Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0602G109 Amborella trichopoda HOM05D004310 ORTHO05D005403 2.7e-36 154.8 80 100.0
ATR0213G003 Amborella trichopoda HOM05D004310 ORTHO05D005403 3.7e-17 91.3 51 92.2
Cfa003806 Carpinus fangiana HOM05D004310 ORTHO05D005403 1.6e-15 85.9 48 89.6
Haze_15649 Corylus avellana HOM05D004310 ORTHO05D005403 1.6e-15 85.9 48 89.6
Zm00001eb156640 Zea mays HOM05D004310 ORTHO05D005403 1.6e-15 85.9 47 89.4
Zm00001eb360440 Zea mays HOM05D004310 ORTHO05D005403 1.6e-15 85.9 47 89.4
AT4G01000 Arabidopsis thaliana HOM05D004310 ORTHO05D005403 2.0e-15 85.5 53 83.0
Sc01g0002750 Simmondsia chinensis HOM05D004310 ORTHO05D005403 2.6e-15 85.1 48 87.5
ClCG06G001190 Citrullus lanatus HOM05D004310 ORTHO05D005403 3.5e-15 84.7 48 87.5
Cc02_g39270 Coffea canephora HOM05D004310 ORTHO05D005403 3.5e-15 84.7 48 87.5
COL.COLO4_06292 Corchorus olitorius HOM05D004310 ORTHO05D005403 3.5e-15 84.7 48 89.6
MELO3C022416.2 Cucumis melo HOM05D004310 ORTHO05D005403 3.5e-15 84.7 48 87.5
CsaV3_6G007120 Cucumis sativus L. HOM05D004310 ORTHO05D005403 3.5e-15 84.7 48 87.5
Thhalv10028668m.g Eutrema salsugineum HOM05D004310 ORTHO05D005403 3.5e-15 84.7 48 85.4
Gohir.D08G146400 Gossypium hirsutum HOM05D004310 ORTHO05D005403 3.5e-15 84.7 48 87.5
Lj7A501T50 Lonicera japonica HOM05D004310 ORTHO05D005403 3.5e-15 84.7 48 85.4
Atru.chr5.660 Acer truncatum HOM05D004310 ORTHO05D005403 4.5e-15 84.3 48 85.4
AL6G52400 Arabidopsis lyrata HOM05D004310 ORTHO05D005403 4.5e-15 84.3 48 85.4
CiPaw.02G040300 Carya illinoinensis HOM05D004310 ORTHO05D005403 4.5e-15 84.3 48 85.4
AUR62023468 Chenopodium quinoa HOM05D004310 ORTHO05D005403 4.5e-15 84.3 48 87.5
CSS0029608 Camellia sinensis var. sinensis HOM05D004310 ORTHO05D005403 5.9e-15 84.0 48 85.4
MBI06_g08458_MAGBIO Magnolia biondii HOM05D004310 ORTHO05D005403 5.9e-15 84.0 49 83.7
Phvul.006G112400 Phaseolus vulgaris HOM05D004310 ORTHO05D005403 5.9e-15 84.0 48 85.4
VMungo0540G1382 Vigna mungo HOM05D004310 ORTHO05D005403 5.9e-15 84.0 48 85.4
Duzib133G1258 Durio zibethinus HOM05D004310 ORTHO05D005403 7.7e-15 83.6 48 87.5
Gohir.A08G125500 Gossypium hirsutum HOM05D004310 ORTHO05D005403 7.7e-15 83.6 48 85.4
Gohir.A12G111933 Gossypium hirsutum HOM05D004310 ORTHO05D005403 7.7e-15 83.6 48 87.5
Gorai.008G124900 Gossypium raimondii HOM05D004310 ORTHO05D005403 7.7e-15 83.6 48 87.5
Lj1g0027458 Lotus japonicus HOM05D004310 ORTHO05D005403 7.7e-15 83.6 48 85.4
Manes.05G023500 Manihot esculenta HOM05D004310 ORTHO05D005403 7.7e-15 83.6 48 85.4
Sp6g01150 Schrenkiella parvula HOM05D004310 ORTHO05D005403 7.7e-15 83.6 48 83.3
Thecc.01G343300 Theobroma cacao HOM05D004310 ORTHO05D005403 7.7e-15 83.6 48 87.5
EL10Ac1g00277 Beta vulgaris HOM05D004310 ORTHO05D005403 1.0e-14 83.2 48 85.4
Carub.0006s3602 Capsella rubella HOM05D004310 ORTHO05D005403 1.0e-14 83.2 48 83.3
Ciclev10020037m.g Citrus clementina HOM05D004310 ORTHO05D005403 1.0e-14 83.2 48 85.4
Duzib138G0762 Durio zibethinus HOM05D004310 ORTHO05D005403 1.0e-14 83.2 48 85.4
Oeu008696.1 Olea europaea HOM05D004310 ORTHO05D005403 1.0e-14 83.2 48 87.5
SalBow3G2754 Salvia bowleyana HOM05D004310 ORTHO05D005403 1.0e-14 83.2 48 87.5
TPR.G4733 Trifolium pratense HOM05D004310 ORTHO05D005403 1.0e-14 83.2 48 85.4
Glyma.03G257300 Glycine max HOM05D004310 ORTHO05D005403 1.3e-14 82.8 48 85.4
Os01g0681600 Oryza sativa ssp. japonica HOM05D004310 ORTHO05D005403 1.3e-14 82.8 47 87.2
arahy.Tifrunner.gnm1.ann1.BIP3BJ Arachis hypogaea HOM05D004310 ORTHO05D005403 1.7e-14 82.4 48 83.3
BcaC01g06834 Brassica carinata HOM05D004310 ORTHO05D005403 1.7e-14 82.4 48 83.3
BcaC04g24118 Brassica carinata HOM05D004310 ORTHO05D005403 1.7e-14 82.4 48 81.2
C03p38780 Brassica napus HOM05D004310 ORTHO05D005403 1.7e-14 82.4 48 83.3
C09p00900 Brassica napus HOM05D004310 ORTHO05D005403 1.7e-14 82.4 48 81.2
BolC3t16153H Brassica oleracea HOM05D004310 ORTHO05D005403 1.7e-14 82.4 48 83.3
BolC9t53025H Brassica oleracea HOM05D004310 ORTHO05D005403 1.7e-14 82.4 48 81.2
Psat3g002680 Pisum sativum HOM05D004310 ORTHO05D005403 1.7e-14 82.4 47 85.1
Potri.002G170200 Populus trichocarpa HOM05D004310 ORTHO05D005403 1.7e-14 82.4 48 83.3
Potri.014G098100 Populus trichocarpa HOM05D004310 ORTHO05D005403 1.7e-14 82.4 48 83.3
Hund27201 Selenicereus undatus HOM05D004310 ORTHO05D005403 1.7e-14 82.4 48 83.3
CARHR249350 Cardamine hirsuta HOM05D004310 ORTHO05D005403 2.2e-14 82.0 48 83.3
Lalb_Chr04g0261561 Lupinus albus HOM05D004310 ORTHO05D005403 2.2e-14 82.0 48 83.3
PGR042G3601 Punica granatum HOM05D004310 ORTHO05D005403 2.2e-14 82.0 48 83.3
QL04p061163 Quercus lobata HOM05D004310 ORTHO05D005403 2.2e-14 82.0 48 83.3
Aqoxy7G00105 Aquilegia oxysepala HOM05D004310 ORTHO05D005403 2.9e-14 81.6 48 83.3
BcaB01g02305 Brassica carinata HOM05D004310 ORTHO05D005403 2.9e-14 81.6 48 81.2
A03p31750 Brassica napus HOM05D004310 ORTHO05D005403 2.9e-14 81.6 48 81.2
BraA03t12352Z Brassica rapa HOM05D004310 ORTHO05D005403 2.9e-14 81.6 48 81.2
BraA09t35754Z Brassica rapa HOM05D004310 ORTHO05D005403 2.9e-14 81.6 48 79.2
CANSAT56G1285 Cannabis sativa HOM05D004310 ORTHO05D005403 2.9e-14 81.6 47 85.1
Gorai.004G152000 Gossypium raimondii HOM05D004310 ORTHO05D005403 2.9e-14 81.6 48 85.4
Lalb_Chr18g0044401 Lupinus albus HOM05D004310 ORTHO05D005403 2.9e-14 81.6 48 85.4
Nn1g01876 Nelumbo nucifera HOM05D004310 ORTHO05D005403 2.9e-14 81.6 48 83.3
GSVIVG01027093001 Vitis vinifera HOM05D004310 ORTHO05D005403 2.9e-14 81.6 48 85.4
C09p72920 Brassica napus HOM05D007779 ORTHO05D009863 3.8e-14 81.3 48 83.3
BolC9t60029H Brassica oleracea HOM05D004310 ORTHO05D040128 3.8e-14 81.3 48 83.3
HanXRQChr06g0170681 Helianthus annuus HOM05D004310 ORTHO05D005403 3.8e-14 81.3 48 81.2
MBI13_g41012_MAGBIO Magnolia biondii HOM05D004310 ORTHO05D005403 3.8e-14 81.3 49 79.6
Oeu004945.1 Olea europaea HOM05D004310 ORTHO05D005403 3.8e-14 81.3 48 85.4
PSO339G6050 Papaver somniferum HOM05D004310 ORTHO05D005403 3.8e-14 81.3 48 83.3
PSO384G0413 Papaver somniferum HOM05D004310 ORTHO05D005403 3.8e-14 81.3 48 83.3
Sabra02G0142100 Salix brachista HOM05D004310 ORTHO05D005403 3.8e-14 81.3 48 81.2
PGSC0003DMG400000104 Solanum tuberosum HOM05D004310 ORTHO05D005403 3.8e-14 81.3 48 83.3
arahy.Tifrunner.gnm1.ann1.Z66XJ9 Arachis hypogaea HOM05D004310 ORTHO05D005403 5.0e-14 80.9 48 81.2
A09p00270 Brassica napus HOM05D004310 ORTHO05D005403 5.0e-14 80.9 48 79.2
AUR62004485 Chenopodium quinoa HOM05D004310 ORTHO05D005403 5.0e-14 80.9 48 83.3
Ca_09504_v3 Cicer arietinum L. HOM05D004310 ORTHO05D005403 5.0e-14 80.9 48 81.2
ECA236G2788 Erigeron canadensis HOM05D004310 ORTHO05D005403 5.0e-14 80.9 48 83.3
Eucgr.D02370 Eucalyptus grandis HOM05D004310 ORTHO05D005403 5.0e-14 80.9 47 83.0
Glyma.19G255600 Glycine max HOM05D004310 ORTHO05D005403 5.0e-14 80.9 48 83.3
AT3G06455 Arabidopsis thaliana HOM05D004310 ORTHO05D005403 6.5e-14 80.5 48 83.3
Gohir.D12G115400 Gossypium hirsutum HOM05D004310 ORTHO05D005403 6.5e-14 80.5 48 85.4
Prupe.2G187300 Prunus persica HOM05D004310 ORTHO05D005403 6.5e-14 80.5 48 77.1
RcHm_v2.0_Chr1g0359351 Rosa chinensis HOM05D004310 ORTHO05D005403 6.5e-14 80.5 48 79.2
Aa31LG5G960 Aethionema arabicum HOM05D004310 ORTHO05D005403 8.5e-14 80.1 48 81.2
DCAR_025250 Daucus carota HOM05D004310 ORTHO05D005403 8.5e-14 80.1 48 83.3
Peaxi162Scf00786g00321 Petunia axillaris HOM05D004310 ORTHO05D005403 8.5e-14 80.1 48 83.3
Rhsim07G0004600 Rhododendron simsii HOM05D004310 ORTHO05D005403 8.5e-14 80.1 47 83.0
Solyc01g095790.4 Solanum lycopersicum HOM05D004310 ORTHO05D005403 8.5e-14 80.1 48 81.2
Sopen01g039540 Solanum pennellii HOM05D004310 ORTHO05D005403 8.5e-14 80.1 48 81.2
SGA_v2.0_scaffold43G16367 Striga asiatica HOM05D004310 ORTHO05D005403 8.5e-14 80.1 48 81.2
TWI14G0601 Tripterygium wilfordii HOM05D004310 ORTHO05D005403 8.5e-14 80.1 47 80.9
MSTRG.20902 Avicennia marina HOM05D004310 ORTHO05D005403 1.1e-13 79.7 48 81.2
C09p73290 Brassica napus HOM05D004310 ORTHO05D040128 1.1e-13 79.7 48 79.2
Dinv35111 Davidia involucrata HOM05D004310 ORTHO05D005403 1.1e-13 79.7 53 77.4
Nitab4.5_0004999g0060 Nicotiana tabacum HOM05D004310 ORTHO05D005403 1.1e-13 79.7 47 83.0
TAR375G0608 Trochodendron aralioides HOM05D004310 ORTHO05D005403 1.1e-13 79.7 48 81.2
Lsat_1_v5_gn_7_1281 Lactuca sativa HOM05D004310 ORTHO05D005403 1.5e-13 79.3 49 77.6
FvH4_7g16340 Fragaria vesca HOM05D004310 ORTHO05D005403 1.9e-13 79.0 48 79.2
FAN01G1347 Fragaria x ananassa HOM05D004310 ORTHO05D005403 1.9e-13 79.0 48 79.2
FAN06G2059 Fragaria x ananassa HOM05D004310 ORTHO05D005403 1.9e-13 79.0 48 79.2
FAN06G2445 Fragaria x ananassa HOM05D004310 ORTHO05D005403 1.9e-13 79.0 48 79.2
FAN10G0275 Fragaria x ananassa HOM05D004310 ORTHO05D005403 1.9e-13 79.0 48 79.2
FAN10G2670 Fragaria x ananassa HOM05D004310 ORTHO05D005403 1.9e-13 79.0 48 79.2
Medtr7g117320 Medicago truncatula HOM05D004310 ORTHO05D005403 1.9e-13 79.0 48 83.3
Sabra14G0071900 Salix brachista HOM05D004310 ORTHO05D005403 1.9e-13 79.0 48 79.2
TWI59G1199 Tripterygium wilfordii HOM05D004310 ORTHO05D005403 1.9e-13 79.0 47 80.9
CAN.G986.11 Capsicum annuum HOM05D004310 ORTHO05D005403 2.5e-13 78.6 48 81.2
vmacro13157 Vaccinium macrocarpon HOM05D004310 ORTHO05D005403 2.5e-13 78.6 46 82.6
MSTRG.17338 Avicennia marina HOM05D004310 ORTHO05D005403 3.2e-13 78.2 48 83.3
Migut.O00903 Erythranthe guttata HOM05D004310 ORTHO05D005403 3.2e-13 78.2 48 81.2
MD01G1080000 Malus domestica HOM05D004310 ORTHO05D005403 3.2e-13 78.2 48 77.1
FAN03G3179 Fragaria x ananassa HOM05D004310 ORTHO05D005403 4.2e-13 77.8 48 77.1
Actinidia10134 Actinidia chinensis HOM05D004310 ORTHO05D005403 5.5e-13 77.4 47 78.7
Actinidia20238 Actinidia chinensis HOM05D004310 ORTHO05D005403 5.5e-13 77.4 47 78.7
CDE10G1323 Ceratophyllum demersum HOM05D004310 ORTHO05D005403 7.2e-13 77.0 47 78.7
Migut.N01550 Erythranthe guttata HOM05D004310 ORTHO05D005403 7.2e-13 77.0 48 79.2
Nitab4.5_0000838g0210 Nicotiana tabacum HOM05D004310 ORTHO05D005403 9.4e-13 76.6 47 78.7
MD07G1148800 Malus domestica HOM05D004310 ORTHO05D005403 1.2e-12 76.3 48 75.0
THA.LOC104801375 Tarenaya hassleriana HOM05D004310 ORTHO05D005403 1.2e-12 76.3 49 75.5
THA.LOC104817053 Tarenaya hassleriana HOM05D004310 ORTHO05D005403 1.6e-12 75.9 47 76.6
CDE10G0591 Ceratophyllum demersum HOM05D004310 ORTHO05D005403 2.7e-12 75.1 46 78.3
Aa31LG1G10680 Aethionema arabicum HOM05D004310 ORTHO05D005403 3.6e-12 74.7 49 71.4
Cpa.g.sc96.7 Carica papaya HOM05D004310 ORTHO05D005403 3.6e-12 74.7 48 72.9
SEGI_04150 Sequoiadendron giganteum HOM05D004310 ORTHO05D005403 3.6e-12 74.7 50 76.0
SEGI_12000 Sequoiadendron giganteum HOM05D004310 ORTHO05D005403 3.6e-12 74.7 50 76.0
Sp1g00950 Schrenkiella parvula HOM05D004310 ORTHO05D005403 1.8e-11 72.4 49 69.4
AL2G16720 Arabidopsis lyrata HOM05D004310 ORTHO05D005403 2.3e-11 72.0 48 75.0
CBR_g29554 Chara braunii HOM05D004310 ORTHO05D005403 6.7e-11 70.5 47 76.6
PSO724G1042 Papaver somniferum HOM05D004310 ORTHO05D005403 8.8e-11 70.1 47 76.6
BraA10t45076Z Brassica rapa HOM05D001260 ORTHO05D002424 1.1e-10 69.7 51 62.7
SMO270G0076 Selaginella moellendorffii HOM05D004310 ORTHO05D005403 1.5e-10 69.3 48 70.8
BcaC03g13029 Brassica carinata HOM05D004310 ORTHO05D009268 7.5e-10 67.0 42 76.2
C02p00800 Brassica napus HOM05D004310 ORTHO05D009268 7.5e-10 67.0 42 76.2
BolC2t06078H Brassica oleracea HOM05D004310 ORTHO05D009268 7.5e-10 67.0 42 76.2
RcHm_v2.0_Chr1g0344721 Rosa chinensis HOM05D004310 ORTHO05D005403 1.1e-08 63.2 46 67.4
Ciclev10004777m.g Citrus clementina HOM05D003934 ORTHO05D005108 5.3e-08 60.8 48 68.8
HPP92_021541 Vanilla planifolia HOM05D003934 ORTHO05D005108 1.3e-06 56.2 48 64.6
HPP92_021551 Vanilla planifolia HOM05D003934 ORTHO05D005108 1.3e-06 56.2 48 64.6
CAN.G108.66 Capsicum annuum HOM05D003934 ORTHO05D005108 1.7e-06 55.8 48 62.5
Zm00001eb156600 Zea mays HOM05D003934 ORTHO05D005108 1.7e-06 55.8 46 63.0
CANSAT11G0158 Cannabis sativa HOM05D003934 ORTHO05D005108 2.2e-06 55.5 48 62.5
Os03g0717600 Oryza sativa ssp. japonica HOM05D003934 ORTHO05D005108 2.9e-06 55.1 46 63.0
MSTRG.8665 Avicennia marina HOM05D003934 ORTHO05D005108 3.8e-06 54.7 49 61.2
A03p02600 Brassica napus HOM05D003934 ORTHO05D005108 3.8e-06 54.7 46 63.0
BraA03t09621Z Brassica rapa HOM05D003934 ORTHO05D005108 3.8e-06 54.7 46 63.0
arahy.Tifrunner.gnm1.ann1.W6P66N Arachis hypogaea HOM05D003934 ORTHO05D005108 5.0e-06 54.3 48 62.5
arahy.Tifrunner.gnm1.ann1.WX46MS Arachis hypogaea HOM05D003934 ORTHO05D005108 5.0e-06 54.3 48 62.5
AUR62006111 Chenopodium quinoa HOM05D003934 ORTHO05D005108 5.0e-06 54.3 46 63.0
Eucgr.A01467 Eucalyptus grandis HOM05D003934 ORTHO05D005108 5.0e-06 54.3 48 62.5
HanXRQChr09g0252981 Helianthus annuus HOM05D003934 ORTHO05D005108 5.0e-06 54.3 48 60.4
Lj1C1015T5 Lonicera japonica HOM05D003934 ORTHO05D005108 5.0e-06 54.3 46 63.0
SGA_v2.0_scaffold44G16789 Striga asiatica HOM05D003934 ORTHO05D005108 5.0e-06 54.3 48 60.4
Ca_16696_v3 Cicer arietinum L. HOM05D003934 ORTHO05D005108 6.5e-06 53.9 48 62.5
Duzib068G1159 Durio zibethinus HOM05D003934 ORTHO05D005108 6.5e-06 53.9 48 62.5
Glyma.04G236800 Glycine max HOM05D003934 ORTHO05D005108 6.5e-06 53.9 48 62.5
Lsat_1_v5_gn_9_58300 Lactuca sativa HOM05D003934 ORTHO05D005108 6.5e-06 53.9 46 63.0
Lj1g0022752 Lotus japonicus HOM05D003934 ORTHO05D005108 6.5e-06 53.9 48 62.5
THA.LOC104816810 Tarenaya hassleriana HOM05D003934 ORTHO05D005108 6.5e-06 53.9 48 62.5
COL.COLO4_11261 Corchorus olitorius HOM05D003934 ORTHO05D005108 8.5e-06 53.5 48 60.4
Lalb_Chr08g0240341 Lupinus albus HOM05D003934 ORTHO05D005108 8.5e-06 53.5 46 63.0


User provided reference genes

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