Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0602G186 Amborella trichopoda HOM05D006908 ORTHO05D008662 2.3e-187 658.7 321 100.0
PSO782G4818 Papaver somniferum HOM05D006908 ORTHO05D008662 2.0e-82 310.1 244 59.4
Nn8g39204 Nelumbo nucifera HOM05D006908 ORTHO05D008662 3.8e-81 305.8 245 58.8
GSVIVG01017098001 Vitis vinifera HOM05D006908 ORTHO05D008662 1.5e-80 303.9 244 58.6
Haze_16403 Corylus avellana HOM05D006908 ORTHO05D008662 2.5e-80 303.1 246 58.1
QL05p023344 Quercus lobata HOM05D006908 ORTHO05D008662 7.2e-80 301.6 246 56.1
CANSAT56G3342 Cannabis sativa HOM05D006908 ORTHO05D008662 2.7e-79 299.7 248 57.3
Rhsim08G0222000 Rhododendron simsii HOM05D006908 ORTHO05D008662 3.0e-78 296.2 244 56.6
Lj3g0017668 Lotus japonicus HOM05D006908 ORTHO05D008662 4.0e-78 295.8 245 58.0
CiPaw.01G238600 Carya illinoinensis HOM05D006908 ORTHO05D008662 8.8e-78 294.7 248 56.0
Dinv38042 Davidia involucrata HOM05D006908 ORTHO05D008662 1.2e-77 294.3 244 57.0
Atru.chr1.3281 Acer truncatum HOM05D006908 ORTHO05D008662 2.6e-77 293.1 249 56.2
Hma1.2p1_0323F.1_g125120 Hydrangea macrophylla HOM05D006908 ORTHO05D008662 3.4e-77 292.7 244 55.3
FAN05G1986 Fragaria x ananassa HOM05D006908 ORTHO05D008662 4.4e-77 292.4 246 55.7
Sopen03g039000 Solanum pennellii HOM05D006908 ORTHO05D008662 4.4e-77 292.4 251 56.6
Ciclev10025928m.g Citrus clementina HOM05D006908 ORTHO05D008662 5.7e-77 292.0 258 55.4
MD17G1194300 Malus domestica HOM05D006908 ORTHO05D008662 7.5e-77 291.6 248 56.9
Glyma.15G014900 Glycine max HOM05D006908 ORTHO05D008662 1.7e-76 290.4 254 56.7
TAR626G0624 Trochodendron aralioides HOM05D006908 ORTHO05D008662 1.7e-76 290.4 269 54.6
vmacro18903 Vaccinium macrocarpon HOM05D006908 ORTHO05D008662 1.7e-76 290.4 244 55.3
VMungo1080G1808 Vigna mungo HOM05D006908 ORTHO05D008662 1.7e-76 290.4 245 58.8
FAN09G3067 Fragaria x ananassa HOM05D006908 ORTHO05D008662 2.8e-76 289.7 246 55.3
Manes.11G045900 Manihot esculenta HOM05D006908 ORTHO05D008662 2.8e-76 289.7 250 58.0
Oeu063957.2 Olea europaea HOM05D006908 ORTHO05D008662 2.8e-76 289.7 246 56.9
PSO063G2605 Papaver somniferum HOM05D006908 ORTHO05D008662 2.8e-76 289.7 244 56.6
Thecc.06G089400 Theobroma cacao HOM05D006908 ORTHO05D008662 6.3e-76 288.5 247 55.9
MSTRG.11073 Avicennia marina HOM05D006908 ORTHO05D008662 8.3e-76 288.1 245 57.6
DCAR_023055 Daucus carota HOM05D006908 ORTHO05D008662 8.3e-76 288.1 248 55.2
CAN.G438.72 Capsicum annuum HOM05D006908 ORTHO05D008662 1.1e-75 287.7 247 56.7
Eucgr.J02986 Eucalyptus grandis HOM05D006908 ORTHO05D008662 1.1e-75 287.7 250 55.2
FvH4_6g31280 Fragaria vesca HOM05D006908 ORTHO05D008662 1.1e-75 287.7 246 54.9
Zm00001eb275430 Zea mays HOM05D006908 ORTHO05D008662 1.1e-75 287.7 246 55.3
Sabra01G0145800 Salix brachista HOM05D006908 ORTHO05D008662 1.4e-75 287.3 249 55.8
PGSC0003DMG400005687 Solanum tuberosum HOM05D006908 ORTHO05D008662 1.8e-75 287.0 252 56.0
CDE02G0011 Ceratophyllum demersum HOM05D006908 ORTHO05D008662 2.4e-75 286.6 248 58.9
Os06g0639300 Oryza sativa ssp. japonica HOM05D006908 ORTHO05D008662 2.4e-75 286.6 247 55.5
Phvul.005G170700 Phaseolus vulgaris HOM05D006908 ORTHO05D008662 3.1e-75 286.2 255 54.9
arahy.Tifrunner.gnm1.ann1.0IDI1A Arachis hypogaea HOM05D006908 ORTHO05D008662 4.1e-75 285.8 245 57.6
arahy.Tifrunner.gnm1.ann1.UK934I Arachis hypogaea HOM05D006908 ORTHO05D008662 4.1e-75 285.8 245 57.6
Lj5C59T9 Lonicera japonica HOM05D006908 ORTHO05D008662 5.3e-75 285.4 246 54.9
Lalb_Chr22g0351301 Lupinus albus HOM05D006908 ORTHO05D008662 5.3e-75 285.4 246 55.7
Actinidia01807 Actinidia chinensis HOM05D006908 ORTHO05D008662 1.6e-74 283.9 244 54.9
PGR102G2040 Punica granatum HOM05D006908 ORTHO05D008662 2.0e-74 283.5 249 56.2
CSS0010187 Camellia sinensis var. sinensis HOM05D006908 ORTHO05D008662 3.5e-74 282.7 244 53.7
HPP92_003725 Vanilla planifolia HOM05D006908 ORTHO05D008662 5.9e-74 282.0 244 54.5
Sc10g0007370 Simmondsia chinensis HOM05D006908 ORTHO05D008662 7.7e-74 281.6 244 57.0
COL.COLO4_30388 Corchorus olitorius HOM05D006908 ORTHO05D008662 1.0e-73 281.2 248 56.0
Nitab4.5_0002308g0060 Nicotiana tabacum HOM05D006908 ORTHO05D008662 1.0e-73 281.2 248 56.0
Duzib160G0703 Durio zibethinus HOM05D006908 ORTHO05D008662 1.7e-73 280.4 247 55.5
Gorai.006G098400 Gossypium raimondii HOM05D006908 ORTHO05D008662 1.7e-73 280.4 247 54.3
RcHm_v2.0_Chr2g0138011 Rosa chinensis HOM05D006908 ORTHO05D008662 1.7e-73 280.4 247 55.1
Hund06614 Selenicereus undatus HOM05D006908 ORTHO05D008662 2.2e-73 280.0 245 54.3
ClCG07G013040 Citrullus lanatus HOM05D006908 ORTHO05D008662 2.9e-73 279.6 249 53.8
TPR.G37174 Trifolium pratense HOM05D006908 ORTHO05D008662 2.9e-73 279.6 247 55.5
HanXRQChr02g0032801 Helianthus annuus HOM05D006908 ORTHO05D008662 6.5e-73 278.5 247 55.9
Medtr2g102040 Medicago truncatula HOM05D006908 ORTHO05D008662 8.5e-73 278.1 246 54.9
CsaV3_3G025130 Cucumis sativus L. HOM05D006908 ORTHO05D008662 2.5e-72 276.6 249 53.8
MELO3C012958.2 Cucumis melo HOM05D006908 ORTHO05D008662 2.7e-71 273.1 249 53.0
Ca_01120_v3 Cicer arietinum L. HOM05D006908 ORTHO05D008662 3.6e-71 272.7 246 54.5
Solyc03g120130.4 Solanum lycopersicum HOM05D006908 ORTHO05D008662 6.1e-71 271.9 235 55.7
Migut.I00872 Erythranthe guttata HOM05D006908 ORTHO05D008662 3.0e-70 269.6 248 55.2
Cc04_g03340 Coffea canephora HOM05D006908 ORTHO05D008662 4.0e-70 269.2 244 51.6
Sed0021689 Sechium edule HOM05D006908 ORTHO05D008662 4.0e-70 269.2 249 52.2
SalBow2G2262 Salvia bowleyana HOM05D006908 ORTHO05D008662 6.8e-70 268.5 246 52.4
Ah.01g005440 Amaranthus hybridus HOM05D006908 ORTHO05D008662 2.6e-69 266.5 252 54.4
ECA247G1365 Erigeron canadensis HOM05D006908 ORTHO05D008662 7.5e-69 265.0 247 53.8
EL10Ac9g22006 Beta vulgaris HOM05D006908 ORTHO05D008662 1.3e-68 264.2 245 53.9
Psat5g298720 Pisum sativum HOM05D006908 ORTHO05D008662 2.8e-68 263.1 246 51.2
SEGI_13943 Sequoiadendron giganteum HOM05D006908 ORTHO05D008662 3.7e-68 262.7 260 51.2
TWI75G1463 Tripterygium wilfordii HOM05D006908 ORTHO05D008662 3.7e-68 262.7 229 57.6
SHI10939 Sapria himalayana HOM05D006908 ORTHO05D008662 6.3e-68 261.9 247 51.8
Prupe.3G070300 Prunus persica HOM05D006908 ORTHO05D008662 4.1e-67 259.2 251 51.4
Sp5g35850 Schrenkiella parvula HOM05D006908 ORTHO05D008662 1.6e-66 257.3 249 51.0
MBI15_g13424_MAGBIO Magnolia biondii HOM05D006908 ORTHO05D008662 2.7e-66 256.5 244 55.7
Aqoxy7G01689 Aquilegia oxysepala HOM05D006908 ORTHO05D008662 1.7e-65 253.8 245 52.2
Peaxi162Scf00015g00453 Petunia axillaris HOM05D006908 ORTHO05D008662 5.0e-65 252.3 231 53.7
Gohir.D09G082700 Gossypium hirsutum HOM05D006908 ORTHO05D008662 3.3e-64 249.6 247 50.2
AUR62042927 Chenopodium quinoa HOM05D006908 ORTHO05D008662 7.2e-64 248.4 266 49.6
Carub.0002s2758 Capsella rubella HOM05D006908 ORTHO05D008662 9.5e-64 248.1 268 46.6
AT1G79915 Arabidopsis thaliana HOM05D006908 ORTHO05D008662 2.8e-63 246.5 245 49.8
Thhalv10018901m.g Eutrema salsugineum HOM05D006908 ORTHO05D008662 2.8e-63 246.5 245 51.0
BcaC08g47561 Brassica carinata HOM05D006908 ORTHO05D008662 4.7e-63 245.7 245 51.8
BcaC08g47592 Brassica carinata HOM05D002960 ORTHO05D003632 4.7e-63 245.7 245 51.0
Potri.001G181200 Populus trichocarpa HOM05D006908 ORTHO05D008662 4.7e-63 245.7 218 57.3
Nitab4.5_0000671g0150 Nicotiana tabacum HOM05D006908 ORTHO05D008662 3.0e-62 243.0 251 50.6
CARHR074570 Cardamine hirsuta HOM05D006908 ORTHO05D008662 6.8e-62 241.9 253 50.2
Mapoly0072s0004 Marchantia polymorpha HOM05D006908 ORTHO05D008662 1.2e-61 241.1 255 47.5
AUR62016450 Chenopodium quinoa HOM05D006908 ORTHO05D008662 1.5e-61 240.7 262 48.9
Aa31LG4G230 Aethionema arabicum HOM05D006908 ORTHO05D008662 3.4e-61 239.6 234 51.3
Cpa.g.sc0.185 Carica papaya HOM05D006908 ORTHO05D008662 5.7e-61 238.8 209 55.5
THA.LOC104812520 Tarenaya hassleriana HOM05D006908 ORTHO05D008662 9.8e-61 238.0 287 44.3
Pp3c16_8290 Physcomitrium patens HOM05D006908 ORTHO05D008662 1.1e-59 234.6 266 45.1
C06p54330 Brassica napus HOM05D002960 ORTHO05D003632 9.2e-59 231.5 271 46.1
BolC6t40444H Brassica oleracea HOM05D002960 ORTHO05D003632 9.2e-59 231.5 271 46.1
Gohir.A09G082800 Gossypium hirsutum HOM05D006908 ORTHO05D008662 9.2e-59 231.5 252 47.6
BraA07t32051Z Brassica rapa HOM05D006908 ORTHO05D008662 2.0e-58 230.3 248 49.2
unitig_52.g17450 Utricularia gibba HOM05D006908 ORTHO05D008662 7.3e-56 221.9 250 46.0
Lsat_1_v5_gn_1_35121 Lactuca sativa HOM05D006908 ORTHO05D008662 3.1e-54 216.5 218 51.8
CBR_g20274 Chara braunii HOM05D006908 ORTHO05D008662 6.8e-54 215.3 278 40.6
Hma1.2p1_0323F.1_g125130 Hydrangea macrophylla HOM05D006908 ORTHO05D008662 3.7e-52 209.5 244 43.9
AagrBONN_evm.TU.Sc2ySwM_344.5185 Anthoceros agrestis HOM05D006908 ORTHO05D008662 4.9e-52 209.1 248 44.8
CSS0029579 Camellia sinensis var. sinensis HOM05D006908 ORTHO05D008662 1.6e-50 204.1 173 51.4
Cfa002075 Carpinus fangiana HOM05D006908 ORTHO05D008662 4.6e-50 202.6 172 58.1
A07p45490 Brassica napus HOM05D006908 ORTHO05D008662 1.6e-47 194.1 297 40.7
AUR62033073 Chenopodium quinoa HOM05D006908 ORTHO05D008662 1.1e-40 171.4 204 47.5
FAN02G3381 Fragaria x ananassa HOM05D006908 ORTHO05D008662 1.3e-36 157.9 229 40.2
BcaC04g22058 Brassica carinata HOM05D006908 ORTHO05D008662 4.6e-34 149.4 252 38.1
C09p24020 Brassica napus HOM05D006908 ORTHO05D008662 5.8e-29 132.5 215 37.7
SMO347G0515 Selaginella moellendorffii HOM05D006908 ORTHO05D008662 2.1e-26 124.0 110 52.7
Cpa.g.sc41.12 Carica papaya HOM05D006908 ORTHO05D008662 4.6e-18 96.3 77 57.1
BolC9t55322H Brassica oleracea HOM05D006908 ORTHO05D008662 6.0e-18 95.9 85 55.3
AL2G41640 Arabidopsis lyrata HOM05D006908 ORTHO05D008662 1.3e-17 94.7 149 36.2
Actinidia32749 Actinidia chinensis HOM05D006908 ORTHO05D008662 8.1e-15 85.5 72 58.3
SGA_v2.0_scaffold37G14828 Striga asiatica HOM05D006908 ORTHO05D008662 1.1e-11 75.1 68 57.4
CANSAT54G1478 Cannabis sativa HOM05D002956 ORTHO05D008031 2.1e-07 60.8 171 26.3
AUR62007566 Chenopodium quinoa HOM05D005677 ORTHO05D006966 2.1e-07 60.8 169 30.8
Gohir.A07G121300 Gossypium hirsutum HOM05D002956 ORTHO05D008031 6.2e-07 59.3 164 26.2
Pp3c3_3430 Physcomitrium patens HOM05D002956 ORTHO05D008031 1.4e-06 58.2 151 31.1
AUR62004051 Chenopodium quinoa HOM05D005677 ORTHO05D006966 1.8e-06 57.8 169 29.6
FvH4_3g28160 Fragaria vesca HOM05D002956 ORTHO05D008031 1.8e-06 57.8 152 29.6
Sp5g28250 Schrenkiella parvula HOM05D001602 ORTHO05D001470 1.8e-06 57.8 191 26.7
CBR_g3620 Chara braunii HOM05D005677 ORTHO05D006966 2.4e-06 57.4 123 31.7
Thhalv10018937m.g Eutrema salsugineum HOM05D001602 ORTHO05D001470 4.0e-06 56.6 191 26.7
DCAR_005441 Daucus carota HOM05D001602 ORTHO05D001470 5.3e-06 56.2 184 28.3
Gohir.D07G125600 Gossypium hirsutum HOM05D002956 ORTHO05D008031 5.3e-06 56.2 160 25.6
Mapoly0115s0038 Marchantia polymorpha HOM05D001602 ORTHO05D001470 5.3e-06 56.2 184 26.6
Phvul.005G020600 Phaseolus vulgaris HOM05D002956 ORTHO05D008031 5.3e-06 56.2 165 24.2
PSO210G0829 Papaver somniferum HOM05D002553 ORTHO05D002767 6.9e-06 55.8 200 29.0
PSO832G1112 Papaver somniferum HOM05D002553 ORTHO05D002767 6.9e-06 55.8 200 29.0
Ca_25281_v3 Cicer arietinum L. HOM05D001602 ORTHO05D001470 9.0e-06 55.5 209 27.8
Ciclev10033731m.g Citrus clementina HOM05D001602 ORTHO05D001470 9.0e-06 55.5 185 30.3


User provided reference genes

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