenkiella parvula HOM05D003991 ORTHO05D004883 3.5e-59 234.2 243 55.1
SMO147G0173 Selaginella moellendorffii HOM05D003991 ORTHO05D004883 4.6e-59 233.8 506 37.0
BcaC04g23820 Brassica carinata HOM05D003991 ORTHO05D004883 2.3e-50 204.9 479 34.4
Dinv33865 Davidia involucrata HOM05D003991 ORTHO05D004883 2.4e-44 184.9 131 71.0
MD09G1075300 Malus domestica HOM05D003991 ORTHO05D004883 5.4e-44 183.7 120 72.5
HPP92_006579 Vanilla planifolia HOM05D003991 ORTHO05D004883 6.2e-40 170.2 208 50.5
CSS0000762 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 3.7e-32 144.4 87 75.9
CSS0038698 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 3.7e-32 144.4 87 75.9
SMO147G0397 Selaginella moellendorffii HOM05D003991 ORTHO05D050858 3.7e-32 144.4 166 47.0
Sc11g0008830 Simmondsia chinensis HOM05D003991 ORTHO05D004883 6.2e-32 143.7 93 69.9
HPP92_006533 Vanilla planifolia HOM05D003991 ORTHO05D004883 6.2e-32 143.7 369 30.9
BcaC04g23819 Brassica carinata HOM05D003991 ORTHO05D004883 5.3e-31 140.6 806 24.9
HPP92_026595 Vanilla planifolia HOM05D003991 ORTHO05D004883 6.5e-29 133.7 117 55.6
arahy.Tifrunner.gnm1.ann1.Q8CATI Arachis hypogaea HOM05D003991 ORTHO05D004883 1.5e-22 112.5 74 82.4
HPP92_028205 Vanilla planifolia HOM05D003991 ORTHO05D004883 1.7e-21 109.0 112 44.6
HPP92_026824 Vanilla planifolia HOM05D003991 ORTHO05D004883 9.3e-20 103.2 107 52.3
BcaC04g23821 Brassica carinata HOM05D003991 ORTHO05D004883 6.1e-19 100.5 90 56.7
BcaB04g19526 Brassica carinata HOM05D003991 ORTHO05D004883 1.1e-17 96.3 73 64.4
HPP92_028494 Vanilla planifolia HOM05D003991 ORTHO05D004883 1.3e-16 92.8 164 40.2
HPP92_026934 Vanilla planifolia HOM05D003881 ORTHO05D004343 8.2e-16 90.1 119 45.4
Medtr7g008870 Medicago truncatula HOM05D003991 ORTHO05D004883 2.6e-14 85.1 72 58.3
Cfa002005 Carpinus fangiana HOM05D003991 ORTHO05D009743 3.4e-14 84.7 57 75.4
Os11g0189900 Oryza sativa ssp. japonica HOM05D003991 ORTHO05D298446 8.5e-13 80.1 77 54.5
SEGI_36661 Sequoiadendron giganteum HOM05D001164 ORTHO05D018381 1.6e-11 75.9 77 50.6
Medtr7g051850 Medicago truncatula HOM05D003991 ORTHO05D004883 2.7e-11 75.1 59 57.6
QL05p023649 Quercus lobata HOM05D003991 ORTHO05D004883 8.8e-10 70.1 52 76.9
QL01p030546 Quercus lobata HOM05D003991 ORTHO05D004883 2.0e-09 68.9 52 75.0
HPP92_027770 Vanilla planifolia HOM05D003991 ORTHO05D432268 2.0e-09 68.9 76 51.3
Cfa020174 Carpinus fangiana HOM05D003991 ORTHO05D004883 5.7e-09 67.4 42 71.4
Dinv33864 Davidia involucrata HOM05D003991 ORTHO05D004883 1.7e-08 65.9 113 44.2
QL05p049573 Quercus lobata HOM05D003991 ORTHO05D004883 8.2e-08 63.5 51 70.6
HPP92_027976 Vanilla planifolia HOM05D003991 ORTHO05D004883 1.8e-07 62.4 247 28.7
QL05p049558 Quercus lobata HOM05D003991 ORTHO05D004883 5.3e-07 60.8 64 60.9


User provided reference genes

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