Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0602G122 Amborella trichopoda HOM05D004576 ORTHO05D005321 2.5e-30 134.8 69 100.0
ATR0763G025 Amborella trichopoda HOM05D004576 ORTHO05D005321 9.9e-27 122.9 68 91.2
DCAR_020325 Daucus carota HOM05D004576 ORTHO05D005321 2.6e-19 98.2 68 67.6
MBI06_g10867_MAGBIO Magnolia biondii HOM05D004576 ORTHO05D005321 4.4e-19 97.4 68 69.1
Psat5g076560 Pisum sativum HOM05D004576 ORTHO05D005321 4.4e-19 97.4 68 72.1
Dinv29270 Davidia involucrata HOM05D004576 ORTHO05D005321 7.6e-19 96.7 68 69.1
Manes.10G051900 Manihot esculenta HOM05D004576 ORTHO05D005321 1.3e-18 95.9 68 67.6
Cpa.g.sc3.95 Carica papaya HOM05D004576 ORTHO05D005321 1.7e-18 95.5 68 69.1
Medtr3g091640 Medicago truncatula HOM05D004576 ORTHO05D005321 1.7e-18 95.5 68 67.6
Ah.07g205540 Amaranthus hybridus HOM05D004576 ORTHO05D005321 2.9e-18 94.7 68 66.2
Cc02_g01450 Coffea canephora HOM05D004576 ORTHO05D005321 2.9e-18 94.7 68 67.6
Manes.07G095000 Manihot esculenta HOM05D004576 ORTHO05D005321 2.9e-18 94.7 68 66.2
Cfa016237 Carpinus fangiana HOM05D004576 ORTHO05D005321 3.8e-18 94.4 68 67.6
Dinv35342 Davidia involucrata HOM05D004576 ORTHO05D005321 3.8e-18 94.4 68 66.2
Ca_16714_v3 Cicer arietinum L. HOM05D004576 ORTHO05D005321 4.9e-18 94.0 68 67.6
COL.COLO4_16771 Corchorus olitorius HOM05D004576 ORTHO05D005321 6.4e-18 93.6 68 69.1
Lsat_1_v5_gn_2_136141 Lactuca sativa HOM05D004576 ORTHO05D005321 8.4e-18 93.2 63 71.4
Lsat_1_v5_gn_3_139541 Lactuca sativa HOM05D004576 ORTHO05D005321 1.1e-17 92.8 64 68.8
Lalb_Chr11g0066931 Lupinus albus HOM05D004576 ORTHO05D005321 1.1e-17 92.8 68 64.7
Rhsim09G0206100 Rhododendron simsii HOM05D004576 ORTHO05D005321 1.1e-17 92.8 68 63.2
vmacro10126 Vaccinium macrocarpon HOM05D004576 ORTHO05D005321 1.1e-17 92.8 68 66.2
CSS0008628 Camellia sinensis var. sinensis HOM05D004576 ORTHO05D005321 1.9e-17 92.0 68 66.2
GSVIVG01038559001 Vitis vinifera HOM05D004576 ORTHO05D005321 1.9e-17 92.0 68 66.2
Gohir.D04G001200 Gossypium hirsutum HOM05D004576 ORTHO05D005321 2.4e-17 91.7 68 67.6
Gorai.012G002200 Gossypium raimondii HOM05D004576 ORTHO05D005321 2.4e-17 91.7 68 67.6
EL10Ac3g05272 Beta vulgaris HOM05D004576 ORTHO05D005321 3.2e-17 91.3 68 63.2
Gohir.A05G415000 Gossypium hirsutum HOM05D004576 ORTHO05D005321 5.4e-17 90.5 68 66.2
Thecc.03G200200 Theobroma cacao HOM05D004576 ORTHO05D005321 5.4e-17 90.5 68 67.6
CSS0016084 Camellia sinensis var. sinensis HOM05D004576 ORTHO05D005321 9.3e-17 89.7 68 63.2
Haze_00204 Corylus avellana HOM05D004576 ORTHO05D005321 9.3e-17 89.7 68 64.7
Actinidia06144 Actinidia chinensis HOM05D004576 ORTHO05D005321 1.2e-16 89.4 63 66.7
AUR62019411 Chenopodium quinoa HOM05D004576 ORTHO05D005321 1.2e-16 89.4 68 60.3
FAN06G0548 Fragaria x ananassa HOM05D004576 ORTHO05D005321 1.2e-16 89.4 70 65.7
HanXRQChr07g0206441 Helianthus annuus HOM05D004576 ORTHO05D005321 1.2e-16 89.4 68 61.8
FAN06G1560 Fragaria x ananassa HOM05D004576 ORTHO05D005321 1.6e-16 89.0 70 67.1
RcHm_v2.0_Chr1g0380451 Rosa chinensis HOM05D004576 ORTHO05D005321 1.6e-16 89.0 70 67.1
FvH4_7g31380 Fragaria vesca HOM05D004576 ORTHO05D005321 2.1e-16 88.6 70 65.7
FAN03G3343 Fragaria x ananassa HOM05D004576 ORTHO05D005321 2.1e-16 88.6 70 65.7
Nitab4.5_0003555g0040 Nicotiana tabacum HOM05D004576 ORTHO05D005321 2.1e-16 88.6 68 61.8
Hund11655 Selenicereus undatus HOM05D004576 ORTHO05D005321 2.1e-16 88.6 68 57.4
AUR62006083 Chenopodium quinoa HOM05D004576 ORTHO05D005321 2.7e-16 88.2 68 58.8
Sc25g0000910 Simmondsia chinensis HOM05D004576 ORTHO05D005321 2.7e-16 88.2 68 58.8
Duzib068G0175 Durio zibethinus HOM05D004576 ORTHO05D005321 3.5e-16 87.8 63 69.8
Gohir.D12G250200 Gossypium hirsutum HOM05D004576 ORTHO05D005321 3.5e-16 87.8 68 64.7
Gorai.008G268300 Gossypium raimondii HOM05D004576 ORTHO05D005321 3.5e-16 87.8 68 64.7
Hma1.2p1_0404F.1_g145290 Hydrangea macrophylla HOM05D004576 ORTHO05D005321 3.5e-16 87.8 67 65.7
Hma1.2p1_1587F.1_g292290 Hydrangea macrophylla HOM05D004576 ORTHO05D005321 3.5e-16 87.8 67 65.7
arahy.Tifrunner.gnm1.ann1.EHU7FT Arachis hypogaea HOM05D004576 ORTHO05D005321 6.0e-16 87.0 69 60.9
arahy.Tifrunner.gnm1.ann1.S03LBS Arachis hypogaea HOM05D004576 ORTHO05D005321 6.0e-16 87.0 69 60.9
CSS0039200 Camellia sinensis var. sinensis HOM05D004576 ORTHO05D005321 6.0e-16 87.0 68 64.7
Oeu041059.3 Olea europaea HOM05D004576 ORTHO05D005321 6.0e-16 87.0 68 60.3
CAN.G575.13 Capsicum annuum HOM05D004576 ORTHO05D005321 7.8e-16 86.7 68 61.8
FAN01G2495 Fragaria x ananassa HOM05D004576 ORTHO05D005321 7.8e-16 86.7 70 64.3
Hma1.2p1_1507F.1_g287630 Hydrangea macrophylla HOM05D004576 ORTHO05D005321 1.0e-15 86.3 68 60.3
Prupe.2G309200 Prunus persica HOM05D004576 ORTHO05D005321 1.0e-15 86.3 69 63.8
CDE02G4477 Ceratophyllum demersum HOM05D004576 ORTHO05D005321 1.7e-15 85.5 68 60.3
Ciclev10020388m.g Citrus clementina HOM05D004576 ORTHO05D005321 1.7e-15 85.5 68 57.4
MD01G1217800 Malus domestica HOM05D004576 ORTHO05D005321 1.7e-15 85.5 70 62.9
MD07G1287100 Malus domestica HOM05D004576 ORTHO05D005321 1.7e-15 85.5 69 63.8
MD07G1287400 Malus domestica HOM05D004576 ORTHO05D005321 1.7e-15 85.5 69 63.8
PSO063G4456 Papaver somniferum HOM05D004576 ORTHO05D005321 3.0e-15 84.7 68 57.4
Glyma.04G234900 Glycine max HOM05D004576 ORTHO05D005321 5.1e-15 84.0 63 63.5
Nn1g00276 Nelumbo nucifera HOM05D004576 ORTHO05D005321 5.1e-15 84.0 68 57.4
Potri.012G016500 Populus trichocarpa HOM05D004576 ORTHO05D005321 5.1e-15 84.0 69 63.8
PGR042G3016 Punica granatum HOM05D004576 ORTHO05D005321 6.6e-15 83.6 63 61.9
SGA_v2.0_scaffold192G40533 Striga asiatica HOM05D004576 ORTHO05D005321 6.6e-15 83.6 62 64.5
PSO170G4165 Papaver somniferum HOM05D004576 ORTHO05D005321 1.1e-14 82.8 68 55.9
PSO170G5996 Papaver somniferum HOM05D004576 ORTHO05D005321 1.1e-14 82.8 68 55.9
CiPaw.06G045600 Carya illinoinensis HOM05D004576 ORTHO05D005321 1.5e-14 82.4 63 60.3
QL09p008710 Quercus lobata HOM05D004576 ORTHO05D005321 1.9e-14 82.0 66 60.6
CARHR265990 Cardamine hirsuta HOM05D004576 ORTHO05D005321 2.5e-14 81.6 68 61.8
Solyc01g006110.3 Solanum lycopersicum HOM05D004576 ORTHO05D005321 2.5e-14 81.6 68 55.9
Sopen01g002110 Solanum pennellii HOM05D004576 ORTHO05D005321 2.5e-14 81.6 68 55.9
CANSAT21G1766 Cannabis sativa HOM05D004576 ORTHO05D005321 3.3e-14 81.3 69 59.4
Thhalv10013705m.g Eutrema salsugineum HOM05D004576 ORTHO05D005321 3.3e-14 81.3 68 58.8
Peaxi162Scf00441g00115 Petunia axillaris HOM05D004576 ORTHO05D005321 3.3e-14 81.3 68 55.9
SEGI_39808 Sequoiadendron giganteum HOM05D004576 ORTHO05D005321 3.3e-14 81.3 68 57.4
HPP92_010727 Vanilla planifolia HOM05D004576 ORTHO05D005321 4.3e-14 80.9 64 59.4
Migut.F00204 Erythranthe guttata HOM05D004576 ORTHO05D005321 5.6e-14 80.5 68 57.4
Sed0009575 Sechium edule HOM05D004576 ORTHO05D005321 5.6e-14 80.5 63 57.1
Aqoxy7G00528 Aquilegia oxysepala HOM05D004576 ORTHO05D005321 7.3e-14 80.1 68 51.5
VMungo1309G0981 Vigna mungo HOM05D005525 ORTHO05D005321 7.3e-14 80.1 63 58.7
CsaV3_5G037660 Cucumis sativus L. HOM05D004576 ORTHO05D005321 1.3e-13 79.3 61 59.0
Mapoly0036s0077 Marchantia polymorpha HOM05D004576 ORTHO05D005321 1.3e-13 79.3 68 54.4
Sed0014456 Sechium edule HOM05D004576 ORTHO05D005321 1.3e-13 79.3 63 58.7
SGA_v2.0_scaffold44G16809 Striga asiatica HOM05D004576 ORTHO05D005321 1.3e-13 79.3 61 62.3
Atru.chr12.2224 Acer truncatum HOM05D004576 ORTHO05D005321 1.6e-13 79.0 63 57.1
Aa31LG9G16760 Aethionema arabicum HOM05D004576 ORTHO05D005321 1.6e-13 79.0 63 60.3
BcaC04g20518 Brassica carinata HOM05D004576 ORTHO05D005321 1.6e-13 79.0 68 57.4
C09p42710 Brassica napus HOM05D004576 ORTHO05D005321 1.6e-13 79.0 68 57.4
BolC9t57147H Brassica oleracea HOM05D004576 ORTHO05D005321 1.6e-13 79.0 68 57.4
TAR633G0881 Trochodendron aralioides HOM05D004576 ORTHO05D005321 1.6e-13 79.0 63 60.3
MSTRG.27022 Avicennia marina HOM05D004576 ORTHO05D005321 2.1e-13 78.6 63 60.3
MELO3C021489.2 Cucumis melo HOM05D004576 ORTHO05D005321 2.1e-13 78.6 61 57.4
Phvul.009G051900 Phaseolus vulgaris HOM05D004576 ORTHO05D005321 2.1e-13 78.6 63 58.7
PGSC0003DMG400032187 Solanum tuberosum HOM05D004576 ORTHO05D005321 2.1e-13 78.6 68 54.4
Sp6g15160 Schrenkiella parvula HOM05D004576 ORTHO05D005321 2.8e-13 78.2 63 60.3
Eucgr.A01454 Eucalyptus grandis HOM05D004576 ORTHO05D005321 3.6e-13 77.8 68 54.4
Glyma.06G129650 Glycine max HOM05D005525 ORTHO05D006341 3.6e-13 77.8 65 63.1
Potri.015G012200 Populus trichocarpa HOM05D004576 ORTHO05D005321 3.6e-13 77.8 64 64.1
AL4G21090 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 4.8e-13 77.4 68 55.9
AL8G27600 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 4.8e-13 77.4 68 55.9
Lj4g0015379 Lotus japonicus HOM05D004576 ORTHO05D005321 4.8e-13 77.4 67 56.7
Carub.0008s1320 Capsella rubella HOM05D004576 ORTHO05D005321 6.2e-13 77.0 68 55.9
SalBow4G0465 Salvia bowleyana HOM05D004576 ORTHO05D005321 6.2e-13 77.0 68 52.9
TAR629G2734 Trochodendron aralioides HOM05D004576 ORTHO05D005321 6.2e-13 77.0 63 60.3
A10p10480 Brassica napus HOM05D004576 ORTHO05D005321 8.1e-13 76.6 68 54.4
BraA10t43131Z Brassica rapa HOM05D004576 ORTHO05D005321 8.1e-13 76.6 68 54.4
CAN.G140.19 Capsicum annuum HOM05D004576 ORTHO05D005321 1.1e-12 76.3 68 54.4
AL4G21010 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 1.4e-12 75.9 68 55.9
AL8G27540 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 1.4e-12 75.9 68 55.9
TPR.G19381 Trifolium pratense HOM05D000003 ORTHO05D000004 2.4e-12 75.1 54 68.5
BcaC03g14466 Brassica carinata HOM05D004576 ORTHO05D005321 3.1e-12 74.7 63 58.7
TPR.G18754 Trifolium pratense HOM05D004576 ORTHO05D005321 3.1e-12 74.7 55 67.3
AT5G53000 Arabidopsis thaliana HOM05D004576 ORTHO05D005321 4.0e-12 74.3 68 54.4
ClCG09G018570 Citrullus lanatus HOM05D004576 ORTHO05D005321 4.0e-12 74.3 61 55.7
Gohir.A12G249400 Gossypium hirsutum HOM05D004576 ORTHO05D005321 4.0e-12 74.3 57 66.7
ECA238G3082 Erigeron canadensis HOM05D004576 ORTHO05D005321 5.3e-12 73.9 67 58.2
THA.LOC104799972 Tarenaya hassleriana HOM05D004576 ORTHO05D005321 5.3e-12 73.9 63 57.1
BolC2t08029H Brassica oleracea HOM05D004576 ORTHO05D005321 6.9e-12 73.6 63 57.1
unitig_748.g7294 Utricularia gibba HOM05D004576 ORTHO05D005321 1.5e-11 72.4 68 47.1
MBI07_g24780_MAGBIO Magnolia biondii HOM05D004576 ORTHO05D005321 2.0e-11 72.0 68 48.5
MBI07_g45568_MAGBIO Magnolia biondii HOM05D004576 ORTHO05D005321 2.0e-11 72.0 68 48.5
TWI39G0751 Tripterygium wilfordii HOM05D004576 ORTHO05D005321 3.4e-11 71.2 70 54.3
Os12g0137500 Oryza sativa ssp. japonica HOM05D004576 ORTHO05D005321 3.8e-10 67.8 66 45.5
SMO118G0543 Selaginella moellendorffii HOM05D004576 ORTHO05D005321 4.9e-10 67.4 68 50.0
Oeu023658.2 Olea europaea HOM05D004576 ORTHO05D005321 8.4e-10 66.6 55 56.4
Lj1g0016726 Lotus japonicus HOM05D004576 ORTHO05D005321 1.1e-09 66.2 90 41.1
Pp3c27_2200 Physcomitrium patens HOM05D004576 ORTHO05D005321 3.2e-09 64.7 68 47.1
Pp3c27_2230 Physcomitrium patens HOM05D004576 ORTHO05D005321 3.2e-09 64.7 68 47.1
SHI02368 Sapria himalayana HOM05D004576 ORTHO05D005321 5.4e-09 63.9 61 54.1
Zm00001eb093250 Zea mays HOM05D004576 ORTHO05D005321 5.4e-09 63.9 66 42.4
Zm00001eb196410 Zea mays HOM05D004576 ORTHO05D005321 2.7e-08 61.6 61 42.6
Sabra15G0009800 Salix brachista HOM05D004576 ORTHO05D005321 1.0e-07 59.7 34 85.3
Nitab4.5_0005477g0060 Nicotiana tabacum HOM05D004576 ORTHO05D005321 3.9e-07 57.8 68 42.6
AagrBONN_evm.TU.Sc2ySwM_368.1428 Anthoceros agrestis HOM05D004576 ORTHO05D005321 5.6e-06 53.9 62 45.2


User provided reference genes

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