Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0602G229 Amborella trichopoda HOM05D005433 ORTHO05D006675 7.4e-139 497.3 267 100.0
Ciclev10009151m.g Citrus clementina HOM05D005433 ORTHO05D006675 2.5e-62 243.0 224 62.5
CiPaw.12G116900 Carya illinoinensis HOM05D005433 ORTHO05D006675 1.3e-61 240.7 230 60.9
QL08p023594 Quercus lobata HOM05D005433 ORTHO05D006675 2.8e-61 239.6 267 56.9
Thecc.07G099400 Theobroma cacao HOM05D005433 ORTHO05D006675 1.8e-60 236.9 221 63.8
Manes.03G104600 Manihot esculenta HOM05D005433 ORTHO05D006675 9.0e-60 234.6 239 60.3
Eucgr.F01178 Eucalyptus grandis HOM05D005433 ORTHO05D006675 3.4e-59 232.6 253 56.1
MBI07_g32542_MAGBIO Magnolia biondii HOM05D005433 ORTHO05D006675 7.6e-59 231.5 204 64.2
TAR624G0745 Trochodendron aralioides HOM05D005433 ORTHO05D006675 1.0e-58 231.1 285 54.7
EL10Ac4g08262 Beta vulgaris HOM05D005433 ORTHO05D006675 6.5e-58 228.4 248 57.7
Nitab4.5_0001208g0170 Nicotiana tabacum HOM05D005433 ORTHO05D006675 1.1e-57 227.6 273 54.9
GSVIVG01014263001 Vitis vinifera HOM05D005433 ORTHO05D006675 1.4e-57 227.3 249 58.6
Cfa020622 Carpinus fangiana HOM05D005433 ORTHO05D006675 1.9e-57 226.9 232 59.1
Peaxi162Scf00027g01311 Petunia axillaris HOM05D005433 ORTHO05D006675 3.2e-57 226.1 231 58.9
PGSC0003DMG400021311 Solanum tuberosum HOM05D005433 ORTHO05D006675 3.2e-57 226.1 268 53.0
CDE10G1174 Ceratophyllum demersum HOM05D005433 ORTHO05D006675 4.2e-57 225.7 248 55.6
Duzib213G0446 Durio zibethinus HOM05D005433 ORTHO05D006675 7.1e-57 224.9 270 56.3
ClCG05G009210 Citrullus lanatus HOM05D005433 ORTHO05D006675 1.6e-56 223.8 223 58.3
Nn1g06380 Nelumbo nucifera HOM05D005433 ORTHO05D006675 1.6e-56 223.8 279 53.4
Nitab4.5_0005232g0030 Nicotiana tabacum HOM05D005433 ORTHO05D006675 1.6e-56 223.8 271 54.6
Cpa.g.sc80.11 Carica papaya HOM05D005433 ORTHO05D006675 2.1e-56 223.4 245 57.1
Sc16g0007310 Simmondsia chinensis HOM05D005433 ORTHO05D006675 2.7e-56 223.0 271 52.0
Haze_09383 Corylus avellana HOM05D005433 ORTHO05D006675 3.5e-56 222.6 264 53.0
VMungo0331G0725 Vigna mungo HOM05D005433 ORTHO05D006675 4.6e-56 222.2 274 53.6
PGR083G2284 Punica granatum HOM05D005433 ORTHO05D006675 6.0e-56 221.9 259 55.2
Hma1.2p1_0416F.1_g148475 Hydrangea macrophylla HOM05D005433 ORTHO05D006675 1.0e-55 221.1 230 58.3
CSS0020446 Camellia sinensis var. sinensis HOM05D005433 ORTHO05D006675 1.3e-55 220.7 273 52.4
CsaV3_3G019570 Cucumis sativus L. HOM05D005433 ORTHO05D006675 1.3e-55 220.7 268 52.2
MD03G1235600 Malus domestica HOM05D005433 ORTHO05D006675 1.8e-55 220.3 275 53.5
Gohir.A01G060400 Gossypium hirsutum HOM05D005433 ORTHO05D006675 3.0e-55 219.5 265 55.1
Gohir.D01G046900 Gossypium hirsutum HOM05D005433 ORTHO05D006675 3.9e-55 219.2 268 54.5
Potri.011G097800 Populus trichocarpa HOM05D005433 ORTHO05D006675 5.1e-55 218.8 239 57.7
Gorai.002G066400 Gossypium raimondii HOM05D005433 ORTHO05D006675 1.1e-54 217.6 268 54.1
Sopen10g003020 Solanum pennellii HOM05D005433 ORTHO05D006675 1.1e-54 217.6 227 58.6
Cc05_g11610 Coffea canephora HOM05D005433 ORTHO05D006675 1.5e-54 217.2 238 55.9
arahy.Tifrunner.gnm1.ann1.H96BGA Arachis hypogaea HOM05D005433 ORTHO05D006675 3.3e-54 216.1 242 56.2
TWI38G0185 Tripterygium wilfordii HOM05D005433 ORTHO05D006675 4.3e-54 215.7 207 59.4
AUR62036145 Chenopodium quinoa HOM05D005433 ORTHO05D006675 5.7e-54 215.3 248 54.8
PSO675G6755 Papaver somniferum HOM05D005433 ORTHO05D006675 5.7e-54 215.3 230 57.0
Lsat_1_v5_gn_5_127421 Lactuca sativa HOM05D005433 ORTHO05D006675 7.4e-54 214.9 220 55.9
Lalb_Chr25g0286191 Lupinus albus HOM05D005433 ORTHO05D006675 7.4e-54 214.9 226 57.5
Solyc10g007120.4 Solanum lycopersicum HOM05D005433 ORTHO05D006675 7.4e-54 214.9 263 54.0
CANSAT35G1219 Cannabis sativa HOM05D005433 ORTHO05D006675 9.6e-54 214.5 248 54.8
Sabra11G0091300 Salix brachista HOM05D005433 ORTHO05D006675 9.6e-54 214.5 235 57.4
AL3G27460 Arabidopsis lyrata HOM05D005433 ORTHO05D006675 4.8e-53 212.2 203 61.1
CAN.G1119.17 Capsicum annuum HOM05D005433 ORTHO05D006675 6.3e-53 211.8 283 48.8
arahy.Tifrunner.gnm1.ann1.7LX6SY Arachis hypogaea HOM05D005433 ORTHO05D006675 8.2e-53 211.5 237 56.5
Phvul.010G112200 Phaseolus vulgaris HOM05D005433 ORTHO05D006675 8.2e-53 211.5 256 52.7
PSO541G1927 Papaver somniferum HOM05D005433 ORTHO05D006675 1.1e-52 211.1 217 58.5
FAN16G0161 Fragaria x ananassa HOM05D005433 ORTHO05D006675 1.4e-52 210.7 258 52.7
Actinidia35236 Actinidia chinensis HOM05D005433 ORTHO05D006675 1.8e-52 210.3 270 53.3
Glyma.12G227200 Glycine max HOM05D005433 ORTHO05D006675 1.8e-52 210.3 267 52.4
Thhalv10021284m.g Eutrema salsugineum HOM05D005433 ORTHO05D006675 2.4e-52 209.9 203 59.1
FAN25G0011 Fragaria x ananassa HOM05D005433 ORTHO05D006675 3.1e-52 209.5 259 52.5
Rhsim04G0023000 Rhododendron simsii HOM05D005433 ORTHO05D006675 4.1e-52 209.1 289 49.8
DCAR_019573 Daucus carota HOM05D005433 ORTHO05D006675 1.5e-51 207.2 254 53.1
MSTRG.15245 Avicennia marina HOM05D005433 ORTHO05D006675 2.0e-51 206.8 252 53.6
Ca_03534_v3 Cicer arietinum L. HOM05D005433 ORTHO05D006675 2.6e-51 206.5 276 50.0
Ca_30930_v3 Cicer arietinum L. HOM05D005433 ORTHO05D006675 2.6e-51 206.5 276 50.0
Aqoxy4G00583 Aquilegia oxysepala HOM05D005433 ORTHO05D006675 3.4e-51 206.1 256 53.5
Aa31LG8G2320 Aethionema arabicum HOM05D005433 ORTHO05D006675 5.9e-51 205.3 207 58.5
FAN11G1719 Fragaria x ananassa HOM05D005433 ORTHO05D006675 5.9e-51 205.3 283 49.5
ECA234G3266 Erigeron canadensis HOM05D005433 ORTHO05D006675 7.6e-51 204.9 223 57.0
FvH4_3g19170 Fragaria vesca HOM05D005433 ORTHO05D006675 1.3e-50 204.1 274 49.3
HanXRQChr10g0302491 Helianthus annuus HOM05D005433 ORTHO05D006675 1.7e-50 203.8 240 53.8
BraA05t22254Z Brassica rapa HOM05D005433 ORTHO05D006675 2.2e-50 203.4 208 56.7
A05p34330 Brassica napus HOM05D005433 ORTHO05D006675 2.9e-50 203.0 208 56.7
BcaB06g29536 Brassica carinata HOM05D005433 ORTHO05D006675 3.8e-50 202.6 262 50.0
C05p52110 Brassica napus HOM05D005433 ORTHO05D006675 3.8e-50 202.6 262 50.0
BolC5t33896H Brassica oleracea HOM05D005433 ORTHO05D006675 3.8e-50 202.6 262 50.0
Lj3g0015051 Lotus japonicus HOM05D005433 ORTHO05D006675 3.8e-50 202.6 269 49.8
AT3G15110 Arabidopsis thaliana HOM05D005433 ORTHO05D006675 5.0e-50 202.2 242 53.3
THA.LOC104810456 Tarenaya hassleriana HOM05D005433 ORTHO05D006675 5.0e-50 202.2 269 50.2
SalBow8G0584 Salvia bowleyana HOM05D005433 ORTHO05D006675 6.5e-50 201.8 263 51.7
RcHm_v2.0_Chr5g0032261 Rosa chinensis HOM05D005433 ORTHO05D006675 8.4e-50 201.4 275 48.7
Carub.0003s1475 Capsella rubella HOM05D005433 ORTHO05D006675 1.4e-49 200.7 204 57.8
SGA_v2.0_scaffold73G24224 Striga asiatica HOM05D005433 ORTHO05D006675 3.2e-49 199.5 273 48.0
FAN21G1059 Fragaria x ananassa HOM05D005433 ORTHO05D006675 4.2e-49 199.1 282 50.0
Sp3g13310 Schrenkiella parvula HOM05D005433 ORTHO05D006675 5.5e-49 198.7 265 50.2
Gorai.007G325500 Gossypium raimondii HOM05D005433 ORTHO05D006675 1.2e-48 197.6 266 50.4
Gohir.D11G306500 Gossypium hirsutum HOM05D005433 ORTHO05D006675 1.6e-48 197.2 277 49.1
vmacro09517 Vaccinium macrocarpon HOM05D005433 ORTHO05D006675 2.7e-48 196.4 329 44.1
Migut.M00771 Erythranthe guttata HOM05D005433 ORTHO05D006675 2.3e-47 193.4 242 52.5
Psat5g241440 Pisum sativum HOM05D005433 ORTHO05D006675 3.0e-47 193.0 238 49.2
Gohir.A11G286600 Gossypium hirsutum HOM05D005433 ORTHO05D006675 8.7e-47 191.4 271 48.0
Atru.chr2.2384 Acer truncatum HOM05D005433 ORTHO05D006675 1.5e-46 190.7 185 58.9
Os02g0307800 Oryza sativa ssp. japonica HOM05D005433 ORTHO05D006675 3.3e-46 189.5 262 50.4
unitig_85.g27411 Utricularia gibba HOM05D005433 ORTHO05D006675 2.2e-45 186.8 198 57.6
unitig_86.g29837 Utricularia gibba HOM05D005433 ORTHO05D006675 2.2e-45 186.8 198 57.6
Zm00001eb235270 Zea mays HOM05D005433 ORTHO05D006675 2.2e-45 186.8 231 52.8
Medtr2g078540 Medicago truncatula HOM05D005433 ORTHO05D006675 2.8e-45 186.4 235 50.6
TPR.G17538 Trifolium pratense HOM05D005433 ORTHO05D006675 3.7e-45 186.0 227 50.2
Glyma.06G235100 Glycine max HOM05D005433 ORTHO05D006675 1.1e-44 184.5 209 52.6
MSTRG.12890 Avicennia marina HOM05D005433 ORTHO05D006675 1.7e-42 177.2 202 54.5
Dinv14949 Davidia involucrata HOM05D005433 ORTHO05D006675 7.9e-40 168.3 202 58.4
Lj2g0011732 Lotus japonicus HOM05D005433 ORTHO05D006675 3.9e-39 166.0 237 46.8
Prupe.4G173400 Prunus persica HOM05D005433 ORTHO05D006675 1.5e-38 164.1 176 56.2
Medtr6g042030 Medicago truncatula HOM05D005433 ORTHO05D006675 5.7e-38 162.2 228 47.8
Sed0015039 Sechium edule HOM05D005433 ORTHO05D006675 6.3e-37 158.7 149 59.7
AUR62019491 Chenopodium quinoa HOM05D005433 ORTHO05D006675 1.8e-36 157.1 241 46.9
Migut.H01964 Erythranthe guttata HOM05D005433 ORTHO05D006675 1.8e-36 157.1 204 50.5
Psat1g075280 Pisum sativum HOM05D005433 ORTHO05D006675 3.1e-36 156.4 243 44.4
MD11G1256600 Malus domestica HOM05D005433 ORTHO05D006675 1.2e-35 154.5 206 51.9
arahy.Tifrunner.gnm1.ann1.8TDA44 Arachis hypogaea HOM05D005433 ORTHO05D006675 2.2e-34 150.2 222 44.1
Mapoly0060s0103 Marchantia polymorpha HOM05D005433 ORTHO05D006675 8.5e-34 148.3 212 48.6
TPR.G19712 Trifolium pratense HOM05D005433 ORTHO05D006675 1.1e-33 147.9 214 43.9
arahy.Tifrunner.gnm1.ann1.2X8QJZ Arachis hypogaea HOM05D005433 ORTHO05D006675 4.2e-33 146.0 217 44.2
Lj8A153T41 Lonicera japonica HOM05D005433 ORTHO05D006675 1.6e-32 144.1 142 59.9
Thecc.07G099700 Theobroma cacao HOM05D005433 ORTHO05D006675 2.3e-31 140.2 127 60.6
AagrBONN_evm.TU.Sc2ySwM_368.1222 Anthoceros agrestis HOM05D005433 ORTHO05D006675 3.9e-31 139.4 206 42.7
Pp3c11_19700 Physcomitrium patens HOM05D005433 ORTHO05D006675 5.1e-31 139.0 205 46.8
HPP92_027387 Vanilla planifolia HOM05D005433 ORTHO05D006675 2.2e-29 133.7 200 47.5
Lsat_1_v5_gn_7_42380 Lactuca sativa HOM05D005433 ORTHO05D006675 1.9e-25 120.6 130 57.7
SMO143G0248 Selaginella moellendorffii HOM05D009232 ORTHO05D006675 9.4e-25 118.2 182 41.8
C02p31450 Brassica napus HOM05D005433 ORTHO05D006675 1.2e-24 117.9 129 52.7
SGA_v2.0_scaffold70G23696 Striga asiatica HOM05D005433 ORTHO05D006675 4.7e-24 115.9 122 53.3
Lalb_Chr03g0030801 Lupinus albus HOM05D005433 ORTHO05D006675 1.4e-20 104.4 118 49.2
C09p61630 Brassica napus HOM05D005433 ORTHO05D006675 2.4e-20 103.6 134 51.5
BolC9t59001H Brassica oleracea HOM05D005433 ORTHO05D006675 2.4e-20 103.6 134 51.5
Lsat_1_v5_gn_0_4360 Lactuca sativa HOM05D005433 ORTHO05D006675 2.4e-20 103.6 129 52.7
CBR_g28819 Chara braunii HOM05D005433 ORTHO05D006675 7.0e-20 102.1 225 35.1
EL10Ac5g11588 Beta vulgaris HOM05D005433 ORTHO05D006675 4.7e-16 89.4 71 64.8
Glyma.13G273100 Glycine max HOM05D005433 ORTHO05D006675 3.0e-15 86.7 162 42.6
CARHR090080 Cardamine hirsuta HOM05D005433 ORTHO05D006675 3.4e-14 83.2 73 64.4
Oeu051094.1 Olea europaea HOM05D005433 ORTHO05D006675 8.3e-13 78.6 226 34.1
Oeu051093.1 Olea europaea HOM05D005433 ORTHO05D006675 1.8e-12 77.4 158 39.9
BcaB01g02390 Brassica carinata HOM05D005433 ORTHO05D006675 3.1e-12 76.6 192 38.0
Cre03.g167400 Chlamydomonas reinhardtii HOM05D005433 ORTHO05D006675 3.5e-11 73.2 134 37.3
Lsat_1_v5_gn_4_180780 Lactuca sativa HOM05D005433 ORTHO05D006675 1.3e-10 71.2 60 61.7
MCO01G315 Micromonas commoda HOM05D005433 ORTHO05D006675 6.5e-10 68.9 182 29.1
Oeu055126.1 Olea europaea HOM05D005433 ORTHO05D006675 3.6e-08 63.2 54 68.5
Lsat_1_v5_gn_5_140640 Lactuca sativa HOM05D005433 ORTHO05D006675 1.0e-07 61.6 44 63.6
C01p49410 Brassica napus HOM05D005433 ORTHO05D040690 3.0e-07 60.1 130 36.9
CARHR090070 Cardamine hirsuta HOM05D005433 ORTHO05D006675 3.4e-06 56.6 60 50.0
TAR629G0034 Trochodendron aralioides HOM05D005433 ORTHO05D006675 3.4e-06 56.6 63 55.6


User provided reference genes

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