Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0602G038 Amborella trichopoda HOM05D004704 ORTHO05D005384 1.5e-306 1055.4 552 100.0
MBI06_g18005_MAGBIO Magnolia biondii HOM05D004704 ORTHO05D005384 1.2e-207 726.9 556 66.0
ECA236G1293 Erigeron canadensis HOM05D004704 ORTHO05D005384 2.6e-202 709.1 551 65.3
TAR629G2327 Trochodendron aralioides HOM05D004704 ORTHO05D005384 1.7e-201 706.4 548 64.4
COL.COLO4_31331 Corchorus olitorius HOM05D004704 ORTHO05D005384 3.7e-201 705.3 554 64.3
TAR629G2609 Trochodendron aralioides HOM05D004704 ORTHO05D005384 6.4e-201 704.5 548 64.4
TAR627G0020 Trochodendron aralioides HOM05D004704 ORTHO05D005384 1.8e-200 703.0 546 64.8
TAR706G0003 Trochodendron aralioides HOM05D004704 ORTHO05D005384 1.8e-200 703.0 546 64.8
Nn1g04361 Nelumbo nucifera HOM05D004704 ORTHO05D005384 2.4e-200 702.6 563 63.6
Manes.17G053900 Manihot esculenta HOM05D004704 ORTHO05D005384 7.0e-200 701.0 556 65.1
Lsat_1_v5_gn_7_23201 Lactuca sativa HOM05D004704 ORTHO05D005384 9.2e-200 700.7 549 65.2
Aqoxy1G03204 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 1.6e-199 699.9 553 64.6
PGR004G2343 Punica granatum HOM05D004704 ORTHO05D005384 1.6e-199 699.9 558 64.2
MBI06_g18007_MAGBIO Magnolia biondii HOM05D004704 ORTHO05D005384 1.0e-198 697.2 556 62.9
Sabra11G0046100 Salix brachista HOM05D004704 ORTHO05D005384 1.3e-198 696.8 552 64.9
Thecc.06G174000 Theobroma cacao HOM05D004704 ORTHO05D005384 1.1e-197 693.7 559 62.8
DCAR_028021 Daucus carota HOM05D004704 ORTHO05D005384 2.5e-197 692.6 560 64.1
Potri.011G064300 Populus trichocarpa HOM05D004704 ORTHO05D005384 3.3e-197 692.2 552 64.9
CsaV3_6G050770 Cucumis sativus L. HOM05D004704 ORTHO05D005384 4.3e-197 691.8 561 64.7
Gorai.010G156000 Gossypium raimondii HOM05D004704 ORTHO05D005384 4.7e-196 688.3 555 63.8
Cc02_g14600 Coffea canephora HOM05D004704 ORTHO05D005384 6.2e-196 688.0 553 62.6
Glyma.13G231200 Glycine max HOM05D004704 ORTHO05D005384 6.2e-196 688.0 558 64.5
PGR004G2271 Punica granatum HOM05D004704 ORTHO05D005384 6.2e-196 688.0 557 63.2
Potri.004G054500 Populus trichocarpa HOM05D004704 ORTHO05D005384 1.8e-195 686.4 550 62.9
TWI38G0698 Tripterygium wilfordii HOM05D004704 ORTHO05D005384 1.8e-195 686.4 554 63.4
HanXRQChr04g0115831 Helianthus annuus HOM05D004704 ORTHO05D005384 4.0e-195 685.3 551 63.2
Nitab4.5_0002076g0080 Nicotiana tabacum HOM05D004704 ORTHO05D005384 5.2e-195 684.9 566 61.8
CiPaw.09G067800 Carya illinoinensis HOM05D004704 ORTHO05D005384 6.8e-195 684.5 551 63.9
Gohir.D06G134300 Gossypium hirsutum HOM05D004704 ORTHO05D005384 6.8e-195 684.5 555 63.6
Peaxi162Scf00200g00121 Petunia axillaris HOM05D004704 ORTHO05D005384 1.2e-194 683.7 567 61.4
Cfa000584 Carpinus fangiana HOM05D004704 ORTHO05D005384 4.4e-194 681.8 547 64.2
CiPaw.09G067900 Carya illinoinensis HOM05D004704 ORTHO05D005384 2.2e-193 679.5 552 67.0
DCAR_004019 Daucus carota HOM05D004704 ORTHO05D005384 2.9e-193 679.1 556 61.7
Eucgr.D00532 Eucalyptus grandis HOM05D004704 ORTHO05D005384 3.7e-193 678.7 563 62.9
DCAR_004020 Daucus carota HOM05D004704 ORTHO05D005384 9.2e-192 674.1 561 60.2
Sabra04G0035600 Salix brachista HOM05D004704 ORTHO05D005384 4.6e-191 671.8 550 62.0
Migut.M01052 Erythranthe guttata HOM05D004704 ORTHO05D005384 6.0e-191 671.4 570 61.9
A03p51400 Brassica napus HOM05D004704 ORTHO05D005384 1.7e-190 669.8 576 62.3
ClCG01G023620 Citrullus lanatus HOM05D004704 ORTHO05D005384 2.3e-190 669.5 547 62.7
BcaNung02719 Brassica carinata HOM05D004704 ORTHO05D005384 3.9e-190 668.7 576 62.2
C07p49820 Brassica napus HOM05D004704 ORTHO05D005384 3.9e-190 668.7 576 62.2
BolC7t45484H Brassica oleracea HOM05D004704 ORTHO05D005384 3.9e-190 668.7 576 62.2
PSO063G2883 Papaver somniferum HOM05D004704 ORTHO05D005384 3.9e-190 668.7 568 60.0
Thhalv10024794m.g Eutrema salsugineum HOM05D004704 ORTHO05D005384 1.1e-189 667.2 574 60.8
BcaC06g30574 Brassica carinata HOM05D004704 ORTHO05D005384 2.5e-189 666.0 576 62.0
A01p10560 Brassica napus HOM05D004704 ORTHO05D005384 2.5e-189 666.0 554 65.2
arahy.Tifrunner.gnm1.ann1.IMTX5S Arachis hypogaea HOM05D004704 ORTHO05D005384 5.6e-189 664.8 549 64.8
CARHR225390 Cardamine hirsuta HOM05D004704 ORTHO05D005384 5.6e-189 664.8 577 64.1
MELO3C007223.2 Cucumis melo HOM05D004704 ORTHO05D005384 1.2e-188 663.7 554 63.0
Sed0013784 Sechium edule HOM05D004704 ORTHO05D005384 1.6e-188 663.3 544 63.2
C01p12500 Brassica napus HOM05D004704 ORTHO05D005384 2.1e-188 662.9 554 65.0
BcaC09g51493 Brassica carinata HOM05D004704 ORTHO05D005384 2.8e-188 662.5 552 65.0
BraA01t01002Z Brassica rapa HOM05D004704 ORTHO05D005384 2.8e-188 662.5 554 65.0
Eucgr.D00531 Eucalyptus grandis HOM05D004704 ORTHO05D005384 3.6e-188 662.1 555 60.9
BolC1t01223H Brassica oleracea HOM05D004704 ORTHO05D005384 4.7e-188 661.8 554 64.8
Aqoxy4G00468 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 6.2e-188 661.4 552 60.5
SalBow8G1161 Salvia bowleyana HOM05D004704 ORTHO05D005384 1.4e-187 660.2 489 66.1
arahy.Tifrunner.gnm1.ann1.7UF87C Arachis hypogaea HOM05D004704 ORTHO05D005384 3.1e-187 659.1 548 64.2
BraA08t33364Z Brassica rapa HOM05D004704 ORTHO05D005384 1.2e-186 657.1 573 60.9
AL7G35740 Arabidopsis lyrata HOM05D004704 ORTHO05D005384 1.7e-185 653.3 576 61.6
A08p13850 Brassica napus HOM05D004704 ORTHO05D005384 1.7e-185 653.3 576 60.2
BcaB04g18480 Brassica carinata HOM05D004704 ORTHO05D005384 6.4e-185 651.4 567 60.8
BcaNung03813 Brassica carinata HOM05D004704 ORTHO05D005384 6.4e-185 651.4 554 63.9
Carub.0007s2269 Capsella rubella HOM05D004704 ORTHO05D005384 6.4e-185 651.4 569 59.8
Sp7g15490 Schrenkiella parvula HOM05D004704 ORTHO05D005384 1.1e-184 650.6 577 59.3
PGSC0003DMG400004386 Solanum tuberosum HOM05D004704 ORTHO05D005384 1.1e-184 650.6 559 61.4
Lj3g0017096 Lotus japonicus HOM05D004704 ORTHO05D005384 3.2e-184 649.0 551 60.8
QL05p046090 Quercus lobata HOM05D004704 ORTHO05D005384 4.1e-184 648.7 551 58.6
Solyc03g006230.1 Solanum lycopersicum HOM05D004704 ORTHO05D005384 4.1e-184 648.7 567 58.4
Nitab4.5_0001375g0020 Nicotiana tabacum HOM05D004704 ORTHO05D005384 5.4e-184 648.3 549 60.3
Aa31LG6G1280 Aethionema arabicum HOM05D004704 ORTHO05D005384 7.1e-184 647.9 585 57.4
CAN.G2115.3 Capsicum annuum HOM05D004704 ORTHO05D005384 1.6e-183 646.7 565 59.8
PGSC0003DMG400018011 Solanum tuberosum HOM05D004704 ORTHO05D005384 1.6e-183 646.7 562 59.4
Thhalv10023013m.g Eutrema salsugineum HOM05D004704 ORTHO05D005384 2.1e-183 646.4 566 61.7
VMungo1080G1587 Vigna mungo HOM05D004704 ORTHO05D005384 2.1e-183 646.4 564 59.0
Manes.17G053800 Manihot esculenta HOM05D004704 ORTHO05D005384 5.1e-182 641.7 551 59.7
Medtr2g091155 Medicago truncatula HOM05D004704 ORTHO05D005384 5.1e-182 641.7 548 59.5
Psat5g275720 Pisum sativum HOM05D004704 ORTHO05D005384 1.5e-181 640.2 551 60.1
Phvul.005G096400 Phaseolus vulgaris HOM05D004704 ORTHO05D005384 2.5e-181 639.4 564 59.2
QL05p045074 Quercus lobata HOM05D004704 ORTHO05D005384 2.5e-181 639.4 551 58.1
CSS0042475 Camellia sinensis var. sinensis HOM05D004704 ORTHO05D005384 3.3e-181 639.0 556 61.2
Glyma.13G291900 Glycine max HOM05D004704 ORTHO05D005384 7.3e-181 637.9 561 59.7
Glyma.12G209400 Glycine max HOM05D004704 ORTHO05D005384 1.6e-180 636.7 552 59.4
Medtr2g091165 Medicago truncatula HOM05D004704 ORTHO05D005384 4.7e-180 635.2 551 58.6
SGA_v2.0_scaffold1G00019 Striga asiatica HOM05D004704 ORTHO05D005384 1.1e-179 634.0 565 61.6
Duzib192G0914 Durio zibethinus HOM05D004704 ORTHO05D005384 5.2e-179 631.7 563 59.3
Lalb_Chr24g0400061 Lupinus albus HOM05D004704 ORTHO05D005384 6.8e-179 631.3 551 59.5
Rhsim13G0106100 Rhododendron simsii HOM05D004704 ORTHO05D005384 8.9e-179 630.9 561 58.8
unitig_578.g16444 Utricularia gibba HOM05D004704 ORTHO05D005384 8.9e-179 630.9 556 58.1
BraA03t14222Z Brassica rapa HOM05D004704 ORTHO05D005384 7.6e-178 627.9 574 58.4
Zm00001eb161990 Zea mays HOM05D004704 ORTHO05D005384 4.9e-177 625.2 569 56.4
BcaC09g51492 Brassica carinata HOM05D004704 ORTHO05D005384 1.4e-176 623.6 561 58.1
MBI06_g45390_MAGBIO Magnolia biondii HOM05D004704 ORTHO05D005384 1.4e-176 623.6 401 74.8
Dinv04632 Davidia involucrata HOM05D004704 ORTHO05D005384 7.1e-176 621.3 431 69.8
SGA_v2.0_scaffold1G00026 Striga asiatica HOM05D004704 ORTHO05D005384 1.3e-174 617.1 559 60.6
Rhsim13G0106000 Rhododendron simsii HOM05D004704 ORTHO05D005384 5.1e-174 615.1 582 56.4
BcaC01g00546 Brassica carinata HOM05D004704 ORTHO05D005384 6.6e-174 614.8 572 58.4
Aqoxy4G00469 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 1.1e-173 614.0 452 65.9
DCAR_013058 Daucus carota HOM05D004704 ORTHO05D005384 1.2e-170 604.0 548 56.4
Lalb_Chr14g0367381 Lupinus albus HOM05D004704 ORTHO05D005384 6.4e-169 598.2 546 57.1
SGA_v2.0_scaffold1G00021 Striga asiatica HOM05D004704 ORTHO05D005384 6.4e-169 598.2 561 57.4
PSO782G0987 Papaver somniferum HOM05D004704 ORTHO05D005384 6.0e-167 591.7 568 55.5
C03p81280 Brassica napus HOM05D004704 ORTHO05D005384 6.6e-166 588.2 536 59.3
Lj1P1195T10 Lonicera japonica HOM05D004704 ORTHO05D005384 7.3e-165 584.7 429 66.4
BcaNung03810 Brassica carinata HOM05D004704 ORTHO05D005384 4.8e-164 582.0 402 69.9
Lalb_Chr20g0121271 Lupinus albus HOM05D004704 ORTHO05D005384 1.4e-163 580.5 448 63.4
Os01g0613100 Oryza sativa ssp. japonica HOM05D004704 ORTHO05D005384 9.0e-163 577.8 586 56.3
Oeu041796.1 Olea europaea HOM05D004704 ORTHO05D005384 1.3e-161 573.9 562 56.9
Oeu041801.1 Olea europaea HOM05D004704 ORTHO05D005384 1.3e-161 573.9 559 56.2
PSO063G6793 Papaver somniferum HOM05D004704 ORTHO05D005384 4.9e-161 572.0 563 54.9
QL04p061454 Quercus lobata HOM05D004704 ORTHO05D005384 2.4e-160 569.7 556 56.1
BolC3t20394H Brassica oleracea HOM05D004704 ORTHO05D005384 5.4e-160 568.5 383 69.7
Oeu062343.1 Olea europaea HOM05D004704 ORTHO05D005384 1.6e-159 567.0 562 55.3
TAR627G1005 Trochodendron aralioides HOM05D004704 ORTHO05D005384 1.0e-158 564.3 546 55.3
Ca_01465_v3 Cicer arietinum L. HOM05D004704 ORTHO05D005384 2.5e-157 559.7 560 54.3
CSS0042208 Camellia sinensis var. sinensis HOM05D004704 ORTHO05D005384 8.4e-153 544.7 564 53.9
TPR.G11553 Trifolium pratense HOM05D004704 ORTHO05D005384 1.9e-149 533.5 552 52.7
Oeu041804.1 Olea europaea HOM05D004704 ORTHO05D005384 2.6e-146 523.1 337 73.6
Sopen03g002240 Solanum pennellii HOM05D004704 ORTHO05D005384 1.0e-145 521.2 560 51.2
CDE02G3156 Ceratophyllum demersum HOM05D004704 ORTHO05D005384 1.0e-142 511.1 517 51.6
Oeu012062.1 Olea europaea HOM05D004704 ORTHO05D005384 1.0e-137 494.6 562 50.9
Rhsim13G0186500 Rhododendron simsii HOM05D004704 ORTHO05D005384 4.2e-136 489.2 538 50.0
GSVIVG01021187001 Vitis vinifera HOM05D004704 ORTHO05D005384 1.9e-133 480.3 549 51.4
SalBow8G4518 Salvia bowleyana HOM05D004704 ORTHO05D005384 1.8e-131 473.8 301 74.4
Pp3c12_12860 Physcomitrium patens HOM05D004704 ORTHO05D005384 5.3e-123 445.7 454 47.4
AT4G18540 Arabidopsis thaliana HOM05D004704 ORTHO05D005384 1.4e-120 437.6 475 56.8
PSO782G0854 Papaver somniferum HOM05D004704 ORTHO05D005384 1.7e-105 387.5 395 53.7
Pp3c12_12910 Physcomitrium patens HOM05D004704 ORTHO05D005384 4.5e-98 362.8 389 45.5
GSVIVG01021186001 Vitis vinifera HOM05D004704 ORTHO05D000303 2.2e-84 317.4 519 40.3
Duzib235G1356 Durio zibethinus HOM05D004704 ORTHO05D005384 1.1e-83 315.1 310 57.7
TAR627G0576 Trochodendron aralioides HOM05D004704 ORTHO05D005384 4.6e-82 309.7 286 55.2
Sabra11G0045900 Salix brachista HOM05D004704 ORTHO05D005384 5.0e-81 306.2 197 72.6
Solyc02g032600.1 Solanum lycopersicum HOM05D004704 ORTHO05D005384 1.1e-80 305.1 376 46.0
Rhsim13G0105800 Rhododendron simsii HOM05D004704 ORTHO05D005384 4.9e-76 289.7 358 45.5
Aqoxy1G03203 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 1.9e-72 277.7 206 62.6
TAR627G1161 Trochodendron aralioides HOM05D004704 ORTHO05D005384 1.4e-62 245.0 155 72.9
SGA_v2.0_scaffold1G00016 Striga asiatica HOM05D004704 ORTHO05D005384 1.4e-51 208.4 190 58.4
Lj1C1195T2 Lonicera japonica HOM05D004704 ORTHO05D005384 6.7e-41 172.9 266 43.2
SalBow2G1262 Salvia bowleyana HOM05D004704 ORTHO05D005384 1.1e-40 172.2 173 50.9
Sabra11G0046000 Salix brachista HOM05D004704 ORTHO05D005384 1.6e-39 168.3 228 46.1
SEGI_01061 Sequoiadendron giganteum HOM05D004704 ORTHO05D005384 4.0e-38 163.7 274 38.7
SMO351G0588 Selaginella moellendorffii HOM05D020388 ORTHO05D005384 4.2e-35 153.7 434 28.1
arahy.Tifrunner.gnm1.ann1.EBKJ9L Arachis hypogaea HOM05D004704 ORTHO05D005384 2.0e-29 134.8 91 68.1
arahy.Tifrunner.gnm1.ann1.UG6603 Arachis hypogaea HOM05D004704 ORTHO05D005384 1.7e-28 131.7 91 67.0
COL.COLO4_31332 Corchorus olitorius HOM05D004704 ORTHO05D005384 1.1e-22 112.5 79 63.3
Rhsim06G0194600 Rhododendron simsii HOM05D000067 ORTHO05D005384 1.6e-18 98.6 115 42.6
arahy.Tifrunner.gnm1.ann1.E2ZA7R Arachis hypogaea HOM05D004704 ORTHO05D005384 1.0e-17 95.9 69 63.8
Nitab4.5_0008860g0010 Nicotiana tabacum HOM05D004704 ORTHO05D005384 1.3e-17 95.5 150 40.7
Cfa023998 Carpinus fangiana HOM05D004704 ORTHO05D005384 3.0e-17 94.4 180 31.1
arahy.Tifrunner.gnm1.ann1.96JZXU Arachis hypogaea HOM05D004704 ORTHO05D005384 3.9e-17 94.0 69 62.3
arahy.Tifrunner.gnm1.ann1.V1RFD3 Arachis hypogaea HOM05D004704 ORTHO05D005384 1.9e-16 91.7 69 62.3
arahy.Tifrunner.gnm1.ann1.ESA3XA Arachis hypogaea HOM05D004704 ORTHO05D005384 1.4e-14 85.5 58 67.2
Rhsim06G0194700 Rhododendron simsii HOM05D000067 ORTHO05D000097 5.9e-13 80.1 73 50.7
Nitab4.5_0008860g0020 Nicotiana tabacum HOM05D004704 ORTHO05D005384 3.3e-08 64.3 86 43.0
SEGI_32787 Sequoiadendron giganteum HOM05D002370 ORTHO05D003878 5.7e-08 63.5 50 62.0
SEGI_17553 Sequoiadendron giganteum HOM05D004704 ORTHO05D005384 7.4e-08 63.2 123 34.1


User provided reference genes

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