Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0602G065 Amborella trichopoda HOM05D000590 ORTHO05D006825 4.4e-180 634.4 301 100.0
Phvul.010G113800 Phaseolus vulgaris HOM05D000590 ORTHO05D006825 9.1e-109 397.5 302 60.9
Lj3g0003332 Lotus japonicus HOM05D000590 ORTHO05D006825 6.5e-107 391.3 302 58.6
Psat4g160760 Pisum sativum HOM05D000590 ORTHO05D006825 1.4e-106 390.2 303 58.7
Glyma.16G025000 Glycine max HOM05D000590 ORTHO05D006825 1.9e-106 389.8 302 59.6
TPR.G15352 Trifolium pratense HOM05D000590 ORTHO05D006825 4.2e-106 388.7 274 62.0
Nn2g14772 Nelumbo nucifera HOM05D000590 ORTHO05D006825 2.7e-105 386.0 305 59.7
Haze_15659 Corylus avellana HOM05D000590 ORTHO05D006825 1.0e-104 384.0 304 58.2
Cfa003800 Carpinus fangiana HOM05D000590 ORTHO05D001713 8.8e-104 380.9 304 57.9
Solyc01g095870.3 Solanum lycopersicum HOM05D000590 ORTHO05D006825 1.5e-103 380.2 302 57.6
Sopen01g039610 Solanum pennellii HOM05D000590 ORTHO05D006825 1.5e-103 380.2 302 57.6
Lj7A501T47 Lonicera japonica HOM05D000590 ORTHO05D006825 1.7e-102 376.7 274 59.9
Lsat_1_v5_gn_7_1240 Lactuca sativa HOM05D000590 ORTHO05D006825 8.2e-102 374.4 272 60.7
GSVIVG01027095001 Vitis vinifera HOM05D000590 ORTHO05D006825 8.2e-102 374.4 301 57.8
Peaxi162Scf00786g00323 Petunia axillaris HOM05D000590 ORTHO05D006825 1.1e-101 374.0 304 56.6
GSVIVG01027098001 Vitis vinifera HOM05D000590 ORTHO05D006825 1.4e-101 373.6 301 57.5
Dinv35112 Davidia involucrata HOM05D000590 ORTHO05D006825 1.5e-100 370.2 303 56.8
QL04p061137 Quercus lobata HOM05D000590 ORTHO05D006825 2.0e-100 369.8 301 55.1
Rhsim01G0172200 Rhododendron simsii HOM05D000590 ORTHO05D006825 3.4e-100 369.0 274 59.5
Prupe.2G187500 Prunus persica HOM05D000590 ORTHO05D006825 5.9e-100 368.2 304 57.2
PGR031G1800 Punica granatum HOM05D000590 ORTHO05D006825 5.9e-100 368.2 307 56.0
Cc02_g39290 Coffea canephora HOM05D000590 ORTHO05D006825 1.3e-99 367.1 304 55.3
FAN10G3131 Fragaria x ananassa HOM05D000590 ORTHO05D006825 1.3e-99 367.1 301 56.5
Migut.B01870 Erythranthe guttata HOM05D000590 ORTHO05D006825 1.7e-99 366.7 302 56.0
MD01G1080100 Malus domestica HOM05D000590 ORTHO05D006825 1.7e-99 366.7 305 56.7
TWI14G0815 Tripterygium wilfordii HOM05D000590 ORTHO05D006825 1.7e-99 366.7 303 56.4
HanXRQChr04g0120221 Helianthus annuus HOM05D000590 ORTHO05D006825 2.9e-99 365.9 304 55.3
FAN10G1076 Fragaria x ananassa HOM05D000590 ORTHO05D006825 3.8e-99 365.5 301 56.5
CAN.G986.8 Capsicum annuum HOM05D000590 ORTHO05D006825 5.0e-99 365.2 274 59.9
AUR62004487 Chenopodium quinoa HOM05D000590 ORTHO05D006825 5.0e-99 365.2 305 53.8
RcHm_v2.0_Chr1g0359371 Rosa chinensis HOM05D000590 ORTHO05D006825 6.5e-99 364.8 301 56.8
SalBow3G4091 Salvia bowleyana HOM05D000590 ORTHO05D006825 6.5e-99 364.8 304 55.6
AUR62023466 Chenopodium quinoa HOM05D000590 ORTHO05D006825 1.4e-98 363.6 304 53.9
TWI59G0780 Tripterygium wilfordii HOM05D000590 ORTHO05D006825 1.4e-98 363.6 303 56.1
FAN06G0495 Fragaria x ananassa HOM05D000590 ORTHO05D006825 1.9e-98 363.2 301 55.5
Nitab4.5_0004999g0020 Nicotiana tabacum HOM05D000590 ORTHO05D006825 3.2e-98 362.5 273 57.5
FAN06G0513 Fragaria x ananassa HOM05D000590 ORTHO05D006825 7.2e-98 361.3 301 55.1
Gohir.D08G044900 Gossypium hirsutum HOM05D000590 ORTHO05D006825 7.2e-98 361.3 301 54.8
CANSAT56G2355 Cannabis sativa HOM05D000590 ORTHO05D006825 1.2e-97 360.5 306 54.6
AL5G44280 Arabidopsis lyrata HOM05D000590 ORTHO05D006825 2.1e-97 359.8 291 56.4
Duzib133G1228 Durio zibethinus HOM05D000590 ORTHO05D006825 2.1e-97 359.8 301 54.2
Gohir.A08G034400 Gossypium hirsutum HOM05D000590 ORTHO05D006825 2.1e-97 359.8 301 54.5
Gorai.004G043900 Gossypium raimondii HOM05D000590 ORTHO05D006825 2.1e-97 359.8 301 54.5
Oeu015362.1 Olea europaea HOM05D000590 ORTHO05D006825 2.7e-97 359.4 299 55.9
FvH4_7g16360 Fragaria vesca HOM05D000590 ORTHO05D006825 3.6e-97 359.0 301 55.5
Nitab4.5_0000838g0230 Nicotiana tabacum HOM05D000590 ORTHO05D006825 3.6e-97 359.0 271 57.6
FAN01G2486 Fragaria x ananassa HOM05D000590 ORTHO05D006825 6.1e-97 358.2 301 54.8
Actinidia28121 Actinidia chinensis HOM05D000590 ORTHO05D006825 8.0e-97 357.8 274 58.4
AT3G61730 Arabidopsis thaliana HOM05D000590 ORTHO05D006825 1.8e-96 356.7 291 56.0
Medtr8g027735 Medicago truncatula HOM05D000590 ORTHO05D006825 6.7e-96 354.8 276 58.7
Aqoxy5G04231 Aquilegia oxysepala HOM05D000590 ORTHO05D006825 2.0e-95 353.2 264 61.7
Thhalv10006430m.g Eutrema salsugineum HOM05D000590 ORTHO05D006825 2.0e-95 353.2 291 55.0
AT5G36000 Arabidopsis thaliana HOM05D000590 ORTHO05D006825 2.6e-95 352.8 291 55.0
MELO3C022415.2 Cucumis melo HOM05D000590 ORTHO05D006825 3.3e-95 352.4 313 55.0
THA.LOC104817360 Tarenaya hassleriana HOM05D000590 ORTHO05D006825 4.4e-95 352.1 291 55.3
PSO782G3674 Papaver somniferum HOM05D000590 ORTHO05D006825 7.4e-95 351.3 298 56.4
Ca_23539_v3 Cicer arietinum L. HOM05D000590 ORTHO05D006825 1.7e-94 350.1 275 57.8
CsaV3_6G007130 Cucumis sativus L. HOM05D000590 ORTHO05D006825 2.2e-94 349.7 313 54.3
EL10Ac1g00275 Beta vulgaris HOM05D000590 ORTHO05D006825 4.8e-94 348.6 270 56.3
Manes.01G246600 Manihot esculenta HOM05D000590 ORTHO05D006825 6.3e-94 348.2 306 52.0
Potri.014G098300 Populus trichocarpa HOM05D000590 ORTHO05D006825 6.3e-94 348.2 303 52.5
BcaB02g08143 Brassica carinata HOM05D000590 ORTHO05D006825 1.4e-93 347.1 301 53.5
CARHR172060 Cardamine hirsuta HOM05D000590 ORTHO05D006825 1.4e-93 347.1 291 54.3
PSO478G0645 Papaver somniferum HOM05D000590 ORTHO05D006825 1.4e-93 347.1 278 57.9
FAN03G1068 Fragaria x ananassa HOM05D000590 ORTHO05D006825 2.4e-93 346.3 290 54.1
THA.LOC104802069 Tarenaya hassleriana HOM05D000590 ORTHO05D006825 2.4e-93 346.3 291 56.0
Migut.N01547 Erythranthe guttata HOM05D000590 ORTHO05D006825 7.0e-93 344.7 304 53.0
Ciclev10023676m.g Citrus clementina HOM05D000590 ORTHO05D006825 9.1e-93 344.4 274 56.6
Aa31LG10G15730 Aethionema arabicum HOM05D000590 ORTHO05D001713 1.6e-92 343.6 288 55.2
BolC6t37952H Brassica oleracea HOM05D000590 ORTHO05D006825 1.6e-92 343.6 293 53.6
Eucgr.D02371 Eucalyptus grandis HOM05D000590 ORTHO05D006825 1.1e-90 337.4 292 55.1
vmacro12678 Vaccinium macrocarpon HOM05D000590 ORTHO05D001713 5.5e-90 335.1 321 50.8
SGA_v2.0_scaffold5G03015 Striga asiatica HOM05D000590 ORTHO05D006825 2.7e-89 332.8 276 56.2
CiPaw.02G040500 Carya illinoinensis HOM05D000590 ORTHO05D006825 8.0e-89 331.3 302 51.7
Duzib138G1692 Durio zibethinus HOM05D000590 ORTHO05D006825 1.4e-88 330.5 279 53.8
Ah.05g179600 Amaranthus hybridus HOM05D000590 ORTHO05D006825 5.2e-88 328.6 285 53.0
Atru.chr5.661 Acer truncatum HOM05D000590 ORTHO05D006825 6.7e-88 328.2 302 52.0
BraA04t15812Z Brassica rapa HOM05D000590 ORTHO05D006825 2.0e-87 326.6 293 53.6
DCAR_006973 Daucus carota HOM05D000590 ORTHO05D006825 1.6e-84 317.0 307 48.9
Sed0003230 Sechium edule HOM05D000590 ORTHO05D006825 4.5e-84 315.5 309 52.1
BraA07t30209Z Brassica rapa HOM05D004730 ORTHO05D005705 1.5e-82 310.5 265 52.8
Sabra14G0072100 Salix brachista HOM05D000590 ORTHO05D001713 1.5e-82 310.5 321 47.0
ECA236G1053 Erigeron canadensis HOM05D000590 ORTHO05D001713 4.2e-82 308.9 245 55.9
Oeu004946.1 Olea europaea HOM05D000590 ORTHO05D006825 3.4e-79 299.3 264 53.8
MBI06_g08454_MAGBIO Magnolia biondii HOM05D000590 ORTHO05D006825 7.5e-79 298.1 217 63.1
C06p27910 Brassica napus HOM05D000590 ORTHO05D006825 4.8e-78 295.4 287 48.1
PGSC0003DMG400000222 Solanum tuberosum HOM05D000590 ORTHO05D006825 8.3e-78 294.7 239 56.9
Sp5g01640 Schrenkiella parvula HOM05D000590 ORTHO05D006825 4.2e-74 282.3 291 47.1
SEGI_08329 Sequoiadendron giganteum HOM05D000590 ORTHO05D006825 3.6e-73 279.3 274 49.6
A04p00950 Brassica napus HOM05D000590 ORTHO05D006825 2.3e-72 276.6 300 46.7
A07p25690 Brassica napus HOM05D004730 ORTHO05D005705 3.0e-72 276.2 265 48.3
C06p27850 Brassica napus HOM05D004730 ORTHO05D006825 8.9e-72 274.6 265 47.9
Thecc.01G343200 Theobroma cacao HOM05D000590 ORTHO05D006825 2.0e-71 273.5 213 57.7
Cpa.g.sc96.9 Carica papaya HOM05D000590 ORTHO05D006825 3.4e-71 272.7 291 47.4
Carub.0005s2847 Capsella rubella HOM05D000590 ORTHO05D006825 3.7e-70 269.2 227 52.4
VMungo0331G1406 Vigna mungo HOM05D000590 ORTHO05D000717 3.1e-69 266.2 190 63.2
Pp3c6_8570 Physcomitrium patens HOM05D000590 ORTHO05D006825 1.3e-67 260.8 273 45.1
Lalb_Chr10g0100491 Lupinus albus HOM05D000590 ORTHO05D006825 6.6e-67 258.5 191 61.3
AagrBONN_evm.TU.Sc2ySwM_344.2724 Anthoceros agrestis HOM05D000590 ORTHO05D006825 2.5e-66 256.5 251 47.4
Os01g0219200 Oryza sativa ssp. japonica HOM05D000590 ORTHO05D006825 4.7e-65 252.3 303 44.9
MSTRG.17339 Avicennia marina HOM05D000590 ORTHO05D006825 6.1e-65 251.9 191 60.7
TAR375G0589 Trochodendron aralioides HOM05D000590 ORTHO05D006825 6.1e-65 251.9 180 62.8
C04p31120 Brassica napus HOM05D000590 ORTHO05D006825 8.0e-65 251.5 254 49.2
HPP92_002828 Vanilla planifolia HOM05D000590 ORTHO05D006825 2.6e-63 246.5 311 43.4
ClCG06G001200 Citrullus lanatus HOM05D000590 ORTHO05D006825 3.4e-63 246.1 320 42.8
BcaB02g08144 Brassica carinata HOM05D000590 ORTHO05D006825 8.6e-59 231.5 200 54.5
COL.COLO4_06291 Corchorus olitorius HOM05D000590 ORTHO05D000717 2.5e-58 229.9 275 42.5
SMO164G0232 Selaginella moellendorffii HOM05D000590 ORTHO05D006825 1.2e-57 227.6 282 42.2
SMO200G0118 Selaginella moellendorffii HOM05D000590 ORTHO05D006825 7.5e-55 218.4 282 40.8
CBR_g71803 Chara braunii HOM05D000590 ORTHO05D006825 1.2e-52 211.1 348 34.5
CDE02G2715 Ceratophyllum demersum HOM05D000590 ORTHO05D006825 1.6e-52 210.7 193 52.3
CBR_g49078 Chara braunii HOM05D000590 ORTHO05D006825 3.5e-52 209.5 338 34.3
BcaC02g10247 Brassica carinata HOM05D000590 ORTHO05D006825 2.3e-51 206.8 191 53.9
Mapoly0251s0003 Marchantia polymorpha HOM05D000590 ORTHO05D006825 3.0e-51 206.5 303 37.6
Glyma.07G056100 Glycine max HOM05D000590 ORTHO05D006825 4.4e-47 192.6 186 48.4
arahy.Tifrunner.gnm1.ann1.0G81PD Arachis hypogaea HOM05D000590 ORTHO05D006825 1.4e-45 187.6 208 46.6
SMO338G0043 Selaginella moellendorffii HOM05D004142 ORTHO05D005411 2.1e-44 183.7 272 37.5
GSVIVG01027114001 Vitis vinifera HOM05D000590 ORTHO05D006825 8.6e-43 178.3 186 48.9
arahy.Tifrunner.gnm1.ann1.AM6JUY Arachis hypogaea HOM05D000590 ORTHO05D006825 8.1e-41 171.8 127 59.8
Zm00001eb338700 Zea mays HOM05D000590 ORTHO05D006825 3.1e-40 169.9 277 35.7
CSS0016052 Camellia sinensis var. sinensis HOM05D000590 ORTHO05D006825 2.6e-39 166.8 117 62.4
CDE02G3030 Ceratophyllum demersum HOM05D000590 ORTHO05D006825 5.8e-39 165.6 119 62.2
Rhsim02G0230200 Rhododendron simsii HOM05D000590 ORTHO05D006825 1.3e-38 164.5 236 36.4
SEGI_01413 Sequoiadendron giganteum HOM05D000590 ORTHO05D006825 6.4e-38 162.2 119 59.7
HanXRQChr09g0243571 Helianthus annuus HOM05D000590 ORTHO05D006825 4.2e-37 159.5 129 56.6
Sc26g0000660 Simmondsia chinensis HOM05D000590 ORTHO05D006825 1.2e-36 157.9 186 43.5
PSO063G6641 Papaver somniferum HOM05D000590 ORTHO05D006825 1.7e-35 154.1 123 55.3
CSS0003243 Camellia sinensis var. sinensis HOM05D000590 ORTHO05D006825 3.0e-35 153.3 135 53.3
Sc26g0000670 Simmondsia chinensis HOM05D000590 ORTHO05D006825 1.5e-34 151.0 119 57.1
TPR.G3009 Trifolium pratense HOM05D000590 ORTHO05D006825 5.8e-31 139.0 107 58.9
AT3G62500 Arabidopsis thaliana HOM05D000590 ORTHO05D006825 7.1e-29 132.1 165 44.2
Lalb_Chr10g0100501 Lupinus albus HOM05D000590 ORTHO05D006825 2.4e-21 107.1 105 47.6
VMungo0331G1881 Vigna mungo HOM05D000590 ORTHO05D006825 4.6e-20 102.8 102 48.0
BolC4t24651H Brassica oleracea HOM05D000590 ORTHO05D006825 1.9e-18 97.4 126 38.9
GSVIVG01027101001 Vitis vinifera HOM05D000590 ORTHO05D006825 9.6e-18 95.1 93 48.4
arahy.Tifrunner.gnm1.ann1.06LZL4 Arachis hypogaea HOM05D000590 ORTHO05D006825 2.1e-17 94.0 62 64.5
CARHR055570 Cardamine hirsuta HOM05D000590 ORTHO05D006825 1.2e-15 88.2 78 44.9
SHI13292 Sapria himalayana HOM05D000590 ORTHO05D006825 9.9e-15 85.1 74 54.1
Sabra02G0141900 Salix brachista HOM05D000590 ORTHO05D006825 1.1e-13 81.6 183 31.7
SHI13291 Sapria himalayana HOM05D000590 ORTHO05D006825 1.2e-12 78.2 63 57.1
unitig_747.g21341 Utricularia gibba HOM05D000590 ORTHO05D006825 4.6e-12 76.3 73 57.5
Zm00001eb119810 Zea mays HOM05D000590 ORTHO05D006825 4.6e-12 76.3 74 50.0
BcaC02g10248 Brassica carinata HOM05D000590 ORTHO05D006825 3.9e-11 73.2 49 49.0
GSVIVG01027108001 Vitis vinifera HOM05D000590 ORTHO05D006825 8.7e-11 72.0 63 50.8


User provided reference genes

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