Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0605G097 Amborella trichopoda HOM05D004435 ORTHO05D005103 0.0e+00 3892.4 1910 100.0
MBI06_g44136_MAGBIO Magnolia biondii HOM05D004435 ORTHO05D005103 0.0e+00 1353.2 2005 41.9
Dinv34221 Davidia involucrata HOM05D004435 ORTHO05D005103 0.0e+00 1152.9 2001 38.5
Atru.chr5.694 Acer truncatum HOM05D004435 ORTHO05D005103 0.0e+00 1148.3 1981 37.9
Nn1g00298 Nelumbo nucifera HOM05D004435 ORTHO05D005103 0.0e+00 1142.1 2006 38.2
RcHm_v2.0_Chr1g0360111 Rosa chinensis HOM05D004435 ORTHO05D005103 0.0e+00 1129.0 1823 39.4
CSS0028718 Camellia sinensis var. sinensis HOM05D004435 ORTHO05D005103 0.0e+00 1126.3 1888 39.1
Aqoxy1G03073 Aquilegia oxysepala HOM05D004435 ORTHO05D005103 0.0e+00 1125.2 1995 37.9
Cfa003785 Carpinus fangiana HOM05D004435 ORTHO05D005103 0.0e+00 1121.7 1820 39.6
QL08p045721 Quercus lobata HOM05D004435 ORTHO05D005103 0.0e+00 1118.6 2069 36.9
Duzib133G0905 Durio zibethinus HOM05D004435 ORTHO05D005103 0.0e+00 1117.8 1820 38.8
Haze_15676 Corylus avellana HOM05D004435 ORTHO05D005103 0.0e+00 1112.8 1820 39.1
CiPaw.01G077800 Carya illinoinensis HOM05D004435 ORTHO05D005103 0.0e+00 1110.9 1993 38.4
FAN06G0620 Fragaria x ananassa HOM05D004435 ORTHO05D005103 0.0e+00 1110.1 1822 38.6
Rhsim07G0003000 Rhododendron simsii HOM05D004435 ORTHO05D005103 0.0e+00 1109.4 1846 38.3
Gorai.007G109900 Gossypium raimondii HOM05D004435 ORTHO05D005103 0.0e+00 1107.0 1827 38.6
FvH4_7g16880 Fragaria vesca HOM05D004435 ORTHO05D005103 0.0e+00 1106.7 1822 38.6
FAN06G2443 Fragaria x ananassa HOM05D004435 ORTHO05D005103 0.0e+00 1105.5 1822 38.7
Manes.01G244500 Manihot esculenta HOM05D004435 ORTHO05D005103 0.0e+00 1099.3 1968 36.3
FAN03G2945 Fragaria x ananassa HOM05D004435 ORTHO05D005103 0.0e+00 1098.6 1829 38.4
Gohir.D11G102800 Gossypium hirsutum HOM05D004435 ORTHO05D005103 0.0e+00 1095.9 1831 38.3
Gohir.A11G098100 Gossypium hirsutum HOM05D004435 ORTHO05D005103 0.0e+00 1093.2 1836 38.8
Potri.002G173300 Populus trichocarpa HOM05D004435 ORTHO05D005103 0.0e+00 1090.5 1827 37.5
FAN10G0386 Fragaria x ananassa HOM05D004435 ORTHO05D005103 0.0e+00 1089.7 1822 38.4
FAN10G3841 Fragaria x ananassa HOM05D004435 ORTHO05D005103 0.0e+00 1088.2 1822 38.3
Ciclev10018429m.g Citrus clementina HOM05D004435 ORTHO05D005103 0.0e+00 1079.7 2005 36.4
COL.COLO4_06228 Corchorus olitorius HOM05D004435 ORTHO05D005103 0.0e+00 1075.8 1832 38.0
Actinidia20252 Actinidia chinensis HOM05D004435 ORTHO05D005103 1.3e-311 1074.3 1795 38.6
Sabra02G0140000 Salix brachista HOM05D004435 ORTHO05D005103 4.4e-310 1068.9 1834 37.4
Prupe.2G190800 Prunus persica HOM05D004435 ORTHO05D005103 5.7e-310 1068.5 1849 38.2
PSO135G0708 Papaver somniferum HOM05D004435 ORTHO05D005103 6.4e-309 1065.1 1985 36.5
MD01G1083800 Malus domestica HOM05D004435 ORTHO05D005103 1.9e-308 1063.5 2004 36.7
PSO384G1989 Papaver somniferum HOM05D004435 ORTHO05D005103 3.5e-307 1059.3 1980 36.4
CANSAT56G0169 Cannabis sativa HOM05D004435 ORTHO05D005103 2.4e-303 1046.6 1832 37.3
Lalb_Chr10g0100641 Lupinus albus HOM05D004435 ORTHO05D005103 2.0e-302 1043.5 1987 35.5
vmacro04283 Vaccinium macrocarpon HOM05D004435 ORTHO05D005103 3.4e-302 1042.7 1852 37.1
CsaV3_3G007940 Cucumis sativus L. HOM05D004435 ORTHO05D005103 9.9e-302 1041.2 1814 37.8
MELO3C006012.2 Cucumis melo HOM05D004435 ORTHO05D005103 1.3e-301 1040.8 1814 37.8
TWI14G0481 Tripterygium wilfordii HOM05D004435 ORTHO05D005103 1.3e-301 1040.8 1838 37.2
arahy.Tifrunner.gnm1.ann1.VXNL4X Arachis hypogaea HOM05D004435 ORTHO05D005103 1.1e-300 1037.7 1993 35.4
Ca_23520_v3 Cicer arietinum L. HOM05D004435 ORTHO05D005103 5.4e-300 1035.4 1820 37.0
arahy.Tifrunner.gnm1.ann1.Y0VUSY Arachis hypogaea HOM05D004435 ORTHO05D005103 9.3e-300 1034.6 1992 35.1
Sed0001978 Sechium edule HOM05D004435 ORTHO05D005103 1.6e-296 1023.8 1812 37.0
Lj3g0005802 Lotus japonicus HOM05D004435 ORTHO05D005103 2.0e-294 1016.9 1808 36.8
Glyma.16G023300 Glycine max HOM05D004435 ORTHO05D005103 6.4e-293 1011.9 1819 37.5
Migut.B01890 Erythranthe guttata HOM05D004435 ORTHO05D005103 1.9e-292 1010.4 1860 37.5
Medtr8g027425 Medicago truncatula HOM05D004435 ORTHO05D005103 9.6e-289 998.0 1806 36.0
PGR044G1747 Punica granatum HOM05D004435 ORTHO05D005103 9.6e-289 998.0 2032 33.7
Glyma.07G054500 Glycine max HOM05D004435 ORTHO05D005103 2.1e-288 996.9 1807 37.1
Hma1.2p1_0101F.1_g049200 Hydrangea macrophylla HOM05D004435 ORTHO05D005103 9.0e-287 991.5 1409 41.7
TAR374G0897 Trochodendron aralioides HOM05D004435 ORTHO05D005103 1.9e-281 973.8 1352 44.0
Eucgr.E00041 Eucalyptus grandis HOM05D004435 ORTHO05D005103 2.5e-281 973.4 1837 35.8
THA.LOC104802083 Tarenaya hassleriana HOM05D004435 ORTHO05D005103 4.8e-280 969.1 1984 34.6
VMungo0331G1532 Vigna mungo HOM05D004435 ORTHO05D005103 1.4e-279 967.6 1987 35.1
SGA_v2.0_scaffold5G03029 Striga asiatica HOM05D004435 ORTHO05D005103 1.5e-278 964.1 1833 35.8
Peaxi162Scf00345g00125 Petunia axillaris HOM05D004435 ORTHO05D005103 6.1e-275 952.2 1822 35.8
Solyc01g096110.3 Solanum lycopersicum HOM05D004435 ORTHO05D005103 3.0e-274 949.9 1817 35.6
CAN.G1415.18 Capsicum annuum HOM05D004435 ORTHO05D005103 8.7e-274 948.3 1824 35.4
EL10Ac1g00244 Beta vulgaris HOM05D004435 ORTHO05D005103 2.5e-273 946.8 1825 35.6
HanXRQChr17g0563351 Helianthus annuus HOM05D004435 ORTHO05D005103 2.2e-272 943.7 1789 35.6
Sopen01g039830 Solanum pennellii HOM05D004435 ORTHO05D005103 2.8e-272 943.3 1822 35.5
ClCG05G000720 Citrullus lanatus HOM05D004435 ORTHO05D005103 3.7e-272 943.0 1987 34.1
Cc02_g39580 Coffea canephora HOM05D004435 ORTHO05D005103 1.4e-271 941.0 1842 35.9
BolC4t21789H Brassica oleracea HOM05D004435 ORTHO05D005103 5.3e-271 939.1 1974 33.5
Thhalv10001279m.g Eutrema salsugineum HOM05D004435 ORTHO05D005103 3.4e-270 936.4 1967 33.4
Psat4g214760 Pisum sativum HOM05D004435 ORTHO05D005103 3.4e-270 936.4 1709 36.2
AT2G46560 Arabidopsis thaliana HOM05D004435 ORTHO05D005103 4.5e-270 936.0 1976 33.8
Ah.05g179380 Amaranthus hybridus HOM05D004435 ORTHO05D005103 2.2e-269 933.7 1828 35.5
BraA05t19122Z Brassica rapa HOM05D004435 ORTHO05D005103 2.9e-269 933.3 1976 33.1
AUR62004511 Chenopodium quinoa HOM05D004435 ORTHO05D005103 3.8e-269 932.9 1817 35.9
Zm00001eb356500 Zea mays HOM05D004435 ORTHO05D005103 8.5e-269 931.8 1804 35.5
C04p01360 Brassica napus HOM05D004435 ORTHO05D005103 1.9e-268 930.6 1974 33.3
A05p01210 Brassica napus HOM05D004435 ORTHO05D005103 7.2e-268 928.7 1977 33.0
AL4G45990 Arabidopsis lyrata HOM05D004435 ORTHO05D005103 9.4e-268 928.3 1972 33.5
Sp4g28610 Schrenkiella parvula HOM05D004435 ORTHO05D005103 3.0e-266 923.3 1976 32.8
BcaC02g12673 Brassica carinata HOM05D004435 ORTHO05D005103 6.7e-266 922.2 1976 33.4
Phvul.010G115000 Phaseolus vulgaris HOM05D004435 ORTHO05D005103 1.1e-263 914.8 1867 35.2
Hund27186 Selenicereus undatus HOM05D004435 ORTHO05D005103 4.7e-259 899.4 1815 34.8
Lsat_1_v5_gn_4_33701 Lactuca sativa HOM05D004435 ORTHO05D005103 3.9e-258 896.3 1640 36.6
Lj7C498G9 Lonicera japonica HOM05D004435 ORTHO05D005103 1.6e-246 857.8 1416 38.3
ECA234G2843 Erigeron canadensis HOM05D004435 ORTHO05D005103 2.3e-242 844.0 1672 34.9
GSVIVG01027171001 Vitis vinifera HOM05D004435 ORTHO05D005103 9.8e-241 838.6 1807 34.4
CDE10G1324 Ceratophyllum demersum HOM05D004435 ORTHO05D005103 2.0e-238 830.9 1832 33.5
Nitab4.5_0007244g0030 Nicotiana tabacum HOM05D004435 ORTHO05D005103 8.0e-227 792.3 1389 37.9
unitig_736.g22808 Utricularia gibba HOM05D004435 ORTHO05D005103 3.4e-225 786.9 1810 31.8
Nitab4.5_0001763g0010 Nicotiana tabacum HOM05D004435 ORTHO05D005103 2.4e-223 780.8 1467 36.5
Thecc.01G340200 Theobroma cacao HOM05D004435 ORTHO05D005103 1.9e-204 718.0 1185 39.3
Mapoly0001s0466 Marchantia polymorpha HOM05D004435 ORTHO05D005103 2.8e-179 634.4 1641 29.6
Sc01g0002520 Simmondsia chinensis HOM05D004435 ORTHO05D005103 1.1e-178 632.5 1172 36.1
Pp3c3_34200 Physcomitrium patens HOM05D004435 ORTHO05D005103 2.3e-173 614.8 1935 28.0
HPP92_020188 Vanilla planifolia HOM05D004435 ORTHO05D005103 1.2e-169 602.4 1219 34.9
TPR.G20238 Trifolium pratense HOM05D004435 ORTHO05D005103 1.7e-168 598.6 1379 33.0
ATR0028G001 Amborella trichopoda HOM05D004435 ORTHO05D005103 1.9e-167 595.1 354 86.2
DCAR_008669 Daucus carota HOM05D004435 ORTHO05D005103 9.0e-162 576.2 1232 33.4
SEGI_19519 Sequoiadendron giganteum HOM05D004435 ORTHO05D005103 4.1e-146 524.2 976 35.3
CARHR141910 Cardamine hirsuta HOM05D004435 ORTHO05D005103 1.3e-136 492.7 1061 32.8
Hma1.2p1_0101F.1_g049210 Hydrangea macrophylla HOM05D004435 ORTHO05D005103 8.0e-134 483.4 489 53.0
Carub.0004s2928 Capsella rubella HOM05D004435 ORTHO05D005103 1.5e-127 462.6 761 37.8
Cpa.g.c29521 Carica papaya HOM05D004435 ORTHO05D005103 1.2e-126 459.5 461 53.1
CARHR141900 Cardamine hirsuta HOM05D004435 ORTHO05D005103 1.0e-125 456.4 746 37.8
Aa31LG1G27940 Aethionema arabicum HOM05D004435 ORTHO05D005103 1.4e-125 456.1 737 38.5
BcaC02g12678 Brassica carinata HOM05D004435 ORTHO05D005103 2.2e-123 448.7 749 37.5
ATR0242G001 Amborella trichopoda HOM05D004435 ORTHO05D005103 2.2e-120 438.7 230 97.4
HPP92_020189 Vanilla planifolia HOM05D004435 ORTHO05D005103 7.0e-114 417.2 746 37.8
Hma1.2p1_0101F.1_g049270 Hydrangea macrophylla HOM05D004435 ORTHO05D005103 4.7e-110 404.4 712 36.4
SEGI_18144 Sequoiadendron giganteum HOM05D004435 ORTHO05D005103 1.8e-101 375.9 752 37.0
DCAR_008668 Daucus carota HOM05D004435 ORTHO05D005103 1.6e-94 352.8 285 60.0
Aa31LG1G27950 Aethionema arabicum HOM05D004435 ORTHO05D005103 5.8e-92 344.4 767 32.2
Hma1.2p1_0101F.1_g049280 Hydrangea macrophylla HOM05D004435 ORTHO05D005103 9.8e-92 343.6 510 42.9
AagrBONN_evm.TU.Sc2ySwM_228.2861 Anthoceros agrestis HOM05D004435 ORTHO05D005103 3.5e-81 308.5 515 37.1
TPR.G20227 Trifolium pratense HOM05D004435 ORTHO05D005103 8.4e-67 260.8 445 36.6
CBR_g19326 Chara braunii HOM05D004435 ORTHO05D005103 2.9e-59 235.7 413 36.6
Os01g0552000 Oryza sativa ssp. japonica HOM05D004435 ORTHO05D005103 4.2e-42 178.7 271 38.0
TAR374G0936 Trochodendron aralioides HOM05D004435 ORTHO05D005103 2.6e-36 159.5 499 29.5
Peaxi162Scf00345g00113 Petunia axillaris HOM05D002646 ORTHO05D002782 1.3e-35 157.1 287 37.6
MCO11G580 Micromonas commoda HOM05D004435 ORTHO05D005103 3.2e-34 152.5 234 39.7
Cfa023431 Carpinus fangiana HOM05D004435 ORTHO05D005103 1.6e-33 150.2 415 29.9
Glyma.08G280100 Glycine max HOM05D004435 ORTHO05D005103 3.8e-27 129.0 88 75.0
Cpa.g.c42981 Carica papaya HOM05D004435 ORTHO05D005103 6.1e-25 121.7 217 34.1
BcaC02g12668 Brassica carinata HOM05D004435 ORTHO05D005103 6.3e-22 111.7 200 36.5
Cre04.g223000 Chlamydomonas reinhardtii HOM05D004435 ORTHO05D005103 2.4e-21 109.8 139 44.6
Aa31LG1G27960 Aethionema arabicum HOM05D004435 ORTHO05D005103 2.0e-20 106.7 201 34.8
AagrBONN_evm.TU.Sc2ySwM_228.2860 Anthoceros agrestis HOM05D004435 ORTHO05D005103 4.5e-20 105.5 282 29.4
Lj7A498G38 Lonicera japonica HOM05D004435 ORTHO05D005103 1.0e-16 94.4 199 31.7
DCAR_008666 Daucus carota HOM05D004435 ORTHO05D005103 7.5e-15 88.2 206 30.6
DCAR_008667 Daucus carota HOM05D004435 ORTHO05D005103 7.5e-15 88.2 206 30.6
Nitab4.5_0007244g0040 Nicotiana tabacum HOM05D004435 ORTHO05D005103 7.5e-15 88.2 123 39.8
MapolyY_B0006 Marchantia polymorpha HOM05D004435 ORTHO05D005103 2.8e-14 86.3 200 30.5
Psat4g016800 Pisum sativum HOM05D004435 ORTHO05D005103 1.4e-08 67.4 83 37.3
Psat5g173880 Pisum sativum HOM05D004435 ORTHO05D005103 5.2e-08 65.5 168 31.5
Psat5g173920 Pisum sativum HOM05D004435 ORTHO05D005103 5.2e-08 65.5 168 31.5


User provided reference genes

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