Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0605G013 Amborella trichopoda HOM05D005285 ORTHO05D006829 7.0e-220 766.9 372 100.0
Dinv09380 Davidia involucrata HOM05D005285 ORTHO05D006829 3.3e-169 598.6 367 78.2
MBI04_g14265_MAGBIO Magnolia biondii HOM05D005285 ORTHO05D006829 1.1e-167 593.6 367 78.7
Actinidia20684 Actinidia chinensis HOM05D005285 ORTHO05D006829 9.0e-167 590.5 366 76.5
TAR636G1692 Trochodendron aralioides HOM05D005285 ORTHO05D006829 2.6e-166 589.0 369 76.7
Nn7g36086 Nelumbo nucifera HOM05D005285 ORTHO05D006829 2.9e-165 585.5 369 76.2
PSO339G1127 Papaver somniferum HOM05D005285 ORTHO05D006829 4.9e-165 584.7 372 74.7
GSVIVG01032048001 Vitis vinifera HOM05D005285 ORTHO05D006829 7.1e-164 580.9 369 75.3
CSS0013341 Camellia sinensis var. sinensis HOM05D005285 ORTHO05D006829 1.2e-163 580.1 366 76.2
Lj9A629T99 Lonicera japonica HOM05D005285 ORTHO05D006829 1.2e-163 580.1 364 76.1
PSO384G1382 Papaver somniferum HOM05D005285 ORTHO05D006829 1.6e-163 579.7 372 74.2
TWI09G0675 Tripterygium wilfordii HOM05D005285 ORTHO05D006829 2.1e-163 579.3 366 75.1
Hma1.2p1_1011F.1_g247500 Hydrangea macrophylla HOM05D005285 ORTHO05D006829 4.6e-163 578.2 391 72.4
Gohir.A08G026900 Gossypium hirsutum HOM05D005285 ORTHO05D006829 3.0e-162 575.5 366 76.5
Cpa.g.sc234.2 Carica papaya HOM05D005285 ORTHO05D006829 6.7e-162 574.3 368 74.7
Cc02_g27470 Coffea canephora HOM05D005285 ORTHO05D006829 2.5e-161 572.4 366 74.9
Manes.10G147800 Manihot esculenta HOM05D005285 ORTHO05D006829 2.5e-161 572.4 366 74.6
Cfa010729 Carpinus fangiana HOM05D005285 ORTHO05D006829 5.7e-161 571.2 367 75.5
Haze_03242 Corylus avellana HOM05D005285 ORTHO05D006829 7.4e-161 570.9 367 74.9
Gorai.004G035700 Gossypium raimondii HOM05D005285 ORTHO05D006829 7.4e-161 570.9 366 76.0
Potri.001G271100 Populus trichocarpa HOM05D005285 ORTHO05D006829 7.4e-161 570.9 367 74.9
Thecc.01G414500 Theobroma cacao HOM05D005285 ORTHO05D006829 9.6e-161 570.5 370 74.3
Duzib268G1126 Durio zibethinus HOM05D005285 ORTHO05D006829 1.3e-160 570.1 366 74.9
Rhsim01G0131200 Rhododendron simsii HOM05D005285 ORTHO05D006829 1.3e-160 570.1 365 74.2
CsaV3_3G032330 Cucumis sativus L. HOM05D005285 ORTHO05D006829 2.1e-160 569.3 368 73.1
Gohir.D08G037700 Gossypium hirsutum HOM05D005285 ORTHO05D006829 6.3e-160 567.8 366 75.4
Lsat_1_v5_gn_1_109141 Lactuca sativa HOM05D005285 ORTHO05D006829 8.2e-160 567.4 367 73.6
MELO3C023957.2 Cucumis melo HOM05D005285 ORTHO05D006829 1.8e-159 566.2 368 73.1
ECA248G0026 Erigeron canadensis HOM05D005285 ORTHO05D006829 1.8e-159 566.2 366 73.2
Sed0014745 Sechium edule HOM05D005285 ORTHO05D006829 3.1e-159 565.5 366 73.5
Aqoxy2G00109 Aquilegia oxysepala HOM05D005285 ORTHO05D006829 4.1e-159 565.1 366 73.8
QL04p004838 Quercus lobata HOM05D005285 ORTHO05D006829 4.1e-159 565.1 368 74.2
MSTRG.20606 Avicennia marina HOM05D005285 ORTHO05D006829 5.3e-159 564.7 367 73.8
CDE04G1667 Ceratophyllum demersum HOM05D005285 ORTHO05D006829 6.9e-159 564.3 370 73.2
Ciclev10031943m.g Citrus clementina HOM05D005285 ORTHO05D006829 6.9e-159 564.3 366 74.0
Eucgr.J01257 Eucalyptus grandis HOM05D005285 ORTHO05D006829 9.0e-159 563.9 366 74.0
SEGI_06931 Sequoiadendron giganteum HOM05D005285 ORTHO05D006829 9.0e-159 563.9 374 72.2
PGR044G0372 Punica granatum HOM05D005285 ORTHO05D006829 1.5e-158 563.1 368 73.4
DCAR_029637 Daucus carota HOM05D005285 ORTHO05D006829 4.5e-158 561.6 366 74.3
ClCG10G012540 Citrullus lanatus HOM05D005285 ORTHO05D006829 7.6e-158 560.8 365 72.9
Peaxi162Scf00042g00510 Petunia axillaris HOM05D005285 ORTHO05D006829 1.7e-157 559.7 367 73.6
SalBow5G3096 Salvia bowleyana HOM05D005285 ORTHO05D006829 2.9e-157 558.9 366 74.3
CANSAT21G0587 Cannabis sativa HOM05D005285 ORTHO05D006829 3.8e-157 558.5 368 73.4
Oeu064272.1 Olea europaea HOM05D005285 ORTHO05D006829 8.5e-157 557.4 364 73.6
TWI53G0546 Tripterygium wilfordii HOM05D005285 ORTHO05D006829 8.5e-157 557.4 366 72.7
THA.LOC104819060 Tarenaya hassleriana HOM05D005285 ORTHO05D006829 1.1e-156 557.0 366 71.6
Nitab4.5_0002012g0040 Nicotiana tabacum HOM05D005285 ORTHO05D006829 1.4e-156 556.6 364 73.1
SalBow5G3836 Salvia bowleyana HOM05D005285 ORTHO05D006829 1.9e-156 556.2 366 73.8
Eucgr.J01254 Eucalyptus grandis HOM05D005285 ORTHO05D006829 4.2e-156 555.1 366 72.1
Eucgr.J01253 Eucalyptus grandis HOM05D005285 ORTHO05D006829 5.5e-156 554.7 366 71.9
Eucgr.J01256 Eucalyptus grandis HOM05D005285 ORTHO05D006829 5.5e-156 554.7 366 71.9
Hund03676 Selenicereus undatus HOM05D005285 ORTHO05D006829 5.5e-156 554.7 366 73.5
Migut.B01343 Erythranthe guttata HOM05D005285 ORTHO05D006829 7.2e-156 554.3 366 72.7
Nitab4.5_0000050g0030 Nicotiana tabacum HOM05D005285 ORTHO05D006829 7.2e-156 554.3 363 73.6
RcHm_v2.0_Chr1g0314801 Rosa chinensis HOM05D005285 ORTHO05D006829 1.2e-155 553.5 368 72.8
Zm00001eb189240 Zea mays HOM05D005285 ORTHO05D006829 1.2e-155 553.5 365 72.9
A06p39410 Brassica napus HOM05D005285 ORTHO05D006829 2.7e-155 552.4 366 73.8
BraA06t26856Z Brassica rapa HOM05D005285 ORTHO05D006829 2.7e-155 552.4 366 73.8
Sopen10g011740 Solanum pennellii HOM05D005285 ORTHO05D006829 2.7e-155 552.4 367 73.0
FAN03G1002 Fragaria x ananassa HOM05D005285 ORTHO05D006829 7.9e-155 550.8 368 71.2
EL10Ac2g04308 Beta vulgaris HOM05D005285 ORTHO05D006829 1.0e-154 550.4 363 73.8
COL.COLO4_23903 Corchorus olitorius HOM05D005285 ORTHO05D006829 1.0e-154 550.4 360 74.2
FvH4_7g00610 Fragaria vesca HOM05D005285 ORTHO05D006829 1.3e-154 550.1 368 71.5
Os02g0717500 Oryza sativa ssp. japonica HOM05D005285 ORTHO05D006829 1.8e-154 549.7 366 72.4
Thhalv10004473m.g Eutrema salsugineum HOM05D005285 ORTHO05D006829 2.3e-154 549.3 366 72.7
FAN10G3755 Fragaria x ananassa HOM05D005285 ORTHO05D006829 2.3e-154 549.3 368 71.5
FAN06G0391 Fragaria x ananassa HOM05D005285 ORTHO05D006829 3.0e-154 548.9 368 71.5
Lalb_Chr03g0033921 Lupinus albus HOM05D005285 ORTHO05D006829 3.0e-154 548.9 366 71.9
BcaC06g30830 Brassica carinata HOM05D005285 ORTHO05D006829 3.9e-154 548.5 366 73.2
SGA_v2.0_scaffold646G53323 Striga asiatica HOM05D005285 ORTHO05D006829 8.7e-154 547.4 364 73.1
AL8G20280 Arabidopsis lyrata HOM05D005285 ORTHO05D006829 1.1e-153 547.0 366 71.9
unitig_26.g9596 Utricularia gibba HOM05D005285 ORTHO05D006829 1.5e-153 546.6 367 72.2
Hund03675 Selenicereus undatus HOM05D005285 ORTHO05D006829 1.9e-153 546.2 395 68.6
AUR62023050 Chenopodium quinoa HOM05D005285 ORTHO05D006829 2.5e-153 545.8 366 72.1
Phvul.011G213800 Phaseolus vulgaris HOM05D005285 ORTHO05D006829 2.5e-153 545.8 366 71.3
FAN01G1197 Fragaria x ananassa HOM05D005285 ORTHO05D006829 3.3e-153 545.4 368 71.2
MD07G1005600 Malus domestica HOM05D005285 ORTHO05D006829 3.3e-153 545.4 367 71.9
Oeu039102.1 Olea europaea HOM05D005285 ORTHO05D006829 3.3e-153 545.4 367 71.7
Aa31LG11G7560 Aethionema arabicum HOM05D005285 ORTHO05D006829 5.7e-153 544.7 365 72.1
AT5G48020 Arabidopsis thaliana HOM05D005285 ORTHO05D006829 7.4e-153 544.3 366 71.3
Glyma.12G239400 Glycine max HOM05D005285 ORTHO05D006829 7.4e-153 544.3 366 71.3
BolC7t44405H Brassica oleracea HOM05D005285 ORTHO05D006829 9.7e-153 543.9 366 73.0
Carub.0008s0757 Capsella rubella HOM05D005285 ORTHO05D006829 9.7e-153 543.9 365 72.3
VMungo1127G2059 Vigna mungo HOM05D005285 ORTHO05D006829 1.3e-152 543.5 366 71.6
Psat4g195080 Pisum sativum HOM05D005285 ORTHO05D006829 1.6e-152 543.1 365 71.0
Sp2g18470 Schrenkiella parvula HOM05D005285 ORTHO05D006829 2.8e-152 542.3 365 72.9
Medtr8g036165 Medicago truncatula HOM05D005285 ORTHO05D006829 3.7e-152 542.0 366 71.3
arahy.Tifrunner.gnm1.ann1.DICK3U Arachis hypogaea HOM05D005285 ORTHO05D006829 8.2e-152 540.8 366 69.1
MD02G1316300 Malus domestica HOM05D005285 ORTHO05D006829 1.8e-151 539.7 367 71.7
CARHR184290 Cardamine hirsuta HOM05D005285 ORTHO05D006829 2.4e-151 539.3 365 71.8
C07p38860 Brassica napus HOM05D005285 ORTHO05D006829 4.1e-151 538.5 366 72.4
Lj9C629T1 Lonicera japonica HOM05D005285 ORTHO05D006829 1.3e-149 533.5 369 70.5
Ca_23856_v3 Cicer arietinum L. HOM05D005285 ORTHO05D006829 6.5e-149 531.2 366 69.9
vmacro21170 Vaccinium macrocarpon HOM05D005285 ORTHO05D006829 1.1e-148 530.4 418 64.8
Lj3g0011351 Lotus japonicus HOM05D005285 ORTHO05D006829 9.4e-148 527.3 366 69.4
AagrBONN_evm.TU.Sc2ySwM_228.3236 Anthoceros agrestis HOM05D005285 ORTHO05D006829 1.5e-145 520.0 363 68.0
Sabra16G0166500 Salix brachista HOM05D005285 ORTHO05D006829 3.3e-145 518.8 441 61.2
AUR62009369 Chenopodium quinoa HOM05D005285 ORTHO05D006829 1.8e-143 513.1 335 73.1
Lsat_1_v5_gn_1_111020 Lactuca sativa HOM05D005285 ORTHO05D006829 4.1e-143 511.9 366 66.1
FAN01G1198 Fragaria x ananassa HOM05D005285 ORTHO05D006829 2.0e-142 509.6 460 57.4
HanXRQChr11g0330581 Helianthus annuus HOM05D005285 ORTHO05D006829 2.0e-142 509.6 366 66.4
SGA_v2.0_scaffold646G53324 Striga asiatica HOM05D005285 ORTHO05D006829 4.5e-142 508.4 456 57.0
Mapoly0019s0106 Marchantia polymorpha HOM05D005285 ORTHO05D006829 7.7e-142 507.7 366 66.1
ECA248G2079 Erigeron canadensis HOM05D005285 ORTHO05D006829 5.0e-141 505.0 368 65.2
SMO364G0792 Selaginella moellendorffii HOM05D005285 ORTHO05D006829 4.2e-140 501.9 363 64.2
Atru.chr11.2010 Acer truncatum HOM05D005285 ORTHO05D006829 9.4e-140 500.7 360 67.8
Atru.chr11.2632 Acer truncatum HOM05D005285 ORTHO05D006829 3.0e-138 495.7 392 64.5
ECA248G2524 Erigeron canadensis HOM05D005285 ORTHO05D006829 5.2e-138 495.0 368 63.3
QL04p004878 Quercus lobata HOM05D005285 ORTHO05D006829 1.8e-135 486.5 364 64.3
QL04p004868 Quercus lobata HOM05D005285 ORTHO05D006829 8.5e-133 477.6 364 62.6
HanXRQChr11g0330561 Helianthus annuus HOM05D005285 ORTHO05D006829 1.9e-132 476.5 367 61.6
QL04p004849 Quercus lobata HOM05D005285 ORTHO05D006829 6.1e-131 471.5 366 61.5
Pp3c17_23530 Physcomitrium patens HOM05D005285 ORTHO05D006829 7.7e-126 454.5 386 58.0
SHI04065 Sapria himalayana HOM05D000259 ORTHO05D000155 1.0e-125 454.1 521 47.8
Prupe.2G008000 Prunus persica HOM05D005285 ORTHO05D006829 8.5e-125 451.1 272 78.7
Sc11g0009350 Simmondsia chinensis HOM05D005285 ORTHO05D006829 2.0e-118 429.9 274 74.5
Sed0008744 Sechium edule HOM05D005285 ORTHO05D006829 7.7e-118 427.9 351 63.0
HPP92_022786 Vanilla planifolia HOM05D005285 ORTHO05D006829 1.4e-114 417.2 281 71.5
Prupe.2G008200 Prunus persica HOM05D005285 ORTHO05D006829 3.0e-114 416.0 253 77.1
Pp3c14_26250 Physcomitrium patens HOM05D005285 ORTHO05D006829 1.4e-103 380.6 302 62.3
Ca_24082_v3 Cicer arietinum L. HOM05D005285 ORTHO05D006829 1.6e-99 367.1 355 51.8
Cre13.g586400 Chlamydomonas reinhardtii HOM05D005285 ORTHO05D006829 8.0e-99 364.8 387 48.6
Lsat_1_v5_gn_1_72821 Lactuca sativa HOM05D005285 ORTHO05D006829 2.3e-98 363.2 354 52.8
HanXRQChr11g0330591 Helianthus annuus HOM05D005285 ORTHO05D006829 9.9e-81 304.7 232 63.4
Solyc10g037950.2 Solanum lycopersicum HOM05D005285 ORTHO05D006829 9.2e-79 298.1 206 70.4
arahy.Tifrunner.gnm1.ann1.A7HRCY Arachis hypogaea HOM05D005285 ORTHO05D006829 1.2e-73 281.2 271 53.5
HanXRQChr01g0017351 Helianthus annuus HOM05D005285 ORTHO05D006829 2.4e-71 273.5 177 71.8
Eucgr.L03705 Eucalyptus grandis HOM05D005285 ORTHO05D006829 3.0e-69 266.5 178 71.3
TPR.G21737 Trifolium pratense HOM05D005285 ORTHO05D006829 3.0e-69 266.5 164 76.2
Solyc10g037960.3 Solanum lycopersicum HOM05D005285 ORTHO05D006829 2.5e-68 263.5 160 77.5
TPR.G21746 Trifolium pratense HOM05D005285 ORTHO05D006829 1.4e-63 247.7 189 64.0
Ca_24079_v3 Cicer arietinum L. HOM05D005285 ORTHO05D006829 4.6e-62 242.7 368 40.2
Cpa.g.sc2760.1 Carica papaya HOM05D005285 ORTHO05D006829 9.3e-55 218.4 182 56.6
Rhsim06G0016300 Rhododendron simsii HOM05D005285 ORTHO05D006829 4.2e-47 193.0 116 78.4
HanXRQChr11g0330601 Helianthus annuus HOM05D005285 ORTHO05D006829 8.2e-43 178.7 106 75.5
Peaxi162Scf00451g00621 Petunia axillaris HOM05D005285 ORTHO05D006829 5.3e-42 176.0 174 55.2
Actinidia21565 Actinidia chinensis HOM05D005285 ORTHO05D006829 1.4e-31 141.4 108 64.8
Oeu039103.1 Olea europaea HOM05D005285 ORTHO05D008854 4.4e-28 129.8 92 68.5
Oeu039101.1 Olea europaea HOM05D000288 ORTHO05D000173 6.9e-26 122.5 95 62.1
Atru.ctg794.7 Acer truncatum HOM05D005285 ORTHO05D037890 3.8e-24 116.7 175 42.9
vmacro21176 Vaccinium macrocarpon HOM05D005285 ORTHO05D006829 1.1e-18 98.6 110 52.7
TPR.G13313 Trifolium pratense HOM05D005285 ORTHO05D413460 1.2e-17 95.1 77 58.4
Atru.chr13.2215 Acer truncatum HOM05D005285 ORTHO05D037890 3.5e-17 93.6 53 79.2
arahy.Tifrunner.gnm1.ann1.J91U4H Arachis hypogaea HOM05D000001 ORTHO05D004533 7.7e-17 92.4 62 64.5
CDE07G0090 Ceratophyllum demersum HOM05D000288 ORTHO05D000173 1.3e-16 91.7 232 29.3
Lsat_1_v5_gn_0_6420 Lactuca sativa HOM05D002112 ORTHO05D007960 9.4e-15 85.5 78 59.0
VMungo1127G1344 Vigna mungo HOM05D000839 ORTHO05D000664 4.7e-14 83.2 48 79.2
arahy.Tifrunner.gnm1.ann1.43BKZS Arachis hypogaea HOM05D000001 ORTHO05D000003 3.3e-12 77.0 53 58.5
Lsat_1_v5_gn_9_64201 Lactuca sativa HOM05D000310 ORTHO05D005377 8.5e-08 62.4 33 87.9
TPR.G1074 Trifolium pratense HOM05D005285 ORTHO05D411165 9.4e-07 58.9 74 41.9


User provided reference genes

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