Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0602G053 Amborella trichopoda HOM05D006699 ORTHO05D008399 4.3e-201 704.5 370 100.0
Dinv15443 Davidia involucrata HOM05D006699 ORTHO05D008399 2.0e-118 429.9 327 66.7
TAR626G0153 Trochodendron aralioides HOM05D006699 ORTHO05D008399 1.3e-117 427.2 353 64.9
CSS0012388 Camellia sinensis var. sinensis HOM05D006699 ORTHO05D008399 9.4e-116 421.0 322 68.0
Thecc.01G150500 Theobroma cacao HOM05D006699 ORTHO05D008399 4.7e-115 418.7 325 65.8
Ciclev10015418m.g Citrus clementina HOM05D006699 ORTHO05D008399 2.6e-113 412.9 320 66.6
CDE10G1046 Ceratophyllum demersum HOM05D006699 ORTHO05D008399 3.3e-113 412.5 324 68.2
PGR042G0843 Punica granatum HOM05D006699 ORTHO05D008399 9.7e-113 411.0 322 64.9
GSVIVG01020707001 Vitis vinifera HOM05D006699 ORTHO05D008399 9.7e-113 411.0 324 66.0
Potri.014G142200 Populus trichocarpa HOM05D006699 ORTHO05D008399 2.2e-112 409.8 324 67.0
VMungo1127G1340 Vigna mungo HOM05D006699 ORTHO05D008399 1.4e-111 407.1 319 64.3
Cfa023335 Carpinus fangiana HOM05D006699 ORTHO05D008399 2.4e-111 406.4 325 64.6
Glyma.06G277600 Glycine max HOM05D006699 ORTHO05D008399 7.0e-111 404.8 319 63.9
MD09G1238000 Malus domestica HOM05D006699 ORTHO05D008399 9.1e-111 404.4 322 64.0
MD17G1230900 Malus domestica HOM05D006699 ORTHO05D008399 9.1e-111 404.4 322 64.3
Rhsim06G0131200 Rhododendron simsii HOM05D006699 ORTHO05D008399 1.6e-110 403.7 318 63.5
CiPaw.04G132200 Carya illinoinensis HOM05D006699 ORTHO05D008399 2.0e-110 403.3 325 63.1
Gohir.A12G086400 Gossypium hirsutum HOM05D006699 ORTHO05D008399 2.0e-110 403.3 323 65.0
PGSC0003DMG400007857 Solanum tuberosum HOM05D006699 ORTHO05D008399 2.0e-110 403.3 321 65.4
QL08p041638 Quercus lobata HOM05D006699 ORTHO05D008399 2.6e-110 402.9 323 63.2
Peaxi162Scf00384g00423 Petunia axillaris HOM05D006699 ORTHO05D008399 5.9e-110 401.7 340 62.9
Phvul.011G130500 Phaseolus vulgaris HOM05D006699 ORTHO05D008399 7.7e-110 401.4 319 63.3
arahy.Tifrunner.gnm1.ann1.GAG0UF Arachis hypogaea HOM05D006699 ORTHO05D008399 1.3e-109 400.6 320 64.4
HanXRQChr17g0557951 Helianthus annuus HOM05D006699 ORTHO05D008399 1.3e-109 400.6 317 63.7
QL08p041677 Quercus lobata HOM05D006699 ORTHO05D008399 1.7e-109 400.2 323 62.8
Gohir.D12G085000 Gossypium hirsutum HOM05D006699 ORTHO05D008399 3.8e-109 399.1 323 64.1
arahy.Tifrunner.gnm1.ann1.0K2T49 Arachis hypogaea HOM05D006699 ORTHO05D008399 5.0e-109 398.7 320 64.4
Lj3g0015335 Lotus japonicus HOM05D006699 ORTHO05D008399 5.0e-109 398.7 322 62.7
CANSAT64G2599 Cannabis sativa HOM05D006699 ORTHO05D008399 8.5e-109 397.9 319 62.1
Gorai.008G095400 Gossypium raimondii HOM05D006699 ORTHO05D008399 8.5e-109 397.9 321 64.2
Lalb_Chr01g0006001 Lupinus albus HOM05D006699 ORTHO05D008399 8.5e-109 397.9 313 65.8
COL.COLO4_33580 Corchorus olitorius HOM05D006699 ORTHO05D008399 1.5e-108 397.1 335 60.9
TWI59G0496 Tripterygium wilfordii HOM05D006699 ORTHO05D008399 1.9e-108 396.7 321 64.2
Ca_18111_v3 Cicer arietinum L. HOM05D006699 ORTHO05D008399 2.5e-108 396.4 321 62.6
FvH4_6g27380 Fragaria vesca HOM05D006699 ORTHO05D008399 4.2e-108 395.6 318 65.1
RcHm_v2.0_Chr2g0129651 Rosa chinensis HOM05D006699 ORTHO05D008399 1.2e-107 394.0 322 64.0
Haze_13371 Corylus avellana HOM05D006699 ORTHO05D008399 2.1e-107 393.3 325 63.1
Psat7g165360 Pisum sativum HOM05D006699 ORTHO05D008399 3.6e-107 392.5 321 60.4
Prupe.3G118500 Prunus persica HOM05D006699 ORTHO05D008399 4.7e-107 392.1 323 61.9
Lj1A681T38 Lonicera japonica HOM05D006699 ORTHO05D008399 2.3e-106 389.8 325 62.2
Sabra14G0107300 Salix brachista HOM05D006699 ORTHO05D008399 3.0e-106 389.4 339 63.4
Sopen12g006230 Solanum pennellii HOM05D006699 ORTHO05D008399 8.8e-106 387.9 314 64.6
Eucgr.A01914 Eucalyptus grandis HOM05D006699 ORTHO05D008399 1.2e-105 387.5 312 62.8
Solyc12g010870.3 Solanum lycopersicum HOM05D006699 ORTHO05D008399 5.7e-105 385.2 320 63.8
MSTRG.15092 Avicennia marina HOM05D006699 ORTHO05D008399 7.5e-105 384.8 325 61.2
AL4G26070 Arabidopsis lyrata HOM05D006699 ORTHO05D008399 2.2e-104 383.3 321 59.5
AL4G26150 Arabidopsis lyrata HOM05D006699 ORTHO05D008399 2.8e-104 382.9 321 59.5
A04p23730 Brassica napus HOM05D006699 ORTHO05D008399 2.8e-104 382.9 319 60.5
BraA04t17899Z Brassica rapa HOM05D006699 ORTHO05D008399 3.7e-104 382.5 319 60.2
Carub.0004s1225 Capsella rubella HOM05D006699 ORTHO05D008399 3.7e-104 382.5 321 59.8
CAN.G1049.6 Capsicum annuum HOM05D006699 ORTHO05D008399 8.3e-104 381.3 328 61.3
FAN14G2123 Fragaria x ananassa HOM05D006699 ORTHO05D008399 3.1e-103 379.4 331 62.2
AT2G31040 Arabidopsis thaliana HOM05D006699 ORTHO05D008399 4.1e-103 379.0 321 59.2
EL10Ac2g03349 Beta vulgaris HOM05D006699 ORTHO05D008399 9.1e-103 377.9 319 61.8
C04p60180 Brassica napus HOM05D006699 ORTHO05D008399 9.1e-103 377.9 319 59.9
BolC4t27520H Brassica oleracea HOM05D006699 ORTHO05D008399 9.1e-103 377.9 319 59.9
ClCG02G017820 Citrullus lanatus HOM05D006699 ORTHO05D008399 9.1e-103 377.9 352 59.4
Medtr4g079850 Medicago truncatula HOM05D006699 ORTHO05D008399 2.0e-102 376.7 339 57.5
AUR62039018 Chenopodium quinoa HOM05D006699 ORTHO05D008399 2.7e-102 376.3 324 59.0
ECA233G1148 Erigeron canadensis HOM05D000006 ORTHO05D000001 2.7e-102 376.3 322 59.9
Os01g0673800 Oryza sativa ssp. japonica HOM05D006699 ORTHO05D008399 3.5e-102 375.9 329 59.9
Sp4g13510 Schrenkiella parvula HOM05D006699 ORTHO05D008399 3.5e-102 375.9 318 60.7
CARHR124570 Cardamine hirsuta HOM05D006699 ORTHO05D008399 5.9e-102 375.2 321 57.6
CsaV3_6G018450 Cucumis sativus L. HOM05D006699 ORTHO05D008399 1.0e-101 374.4 353 57.5
PSO229G0039 Papaver somniferum HOM05D006699 ORTHO05D008399 1.3e-101 374.0 359 56.5
Thhalv10016897m.g Eutrema salsugineum HOM05D006699 ORTHO05D008399 2.2e-101 373.2 322 59.9
Actinidia11153 Actinidia chinensis HOM05D006699 ORTHO05D008399 3.8e-101 372.5 327 62.1
SGA_v2.0_scaffold9G04816 Striga asiatica HOM05D006699 ORTHO05D008399 5.0e-101 372.1 312 60.9
unitig_0.g2026 Utricularia gibba HOM05D006699 ORTHO05D008399 6.5e-101 371.7 338 59.5
FAN09G4348 Fragaria x ananassa HOM05D006699 ORTHO05D008399 1.5e-100 370.5 350 59.1
Manes.02G091200 Manihot esculenta HOM05D006699 ORTHO05D008399 2.5e-100 369.8 351 59.3
PSO675G3944 Papaver somniferum HOM05D006699 ORTHO05D008399 5.5e-100 368.6 348 56.3
Lsat_1_v5_gn_8_140640 Lactuca sativa HOM05D006699 ORTHO05D008399 1.2e-99 367.5 344 56.4
Nitab4.5_0000537g0130 Nicotiana tabacum HOM05D006699 ORTHO05D008399 1.2e-99 367.5 351 59.0
Migut.M00261 Erythranthe guttata HOM05D006699 ORTHO05D008399 2.7e-99 366.3 323 59.8
Nitab4.5_0001095g0100 Nicotiana tabacum HOM05D006699 ORTHO05D008399 1.3e-96 357.5 309 62.5
Solyc07g055050.3 Solanum lycopersicum HOM05D006699 ORTHO05D008399 4.9e-96 355.5 320 60.0
Sopen07g027160 Solanum pennellii HOM05D006699 ORTHO05D008399 6.3e-96 355.1 320 60.3
PGSC0003DMG400020443 Solanum tuberosum HOM05D006699 ORTHO05D008399 2.4e-95 353.2 320 59.7
Hund07812 Selenicereus undatus HOM05D006699 ORTHO05D008399 5.4e-95 352.1 338 56.2
DCAR_017060 Daucus carota HOM05D006699 ORTHO05D008399 1.7e-93 347.1 370 52.7
Sc06g0009080 Simmondsia chinensis HOM05D006699 ORTHO05D008399 8.0e-91 338.2 273 60.8
FAN02G3357 Fragaria x ananassa HOM05D006699 ORTHO05D008399 8.9e-90 334.7 305 59.3
Nitab4.5_0011277g0010 Nicotiana tabacum HOM05D006699 ORTHO05D008399 1.1e-87 327.8 356 52.8
Aqoxy1G02064 Aquilegia oxysepala HOM05D006699 ORTHO05D008399 9.2e-87 324.7 271 63.8
HPP92_009665 Vanilla planifolia HOM05D006699 ORTHO05D008399 9.2e-87 324.7 368 51.1
Nitab4.5_0009754g0010 Nicotiana tabacum HOM05D006699 ORTHO05D008399 5.9e-86 322.0 304 57.9
Manes.01G133200 Manihot esculenta HOM05D006699 ORTHO05D008399 3.3e-84 316.2 253 64.8
Aa31LG1G7380 Aethionema arabicum HOM05D006699 ORTHO05D008399 5.6e-84 315.5 311 53.4
Lju1655A0G36 Lonicera japonica HOM05D006699 ORTHO05D008399 3.7e-80 302.8 383 47.8
Peaxi162Scf00469g00217 Petunia axillaris HOM05D006699 ORTHO05D008399 2.4e-79 300.1 318 54.4
Sed0000889 Sechium edule HOM05D006699 ORTHO05D008399 9.2e-79 298.1 253 62.5
Pp3c8_13580 Physcomitrium patens HOM05D006699 ORTHO05D008399 4.6e-78 295.8 320 49.1
Sed0016519 Sechium edule HOM05D006699 ORTHO05D008399 2.3e-77 293.5 324 52.2
Mapoly0038s0046 Marchantia polymorpha HOM05D006699 ORTHO05D008399 3.9e-77 292.7 313 50.8
TPR.G28306 Trifolium pratense HOM05D006699 ORTHO05D008399 2.5e-76 290.0 243 60.1
AUR62037610 Chenopodium quinoa HOM05D006426 ORTHO05D008399 4.7e-75 285.8 245 61.2
Cc05_g08340 Coffea canephora HOM05D006699 ORTHO05D008399 2.3e-74 283.5 223 63.2
Oeu018752.1 Olea europaea HOM05D006699 ORTHO05D008399 4.0e-74 282.7 243 60.9
SEGI_23271 Sequoiadendron giganteum HOM05D006699 ORTHO05D008399 5.2e-74 282.3 238 59.2
MELO3C013567.2 Cucumis melo HOM05D006699 ORTHO05D008399 6.8e-74 282.0 248 62.1
Eucgr.K01127 Eucalyptus grandis HOM05D006699 ORTHO05D008399 2.2e-72 276.9 311 52.4
vmacro12376 Vaccinium macrocarpon HOM05D006699 ORTHO05D008399 1.0e-69 268.1 341 45.7
AagrBONN_evm.TU.Sc2ySwM_228.3020 Anthoceros agrestis HOM05D006699 ORTHO05D008399 1.4e-66 257.7 282 48.6
Ah.01g003530 Amaranthus hybridus HOM05D006426 ORTHO05D007737 1.9e-63 247.3 191 64.9
Zm00001eb360100 Zea mays HOM05D006699 ORTHO05D008399 8.1e-59 231.9 220 55.9
SMO014G0045 Selaginella moellendorffii HOM05D006699 ORTHO05D008399 2.9e-56 223.4 328 42.1
Atru.chr6.2796 Acer truncatum HOM05D006699 ORTHO05D008399 2.4e-55 220.3 186 60.2
Cpa.g.sc52.174 Carica papaya HOM05D006699 ORTHO05D008399 2.1e-51 207.2 170 62.9
Cc05_g08350 Coffea canephora HOM05D006699 ORTHO05D008399 3.9e-29 133.3 108 64.8
Cre01.g049600 Chlamydomonas reinhardtii HOM05D006699 ORTHO05D008399 6.9e-26 122.5 278 31.3
Atru.chr6.2795 Acer truncatum HOM05D006699 ORTHO05D008399 6.1e-22 109.4 79 65.8
vmacro12375 Vaccinium macrocarpon HOM05D006699 ORTHO05D008399 7.9e-22 109.0 74 66.2
Ah.01g003520 Amaranthus hybridus HOM05D006699 ORTHO05D008399 5.3e-18 96.3 67 59.7
CDE10G0215 Ceratophyllum demersum HOM05D006699 ORTHO05D008399 9.0e-18 95.5 66 71.2
BraA03t11005Z Brassica rapa HOM05D006699 ORTHO05D008399 1.1e-15 88.6 92 54.3
PRCOL_00001453 Prasinoderma coloniale HOM05D006699 ORTHO05D008399 3.2e-15 87.0 271 29.9
A03p17330 Brassica napus HOM05D006699 ORTHO05D008399 9.4e-15 85.5 90 53.3
MCO04G044 Micromonas commoda HOM05D006699 ORTHO05D008399 1.8e-13 81.3 286 28.0
Lsat_1_v5_gn_2_38761 Lactuca sativa HOM05D006699 ORTHO05D008399 5.1e-13 79.7 77 50.6
TPR.G33085 Trifolium pratense HOM05D006699 ORTHO05D008399 2.7e-06 57.4 43 60.5
C03p20440 Brassica napus HOM05D006699 ORTHO05D042655 6.1e-06 56.2 62 50.0
BolC3t14422H Brassica oleracea HOM05D006699 ORTHO05D042655 6.1e-06 56.2 62 50.0


User provided reference genes

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