Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0602G266 Amborella trichopoda HOM05D005092 ORTHO05D006073 9.3e-113 410.2 207 100.0
Gohir.D12G239300 Gossypium hirsutum HOM05D005092 ORTHO05D006073 4.2e-65 251.9 220 66.4
Gorai.008G256400 Gossypium raimondii HOM05D005092 ORTHO05D006073 4.2e-65 251.9 215 67.0
MBI07_g24777_MAGBIO Magnolia biondii HOM05D005092 ORTHO05D006073 9.4e-65 250.8 183 70.5
TAR425G0003 Trochodendron aralioides HOM05D005092 ORTHO05D006073 2.1e-64 249.6 210 68.6
PSO135G0789 Papaver somniferum HOM05D005092 ORTHO05D006073 2.7e-64 249.2 153 81.7
Gohir.A12G238200 Gossypium hirsutum HOM05D005092 ORTHO05D006073 3.6e-64 248.8 222 64.0
CSS0040137 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 4.7e-64 248.4 191 70.7
PSO384G1727 Papaver somniferum HOM05D005092 ORTHO05D006073 4.7e-64 248.4 210 65.7
CDE02G4008 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 1.8e-63 246.5 207 66.7
Potri.001G088300 Populus trichocarpa HOM05D005092 ORTHO05D006073 1.8e-63 246.5 211 64.0
Cfa011974 Carpinus fangiana HOM05D005092 ORTHO05D006073 5.2e-63 245.0 215 62.8
Haze_09102 Corylus avellana HOM05D005092 ORTHO05D006073 5.2e-63 245.0 215 62.8
Nn3g18958 Nelumbo nucifera HOM05D005092 ORTHO05D006073 6.7e-63 244.6 159 78.0
AUR62019873 Chenopodium quinoa HOM05D005092 ORTHO05D006073 8.8e-63 244.2 155 78.7
RcHm_v2.0_Chr7g0186131 Rosa chinensis HOM05D005092 ORTHO05D006073 8.8e-63 244.2 215 62.8
Thecc.03G302300 Theobroma cacao HOM05D005092 ORTHO05D006073 8.8e-63 244.2 216 65.7
FAN08G0879 Fragaria x ananassa HOM05D005092 ORTHO05D006073 1.5e-62 243.4 212 65.1
Cpa.g.sc15.7 Carica papaya HOM05D005092 ORTHO05D006073 2.0e-62 243.0 217 62.7
AUR62007009 Chenopodium quinoa HOM05D005092 ORTHO05D006073 2.6e-62 242.7 155 78.7
EL10Ac5g12949 Beta vulgaris HOM05D005092 ORTHO05D006073 3.3e-62 242.3 195 65.6
CDE02G0126 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 3.3e-62 242.3 162 76.5
FvH4_5g11660 Fragaria vesca HOM05D005092 ORTHO05D006073 3.3e-62 242.3 212 64.6
FAN18G1279 Fragaria x ananassa HOM05D005092 ORTHO05D006073 3.3e-62 242.3 212 64.6
FAN18G3046 Fragaria x ananassa HOM05D005092 ORTHO05D006073 3.3e-62 242.3 212 64.6
CDE08G0689 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 4.4e-62 241.9 208 63.9
FAN13G0604 Fragaria x ananassa HOM05D005092 ORTHO05D006073 7.5e-62 241.1 212 64.6
HanXRQChr07g0190751 Helianthus annuus HOM05D005092 ORTHO05D006073 7.5e-62 241.1 178 70.8
Nitab4.5_0002367g0080 Nicotiana tabacum HOM05D005092 ORTHO05D006073 9.7e-62 240.7 177 71.8
Nitab4.5_0006302g0010 Nicotiana tabacum HOM05D005092 ORTHO05D006073 9.7e-62 240.7 177 71.8
DCAR_006514 Daucus carota HOM05D005092 ORTHO05D006073 1.7e-61 240.0 197 66.5
Sabra01G0064600 Salix brachista HOM05D005092 ORTHO05D006073 1.7e-61 240.0 217 60.8
CANSAT21G1519 Cannabis sativa HOM05D005092 ORTHO05D006073 2.2e-61 239.6 154 79.2
Ciclev10022161m.g Citrus clementina HOM05D005092 ORTHO05D006073 2.2e-61 239.6 219 62.6
Cc08_g16360 Coffea canephora HOM05D005092 ORTHO05D006073 2.2e-61 239.6 207 62.3
Manes.01G045210 Manihot esculenta HOM05D005092 ORTHO05D006073 2.2e-61 239.6 155 78.1
Nitab4.5_0004515g0010 Nicotiana tabacum HOM05D005092 ORTHO05D006073 2.8e-61 239.2 199 65.3
QL02p029645 Quercus lobata HOM05D005092 ORTHO05D006073 2.8e-61 239.2 208 63.9
FAN04G2351 Fragaria x ananassa HOM05D005092 ORTHO05D006073 3.7e-61 238.8 212 63.7
Lj4g0014821 Lotus japonicus HOM05D005092 ORTHO05D006073 4.8e-61 238.4 208 63.9
Aa31LG2G1490 Aethionema arabicum HOM05D005092 ORTHO05D006073 8.2e-61 237.7 213 62.9
AL2G10290 Arabidopsis lyrata HOM05D005092 ORTHO05D006073 8.2e-61 237.7 200 64.5
AT1G64510 Arabidopsis thaliana HOM05D005092 ORTHO05D006073 8.2e-61 237.7 195 65.6
BolC9t54633H Brassica oleracea HOM05D005092 ORTHO05D006073 8.2e-61 237.7 210 62.9
Ah.12g052820 Amaranthus hybridus HOM05D005092 ORTHO05D006073 1.1e-60 237.3 156 78.2
Lsat_1_v5_gn_6_9541 Lactuca sativa HOM05D005092 ORTHO05D006073 1.4e-60 236.9 154 77.3
Peaxi162Scf00117g00912 Petunia axillaris HOM05D005092 ORTHO05D006073 1.4e-60 236.9 154 77.3
THA.LOC104809322 Tarenaya hassleriana HOM05D005092 ORTHO05D006073 1.4e-60 236.9 173 71.1
BcaC04g22575 Brassica carinata HOM05D005092 ORTHO05D006073 1.8e-60 236.5 210 62.9
C09p17310 Brassica napus HOM05D005092 ORTHO05D006073 1.8e-60 236.5 210 62.4
C09p17730 Brassica napus HOM05D005092 ORTHO05D006073 1.8e-60 236.5 210 62.4
BolC9t54667H Brassica oleracea HOM05D005092 ORTHO05D006073 1.8e-60 236.5 210 62.4
HanXRQChr17g0535041 Helianthus annuus HOM05D005092 ORTHO05D006073 1.8e-60 236.5 208 62.0
Carub.0002s0024 Capsella rubella HOM05D005092 ORTHO05D006073 2.4e-60 236.1 200 63.0
Dinv38813 Davidia involucrata HOM05D005092 ORTHO05D006073 2.4e-60 236.1 154 76.6
Ah.07g197620 Amaranthus hybridus HOM05D005092 ORTHO05D006073 3.1e-60 235.7 210 62.4
Aqoxy7G00063 Aquilegia oxysepala HOM05D005092 ORTHO05D006073 3.1e-60 235.7 152 77.0
A09p14650 Brassica napus HOM05D005092 ORTHO05D006073 4.1e-60 235.3 210 62.4
BraA09t37086Z Brassica rapa HOM05D005092 ORTHO05D006073 4.1e-60 235.3 210 61.9
BraA09t37111Z Brassica rapa HOM05D005092 ORTHO05D006073 4.1e-60 235.3 210 62.4
CiPaw.11G117500 Carya illinoinensis HOM05D005092 ORTHO05D006073 4.1e-60 235.3 219 63.5
Phvul.002G300600 Phaseolus vulgaris HOM05D005092 ORTHO05D006073 4.1e-60 235.3 205 64.9
BcaB07g31497 Brassica carinata HOM05D005092 ORTHO05D006073 7.0e-60 234.6 181 66.9
Ca_17461_v3 Cicer arietinum L. HOM05D005092 ORTHO05D006073 7.0e-60 234.6 208 63.5
Duzib068G1375 Durio zibethinus HOM05D005092 ORTHO05D006073 7.0e-60 234.6 180 72.2
Glyma.08G024900 Glycine max HOM05D005092 ORTHO05D006073 7.0e-60 234.6 220 61.8
BcaB07g31470 Brassica carinata HOM05D005092 ORTHO05D006073 9.1e-60 234.2 150 77.3
COL.COLO4_10743 Corchorus olitorius HOM05D005092 ORTHO05D006073 9.1e-60 234.2 210 62.9
Duzib068G1058 Durio zibethinus HOM05D005092 ORTHO05D006073 9.1e-60 234.2 180 71.7
A09p14390 Brassica napus HOM05D005092 ORTHO05D006073 1.6e-59 233.4 210 61.4
MD06G1111400 Malus domestica HOM05D005092 ORTHO05D006073 1.6e-59 233.4 169 71.0
Sp2g00240 Schrenkiella parvula HOM05D005092 ORTHO05D006073 1.6e-59 233.4 172 70.3
CARHR046440 Cardamine hirsuta HOM05D005092 ORTHO05D006073 2.0e-59 233.0 202 64.4
Dinv37500 Davidia involucrata HOM05D005092 ORTHO05D006073 2.0e-59 233.0 152 76.3
Actinidia04188 Actinidia chinensis HOM05D005092 ORTHO05D006073 2.7e-59 232.6 206 63.1
arahy.Tifrunner.gnm1.ann1.CJJ4VI Arachis hypogaea HOM05D005092 ORTHO05D006073 2.7e-59 232.6 153 75.2
Lalb_Chr09g0332211 Lupinus albus HOM05D005092 ORTHO05D006073 3.5e-59 232.3 217 60.8
Thhalv10023690m.g Eutrema salsugineum HOM05D005092 ORTHO05D006073 4.5e-59 231.9 172 70.9
MD14G1132700 Malus domestica HOM05D005092 ORTHO05D006073 4.5e-59 231.9 154 74.7
arahy.Tifrunner.gnm1.ann1.99ISIC Arachis hypogaea HOM05D005092 ORTHO05D006073 5.9e-59 231.5 153 74.5
Hma1.2p1_0440F.1_g153550 Hydrangea macrophylla HOM05D005092 ORTHO05D006073 1.0e-58 230.7 156 75.6
Glyma.05G218800 Glycine max HOM05D005092 ORTHO05D006073 1.3e-58 230.3 154 76.6
Solyc08g082690.2 Solanum lycopersicum HOM05D005092 ORTHO05D006073 1.3e-58 230.3 155 74.2
Sopen08g030910 Solanum pennellii HOM05D005092 ORTHO05D006073 1.3e-58 230.3 155 74.2
PGSC0003DMG400012136 Solanum tuberosum HOM05D005092 ORTHO05D006073 1.3e-58 230.3 155 74.2
Medtr8g099720 Medicago truncatula HOM05D005092 ORTHO05D006073 2.9e-58 229.2 152 75.7
Duzib068G0950 Durio zibethinus HOM05D005092 ORTHO05D006073 6.5e-58 228.0 181 68.5
CSS0048233 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 8.5e-58 227.6 180 68.9
CSS0022378 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.1e-57 227.3 180 68.9
CSS0038140 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.1e-57 227.3 180 68.9
Prupe.5G124200 Prunus persica HOM05D005092 ORTHO05D006073 1.1e-57 227.3 166 71.1
Psat7g023960 Pisum sativum HOM05D005092 ORTHO05D006073 7.2e-57 224.6 206 61.2
TWI81G0988 Tripterygium wilfordii HOM05D005092 ORTHO05D006073 7.2e-57 224.6 217 60.8
Sed0021119 Sechium edule HOM05D005092 ORTHO05D006073 2.1e-56 223.0 198 60.6
Sc07g0010130 Simmondsia chinensis HOM05D005092 ORTHO05D006073 2.7e-56 222.6 188 64.9
Atru.chr9.1939 Acer truncatum HOM05D005092 ORTHO05D006073 8.0e-56 221.1 157 69.4
PGR031G0045 Punica granatum HOM05D005092 ORTHO05D006073 6.8e-55 218.0 270 51.1
Actinidia22183 Actinidia chinensis HOM05D005092 ORTHO05D006073 8.8e-55 217.6 181 66.9
Rhsim02G0248400 Rhododendron simsii HOM05D005092 ORTHO05D006073 2.6e-54 216.1 194 62.4
BcaC04g22614 Brassica carinata HOM05D005092 ORTHO05D006073 7.5e-54 214.5 198 60.6
HanXRQChr17g0534641 Helianthus annuus HOM05D005092 ORTHO05D006073 1.3e-53 213.8 121 84.3
Lj2A163T69 Lonicera japonica HOM05D005092 ORTHO05D006073 2.8e-53 212.6 219 54.3
TPR.G3401 Trifolium pratense HOM05D005092 ORTHO05D006073 8.3e-53 211.1 186 62.4
CSS0033480 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.4e-52 210.3 200 62.0
Nitab4.5_0015800g0020 Nicotiana tabacum HOM05D005092 ORTHO05D006073 5.4e-52 208.4 205 58.0
Lj8A204G63 Lonicera japonica HOM05D005092 ORTHO05D006073 3.5e-51 205.7 163 63.8
Lalb_Chr14g0362701 Lupinus albus HOM05D005092 ORTHO05D006073 7.7e-51 204.5 169 65.1
HPP92_003891 Vanilla planifolia HOM05D005092 ORTHO05D006073 7.7e-51 204.5 202 56.9
SalBow8G0392 Salvia bowleyana HOM05D005092 ORTHO05D006073 2.9e-50 202.6 202 54.5
Migut.M00752 Erythranthe guttata HOM05D005092 ORTHO05D006073 5.0e-50 201.8 217 55.3
HPP92_003874 Vanilla planifolia HOM05D003037 ORTHO05D003659 1.9e-49 199.9 213 54.0
MSTRG.14949 Avicennia marina HOM05D005092 ORTHO05D006073 4.2e-49 198.7 206 53.4
Hund11375 Selenicereus undatus HOM05D005092 ORTHO05D006073 7.2e-49 198.0 156 63.5
MELO3C005759.2 Cucumis melo HOM05D005092 ORTHO05D006073 1.2e-48 197.2 155 65.8
Peaxi162Scf00074g00540 Petunia axillaris HOM05D005092 ORTHO05D006073 6.1e-48 194.9 172 62.2
unitig_62.g23053 Utricularia gibba HOM05D005092 ORTHO05D006073 1.4e-47 193.7 215 52.6
CsaV3_5G001930 Cucumis sativus L. HOM05D005092 ORTHO05D006073 1.2e-46 190.7 148 66.2
Os03g0843400 Oryza sativa ssp. japonica HOM05D005092 ORTHO05D006073 5.7e-46 188.3 123 76.4
CAN.G567.28 Capsicum annuum HOM05D005092 ORTHO05D006073 1.7e-45 186.8 315 41.3
SGA_v2.0_scaffold34G13767 Striga asiatica HOM05D005092 ORTHO05D006073 2.2e-45 186.4 117 72.6
Zm00001eb064130 Zea mays HOM05D005092 ORTHO05D006073 1.8e-44 183.3 228 48.7
SalBow7G2047 Salvia bowleyana HOM05D005092 ORTHO05D006073 3.1e-44 182.6 183 54.1
SalBow7G3059 Salvia bowleyana HOM05D005092 ORTHO05D006073 3.1e-44 182.6 183 54.1
Migut.M00753 Erythranthe guttata HOM05D005092 ORTHO05D006073 1.6e-43 180.3 178 57.9
GSVIVG01019593001 Vitis vinifera HOM05D005092 ORTHO05D006073 1.6e-43 180.3 102 86.3
vmacro11536 Vaccinium macrocarpon HOM05D005092 ORTHO05D006073 4.3e-41 172.2 178 54.5
Pp3c9_9180 Physcomitrium patens HOM05D005092 ORTHO05D006073 3.6e-40 169.1 163 55.8
Mapoly0115s0060 Marchantia polymorpha HOM05D005092 ORTHO05D006073 2.0e-38 163.3 146 56.2
ECA233G5643 Erigeron canadensis HOM05D005092 ORTHO05D006073 2.6e-38 162.9 113 73.5
Pp3c15_17560 Physcomitrium patens HOM05D005092 ORTHO05D006073 1.7e-37 160.2 126 61.9
Atru.chr10.1577 Acer truncatum HOM05D005092 ORTHO05D006073 7.0e-36 154.8 93 75.3
CBR_g45689 Chara braunii HOM05D005092 ORTHO05D006073 1.6e-35 153.7 119 59.7
SMO141G0012 Selaginella moellendorffii HOM05D005092 ORTHO05D006073 1.6e-35 153.7 106 67.0
SEGI_34901 Sequoiadendron giganteum HOM05D005092 ORTHO05D006073 1.3e-34 150.6 149 56.4
AagrBONN_evm.TU.Sc2ySwM_117.1171 Anthoceros agrestis HOM05D005092 ORTHO05D006073 8.6e-34 147.9 173 46.8
Eucgr.D01771 Eucalyptus grandis HOM05D005092 ORTHO05D006073 1.5e-33 147.1 81 87.7
Sabra03G0103200 Salix brachista HOM05D005092 ORTHO05D006073 2.8e-32 142.9 226 47.3
vmacro22558 Vaccinium macrocarpon HOM05D005092 ORTHO05D006073 1.3e-26 124.0 80 76.2
CSS0046261 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.5e-25 120.6 67 85.1
CSS0048158 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.5e-25 120.6 67 85.1
Nn1g00282 Nelumbo nucifera HOM05D005092 ORTHO05D006073 5.1e-18 95.5 73 65.8
A01p35480 Brassica napus HOM05D005092 ORTHO05D006073 2.6e-14 83.2 50 78.0
Oeu061337.1 Olea europaea HOM05D005092 ORTHO05D006073 8.4e-13 78.2 70 58.6
ClCG01G001790 Citrullus lanatus HOM05D005092 ORTHO05D006073 4.2e-12 75.9 84 51.2
HanXRQChr07g0190051 Helianthus annuus HOM05D005092 ORTHO05D006073 3.5e-11 72.8 132 36.4
A04p11060 Brassica napus HOM05D023372 ORTHO05D024533 2.4e-07 60.1 38 76.3


User provided reference genes

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