Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0602G050 Amborella trichopoda HOM05D004700 ORTHO05D005576 6.3e-161 570.9 319 100.0
Nn6g34422 Nelumbo nucifera HOM05D004700 ORTHO05D005576 2.5e-109 399.4 318 73.0
Phvul.011G168700 Phaseolus vulgaris HOM05D004700 ORTHO05D005576 1.8e-107 393.3 318 62.6
vmacro11972 Vaccinium macrocarpon HOM05D004700 ORTHO05D005576 4.0e-107 392.1 318 74.2
PSO675G6346 Papaver somniferum HOM05D004700 ORTHO05D005576 3.4e-106 389.0 318 72.3
QL08p024163 Quercus lobata HOM05D004700 ORTHO05D005576 9.9e-106 387.5 318 69.8
Prupe.4G156500 Prunus persica HOM05D004700 ORTHO05D005576 4.9e-105 385.2 318 69.2
Actinidia03618 Actinidia chinensis HOM05D004700 ORTHO05D005576 8.4e-105 384.4 319 72.4
Sabra11G0081100 Salix brachista HOM05D004700 ORTHO05D005576 1.4e-104 383.6 319 71.5
Haze_09248 Corylus avellana HOM05D004700 ORTHO05D005576 2.4e-104 382.9 319 71.5
Glyma.15G209600 Glycine max HOM05D004700 ORTHO05D005576 2.4e-104 382.9 318 65.7
Actinidia12604 Actinidia chinensis HOM05D004700 ORTHO05D005576 3.2e-104 382.5 331 68.0
Ciclev10016084m.g Citrus clementina HOM05D004700 ORTHO05D005576 3.2e-104 382.5 319 71.8
Cc05_g10710 Coffea canephora HOM05D004700 ORTHO05D005576 5.4e-104 381.7 319 71.2
Potri.011G104500 Populus trichocarpa HOM05D004700 ORTHO05D005576 1.2e-103 380.6 319 70.5
PSO541G3766 Papaver somniferum HOM05D004700 ORTHO05D005576 2.1e-103 379.8 318 71.1
GSVIVG01014096001 Vitis vinifera HOM05D004700 ORTHO05D005576 2.7e-103 379.4 320 72.2
Manes.15G098600 Manihot esculenta HOM05D004700 ORTHO05D005576 1.3e-102 377.1 319 67.1
CiPaw.11G155900 Carya illinoinensis HOM05D004700 ORTHO05D005576 1.8e-102 376.7 318 70.8
Eucgr.F03234 Eucalyptus grandis HOM05D004700 ORTHO05D005576 3.0e-102 375.9 319 70.5
HanXRQChr15g0492381 Helianthus annuus HOM05D004700 ORTHO05D005576 3.0e-102 375.9 321 70.4
TPR.G16482 Trifolium pratense HOM05D004700 ORTHO05D005576 3.9e-102 375.6 318 61.3
CSS0040857 Camellia sinensis var. sinensis HOM05D004700 ORTHO05D005576 8.7e-102 374.4 317 70.7
Hma1.2p1_0325F.1_g125830 Hydrangea macrophylla HOM05D004700 ORTHO05D005576 8.7e-102 374.4 323 71.2
Migut.H02024 Erythranthe guttata HOM05D004700 ORTHO05D005576 1.1e-101 374.0 318 63.8
Glyma.09G099300 Glycine max HOM05D004700 ORTHO05D005576 1.9e-101 373.2 318 69.2
DCAR_013348 Daucus carota HOM05D004700 ORTHO05D005576 2.5e-101 372.9 319 70.2
THA.LOC104822577 Tarenaya hassleriana HOM05D004700 ORTHO05D005576 2.5e-101 372.9 320 61.2
Atru.chr2.1968 Acer truncatum HOM05D004700 ORTHO05D005576 1.3e-100 370.5 319 69.6
CiPaw.12G110800 Carya illinoinensis HOM05D004700 ORTHO05D005576 1.6e-100 370.2 318 69.5
MELO3C016116.2 Cucumis melo HOM05D004700 ORTHO05D005576 1.6e-100 370.2 320 68.1
Hma1.2p1_0050F.1_g028780 Hydrangea macrophylla HOM05D004700 ORTHO05D005576 1.6e-100 370.2 320 67.8
Thecc.07G132900 Theobroma cacao HOM05D004700 ORTHO05D005576 1.6e-100 370.2 320 69.7
Atru.chr2.1937 Acer truncatum HOM05D004700 ORTHO05D005576 3.7e-100 369.0 319 69.3
ECA236G3615 Erigeron canadensis HOM05D004700 ORTHO05D005576 8.1e-100 367.9 347 58.2
MBI06_g08516_MAGBIO Magnolia biondii HOM05D004700 ORTHO05D005576 8.1e-100 367.9 334 69.8
Oeu050672.1 Olea europaea HOM05D004700 ORTHO05D005576 1.4e-99 367.1 321 67.0
Lalb_Chr19g0133711 Lupinus albus HOM05D004700 ORTHO05D005576 1.8e-99 366.7 326 60.4
Actinidia39420 Actinidia chinensis HOM05D004700 ORTHO05D005576 2.4e-99 366.3 321 66.4
Medtr8g054400 Medicago truncatula HOM05D004700 ORTHO05D005576 3.1e-99 365.9 313 59.4
Os02g0232100 Oryza sativa ssp. japonica HOM05D004700 ORTHO05D005576 6.9e-99 364.8 319 63.3
Lj3g0009226 Lotus japonicus HOM05D004700 ORTHO05D005576 1.2e-98 364.0 319 61.4
EL10Ac4g08417 Beta vulgaris HOM05D004700 ORTHO05D005576 1.5e-98 363.6 318 68.6
TWI38G0400 Tripterygium wilfordii HOM05D004700 ORTHO05D005576 2.0e-98 363.2 319 66.8
Sp1g40020 Schrenkiella parvula HOM05D004700 ORTHO05D005576 1.7e-97 360.1 322 61.5
AL1G62040 Arabidopsis lyrata HOM05D004700 ORTHO05D005576 2.2e-97 359.8 322 60.9
AT1G53490 Arabidopsis thaliana HOM05D004700 ORTHO05D005576 2.2e-97 359.8 322 61.5
CAN.G68.2 Capsicum annuum HOM05D004700 ORTHO05D005576 2.9e-97 359.4 318 70.4
Carub.0001s4267 Capsella rubella HOM05D004700 ORTHO05D005576 4.9e-97 358.6 322 60.6
Aa31LG10G1720 Aethionema arabicum HOM05D004700 ORTHO05D005576 1.1e-96 357.5 321 63.2
TWI38G0408 Tripterygium wilfordii HOM05D004700 ORTHO05D005576 1.1e-96 357.5 320 60.3
Sed0011117 Sechium edule HOM05D004700 ORTHO05D005576 1.4e-96 357.1 317 65.9
Thhalv10011691m.g Eutrema salsugineum HOM05D004700 ORTHO05D005576 4.2e-96 355.5 322 60.9
Gohir.D11G302900 Gossypium hirsutum HOM05D004700 ORTHO05D005576 4.2e-96 355.5 319 59.6
CANSAT56G3173 Cannabis sativa HOM05D004700 ORTHO05D005576 5.5e-96 355.1 323 58.5
CsaV3_4G008200 Cucumis sativus L. HOM05D004700 ORTHO05D005576 7.1e-96 354.8 319 66.5
Manes.03G079300 Manihot esculenta HOM05D004700 ORTHO05D005576 7.1e-96 354.8 319 67.4
Gohir.A11G289500 Gossypium hirsutum HOM05D004700 ORTHO05D005576 1.2e-95 354.0 319 59.2
Gorai.007G331800 Gossypium raimondii HOM05D004700 ORTHO05D005576 2.1e-95 353.2 319 59.9
Rhsim06G0211800 Rhododendron simsii HOM05D004700 ORTHO05D005576 2.7e-95 352.8 327 68.8
Potri.001G383900 Populus trichocarpa HOM05D004700 ORTHO05D005576 4.6e-95 352.1 323 67.8
SGA_v2.0_scaffold181G39765 Striga asiatica HOM05D004700 ORTHO05D005576 6.0e-95 351.7 320 65.9
BolC3t21472H Brassica oleracea HOM05D004700 ORTHO05D005576 7.9e-95 351.3 321 58.9
BcaC01g01394 Brassica carinata HOM05D004700 ORTHO05D005576 1.8e-94 350.1 320 58.8
C03p91550 Brassica napus HOM05D004700 ORTHO05D005576 1.8e-94 350.1 321 58.9
Duzib213G0278 Durio zibethinus HOM05D004700 ORTHO05D005576 6.7e-94 348.2 320 67.2
PGR031G0266 Punica granatum HOM05D004700 ORTHO05D005576 1.1e-93 347.4 318 66.7
CARHR043720 Cardamine hirsuta HOM05D004700 ORTHO05D005576 5.7e-93 345.1 322 59.3
Sopen08g005940 Solanum pennellii HOM05D004700 ORTHO05D005576 1.6e-92 343.6 318 67.6
BcaC08g43535 Brassica carinata HOM05D004700 ORTHO05D005576 2.8e-92 342.8 328 63.7
MD03G1247600 Malus domestica HOM05D004700 ORTHO05D005576 4.8e-92 342.0 319 64.3
Nitab4.5_0000348g0050 Nicotiana tabacum HOM05D004700 ORTHO05D005576 4.8e-92 342.0 319 66.8
A05p18220 Brassica napus HOM05D004700 ORTHO05D005576 2.4e-91 339.7 321 57.3
Lj1A824T63 Lonicera japonica HOM05D004700 ORTHO05D005576 9.0e-91 337.8 296 69.3
Hund08843 Selenicereus undatus HOM05D004700 ORTHO05D005576 1.2e-90 337.4 319 65.8
Zm00001eb239370 Zea mays HOM05D004700 ORTHO05D005576 2.0e-90 336.7 318 56.3
TAR624G0400 Trochodendron aralioides HOM05D004700 ORTHO05D005576 1.7e-89 333.6 293 71.0
BcaB07g33326 Brassica carinata HOM05D004700 ORTHO05D005576 2.5e-88 329.7 321 54.8
Ca_22302_v3 Cicer arietinum L. HOM05D004700 ORTHO05D005576 4.2e-88 328.9 319 54.5
BcaB02g10917 Brassica carinata HOM05D004700 ORTHO05D005576 9.3e-88 327.8 321 62.6
Psat4g157000 Pisum sativum HOM05D004700 ORTHO05D005576 4.6e-87 325.5 318 55.3
arahy.Tifrunner.gnm1.ann1.7PP38G Arachis hypogaea HOM05D004700 ORTHO05D005576 1.8e-86 323.6 266 71.4
Sabra16G0252900 Salix brachista HOM05D004700 ORTHO05D005576 1.8e-86 323.6 351 60.7
Aqoxy1G01902 Aquilegia oxysepala HOM05D004700 ORTHO05D005576 3.9e-86 322.4 215 85.1
A06p00990 Brassica napus HOM05D004700 ORTHO05D005576 3.3e-85 319.3 365 54.8
BraA06t23327Z Brassica rapa HOM05D004700 ORTHO05D005576 3.3e-85 319.3 365 54.8
Sc03g0010710 Simmondsia chinensis HOM05D004700 ORTHO05D005576 2.2e-84 316.6 295 68.5
unitig_746.g26835 Utricularia gibba HOM05D004700 ORTHO05D005576 4.8e-84 315.5 349 52.4
arahy.Tifrunner.gnm1.ann1.DP9AR5 Arachis hypogaea HOM05D004700 ORTHO05D005576 1.8e-83 313.5 275 68.4
FAN11G3801 Fragaria x ananassa HOM05D004700 ORTHO05D005576 1.8e-83 313.5 329 59.9
Solyc08g015770.4 Solanum lycopersicum HOM05D004700 ORTHO05D005576 2.0e-82 310.1 293 68.9
FAN16G2451 Fragaria x ananassa HOM05D004700 ORTHO05D005576 2.6e-82 309.7 329 59.3
Sed0005766 Sechium edule HOM05D004700 ORTHO05D005576 1.3e-81 307.4 211 82.9
RcHm_v2.0_Chr5g0029521 Rosa chinensis HOM05D004700 ORTHO05D005576 1.7e-81 307.0 318 61.6
Dinv26707 Davidia involucrata HOM05D004700 ORTHO05D005576 2.2e-81 306.6 318 63.2
C06p09250 Brassica napus HOM05D004700 ORTHO05D005576 2.5e-80 303.1 359 56.3
BolC6t36002H Brassica oleracea HOM05D004700 ORTHO05D005576 2.5e-80 303.1 359 56.3
RhsimUnG0206700 Rhododendron simsii HOM05D004700 ORTHO05D005576 9.4e-80 301.2 325 62.5
FvH4_3g17740 Fragaria vesca HOM05D004700 ORTHO05D005576 1.6e-79 300.4 318 61.3
BraA08t32205Z Brassica rapa HOM05D004700 ORTHO05D005576 2.1e-79 300.1 321 52.6
VMungo1127G0687 Vigna mungo HOM05D004700 ORTHO05D005576 1.1e-77 294.3 271 58.3
Nitab4.5_0012258g0020 Nicotiana tabacum HOM05D004700 ORTHO05D005576 4.3e-77 292.4 292 65.8
Sabra11G0076400 Salix brachista HOM05D004700 ORTHO05D005576 5.7e-77 292.0 277 68.6
BraA08t32208Z Brassica rapa HOM05D004700 ORTHO05D005576 1.1e-75 287.7 321 51.7
MD11G1269900 Malus domestica HOM05D004700 ORTHO05D005576 1.0e-73 281.2 335 54.9
CSS0037390 Camellia sinensis var. sinensis HOM05D004700 ORTHO05D005576 4.2e-72 275.8 269 66.9
CSS0048020 Camellia sinensis var. sinensis HOM05D004700 ORTHO05D005576 5.5e-72 275.4 269 67.7
Nitab4.5_0000092g0360 Nicotiana tabacum HOM05D004700 ORTHO05D005576 3.6e-71 272.7 275 56.4
CDE06G2539 Ceratophyllum demersum HOM05D004700 ORTHO05D005576 2.2e-68 263.5 256 69.1
Cfa019516 Carpinus fangiana HOM05D004700 ORTHO05D005576 1.8e-67 260.4 256 68.4
Dinv13363 Davidia involucrata HOM05D004700 ORTHO05D005576 4.1e-67 259.2 193 81.3
ClCG07G010130 Citrullus lanatus HOM05D004700 ORTHO05D005576 9.1e-67 258.1 285 51.9
Sabra11G0075900 Salix brachista HOM05D004700 ORTHO05D005576 1.0e-65 254.6 212 74.1
Lsat_1_v5_gn_7_101801 Lactuca sativa HOM05D004700 ORTHO05D005576 6.5e-65 251.9 301 50.5
BcaB04g17077 Brassica carinata HOM05D004700 ORTHO05D005576 1.2e-63 247.7 311 47.6
Peaxi162Scf00111g01325 Petunia axillaris HOM05D004700 ORTHO05D005576 3.6e-63 246.1 256 57.0
BraA05t20718Z Brassica rapa HOM05D004700 ORTHO05D005576 3.7e-60 236.1 136 79.4
AUR62019650 Chenopodium quinoa HOM05D004700 ORTHO05D005576 1.1e-59 234.6 244 66.4
COL.COLO4_17473 Corchorus olitorius HOM05D004700 ORTHO05D005576 1.1e-59 234.6 247 55.5
AUR62039578 Chenopodium quinoa HOM05D004700 ORTHO05D005576 1.8e-59 233.8 244 66.8
Ah.06g187700 Amaranthus hybridus HOM05D004700 ORTHO05D005576 1.2e-58 231.1 244 67.2
MSTRG.12860 Avicennia marina HOM05D004700 ORTHO05D005576 5.9e-58 228.8 248 54.8
Cpa.g.sc77.62 Carica papaya HOM05D004700 ORTHO05D005576 2.2e-57 226.9 246 54.9
DCAR_021040 Daucus carota HOM05D004700 ORTHO05D005576 2.9e-57 226.5 246 66.3
PGSC0003DMG400013718 Solanum tuberosum HOM05D004700 ORTHO05D005576 1.1e-56 224.6 244 66.8
Peaxi162Scf00000g00759 Petunia axillaris HOM05D004700 ORTHO05D005576 2.4e-51 206.8 245 64.5
Ah.04g164030 Amaranthus hybridus HOM05D004700 ORTHO05D005576 3.1e-51 206.5 244 61.9
BcaC08g44093 Brassica carinata HOM05D004700 ORTHO05D005576 8.0e-47 191.8 255 49.0
C06p14980 Brassica napus HOM05D004700 ORTHO05D005576 7.5e-45 185.3 247 47.8
BolC6t36675H Brassica oleracea HOM05D004700 ORTHO05D005576 7.5e-45 185.3 247 47.8
Mapoly0001s0250 Marchantia polymorpha HOM05D004700 ORTHO05D005576 1.3e-44 184.5 330 45.2
Sabra11G0075500 Salix brachista HOM05D004700 ORTHO05D005576 8.3e-44 181.8 147 83.7
AagrBONN_evm.TU.Sc2ySwM_362.885 Anthoceros agrestis HOM05D004700 ORTHO05D005576 1.1e-43 181.4 234 53.8
Pp3c8_15890 Physcomitrium patens HOM05D004700 ORTHO05D005576 3.1e-43 179.9 330 38.2
Sc07g0002390 Simmondsia chinensis HOM05D004700 ORTHO05D005576 3.1e-43 179.9 145 75.2
CDE02G3773 Ceratophyllum demersum HOM05D004700 ORTHO05D005576 2.0e-42 177.2 296 41.2
Oeu010032.1 Olea europaea HOM05D004700 ORTHO05D005576 5.9e-42 175.6 300 41.0
Sabra11G0076300 Salix brachista HOM05D004700 ORTHO05D005576 8.6e-41 171.8 171 54.4
Gorai.002G047100 Gossypium raimondii HOM05D004700 ORTHO05D005576 1.5e-40 171.0 243 52.3
FAN25G1946 Fragaria x ananassa HOM05D004700 ORTHO05D005576 4.3e-40 169.5 255 54.1
SEGI_00597 Sequoiadendron giganteum HOM05D004700 ORTHO05D005576 8.0e-39 165.2 254 45.7
Actinidia04619 Actinidia chinensis HOM05D004700 ORTHO05D005576 1.2e-34 151.4 74 89.2
Sabra11G0075300 Salix brachista HOM05D004700 ORTHO05D005576 9.5e-32 141.7 165 52.1
Zm00001eb164550 Zea mays HOM05D004700 ORTHO05D005576 7.5e-29 132.1 73 74.0
Ah.06g187690 Amaranthus hybridus HOM05D004700 ORTHO05D000031 4.9e-28 129.4 73 75.3
Gohir.D01G038350 Gossypium hirsutum HOM05D004700 ORTHO05D005576 3.2e-27 126.7 160 63.8
Actinidia04620 Actinidia chinensis HOM05D004700 ORTHO05D005576 4.7e-23 112.8 179 42.5
Zm00001eb046150 Zea mays HOM05D004700 ORTHO05D005576 8.9e-22 108.6 63 68.3
Aqoxy1G01901 Aquilegia oxysepala HOM05D004700 ORTHO05D005576 1.6e-18 97.8 101 55.4
Zm00001eb337320 Zea mays HOM05D004700 ORTHO05D005576 3.5e-18 96.7 145 39.3
Cre03.g161500 Chlamydomonas reinhardtii HOM05D004700 ORTHO05D005576 1.3e-17 94.7 132 33.3
Zm00001eb352830 Zea mays HOM05D004700 ORTHO05D005576 6.6e-17 92.4 50 72.0
Zm00001eb364990 Zea mays HOM05D001185 ORTHO05D005576 2.1e-15 87.4 133 42.9
Lsat_1_v5_gn_6_80301 Lactuca sativa HOM05D003665 ORTHO05D004387 1.9e-11 74.3 52 71.2
Lsat_1_v5_gn_8_31621 Lactuca sativa HOM05D003665 ORTHO05D004387 1.9e-11 74.3 52 71.2
Sc07g0002380 Simmondsia chinensis HOM05D004700 ORTHO05D005576 2.5e-08 63.9 116 39.7
Peaxi162Scf00000g00758 Petunia axillaris HOM05D004700 ORTHO05D005576 3.3e-08 63.5 100 39.0


User provided reference genes

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