Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0602G017 Amborella trichopoda HOM05D004576 ORTHO05D005321 5.1e-63 244.2 120 100.0
ATR0763G025 Amborella trichopoda HOM05D004576 ORTHO05D005321 5.5e-33 144.4 106 68.9
HPP92_010727 Vanilla planifolia HOM05D004576 ORTHO05D005321 1.3e-29 133.3 106 64.2
Nn1g00276 Nelumbo nucifera HOM05D004576 ORTHO05D005321 4.1e-28 128.3 95 65.3
Hund11655 Selenicereus undatus HOM05D004576 ORTHO05D005321 5.3e-28 127.9 106 59.4
MBI06_g10867_MAGBIO Magnolia biondii HOM05D004576 ORTHO05D005321 7.0e-28 127.5 115 57.4
Ah.07g205540 Amaranthus hybridus HOM05D004576 ORTHO05D005321 1.2e-27 126.7 103 59.2
AUR62006083 Chenopodium quinoa HOM05D004576 ORTHO05D005321 2.0e-27 125.9 105 59.0
THA.LOC104799972 Tarenaya hassleriana HOM05D004576 ORTHO05D005321 4.5e-27 124.8 105 58.1
TAR633G0881 Trochodendron aralioides HOM05D004576 ORTHO05D005321 4.5e-27 124.8 95 64.2
VMungo1309G0981 Vigna mungo HOM05D005525 ORTHO05D005321 4.5e-27 124.8 95 63.2
arahy.Tifrunner.gnm1.ann1.EHU7FT Arachis hypogaea HOM05D004576 ORTHO05D005321 5.9e-27 124.4 105 59.0
arahy.Tifrunner.gnm1.ann1.S03LBS Arachis hypogaea HOM05D004576 ORTHO05D005321 5.9e-27 124.4 105 59.0
AUR62019411 Chenopodium quinoa HOM05D004576 ORTHO05D005321 5.9e-27 124.4 105 58.1
ECA238G3082 Erigeron canadensis HOM05D004576 ORTHO05D005321 5.9e-27 124.4 105 57.1
Os12g0137500 Oryza sativa ssp. japonica HOM05D004576 ORTHO05D005321 5.9e-27 124.4 100 60.0
HanXRQChr07g0206441 Helianthus annuus HOM05D004576 ORTHO05D005321 1.0e-26 123.6 105 57.1
CAN.G140.19 Capsicum annuum HOM05D004576 ORTHO05D005321 1.7e-26 122.9 95 63.2
Ca_16714_v3 Cicer arietinum L. HOM05D004576 ORTHO05D005321 1.7e-26 122.9 105 58.1
Eucgr.A01454 Eucalyptus grandis HOM05D004576 ORTHO05D005321 1.7e-26 122.9 105 57.1
Lj3C903T12 Lonicera japonica HOM05D004576 ORTHO05D005321 1.7e-26 122.9 105 57.1
Sed0009575 Sechium edule HOM05D004576 ORTHO05D005321 1.7e-26 122.9 103 58.3
TAR629G2734 Trochodendron aralioides HOM05D004576 ORTHO05D005321 1.7e-26 122.9 95 62.1
Zm00001eb196410 Zea mays HOM05D004576 ORTHO05D005321 1.7e-26 122.9 98 60.2
Lalb_Chr11g0066931 Lupinus albus HOM05D004576 ORTHO05D005321 2.2e-26 122.5 105 59.0
ClCG09G018570 Citrullus lanatus HOM05D004576 ORTHO05D005321 2.9e-26 122.1 105 57.1
Sc25g0000910 Simmondsia chinensis HOM05D004576 ORTHO05D005321 2.9e-26 122.1 105 57.1
SGA_v2.0_scaffold192G40533 Striga asiatica HOM05D004576 ORTHO05D005321 2.9e-26 122.1 95 62.1
CiPaw.06G045600 Carya illinoinensis HOM05D004576 ORTHO05D005321 3.8e-26 121.7 105 56.2
Aa31LG9G16760 Aethionema arabicum HOM05D004576 ORTHO05D005321 5.0e-26 121.3 105 56.2
Hma1.2p1_0404F.1_g145290 Hydrangea macrophylla HOM05D004576 ORTHO05D005321 5.0e-26 121.3 103 58.3
Hma1.2p1_1587F.1_g292290 Hydrangea macrophylla HOM05D004576 ORTHO05D005321 5.0e-26 121.3 103 58.3
MD07G1287100 Malus domestica HOM05D004576 ORTHO05D005321 5.0e-26 121.3 95 62.1
MD07G1287400 Malus domestica HOM05D004576 ORTHO05D005321 5.0e-26 121.3 95 62.1
A10p10480 Brassica napus HOM05D004576 ORTHO05D005321 6.5e-26 120.9 110 52.7
BraA10t43131Z Brassica rapa HOM05D004576 ORTHO05D005321 6.5e-26 120.9 110 52.7
Cpa.g.sc3.95 Carica papaya HOM05D004576 ORTHO05D005321 6.5e-26 120.9 95 62.1
MELO3C021489.2 Cucumis melo HOM05D004576 ORTHO05D005321 6.5e-26 120.9 105 56.2
Medtr1g050518 Medicago truncatula HOM05D004576 ORTHO05D005321 6.5e-26 120.9 105 56.2
Potri.012G016500 Populus trichocarpa HOM05D004576 ORTHO05D005321 6.5e-26 120.9 95 60.0
Zm00001eb093250 Zea mays HOM05D004576 ORTHO05D005321 6.5e-26 120.9 98 58.2
Glyma.04G234900 Glycine max HOM05D004576 ORTHO05D005321 8.5e-26 120.6 95 58.9
Os11g0141000 Oryza sativa ssp. japonica HOM05D004576 ORTHO05D005321 8.5e-26 120.6 74 73.0
Phvul.009G051900 Phaseolus vulgaris HOM05D004576 ORTHO05D005321 8.5e-26 120.6 95 60.0
SalBow4G0465 Salvia bowleyana HOM05D004576 ORTHO05D005321 8.5e-26 120.6 105 55.2
Duzib068G0175 Durio zibethinus HOM05D004576 ORTHO05D005321 1.1e-25 120.2 105 56.2
MD01G1217800 Malus domestica HOM05D004576 ORTHO05D005321 1.1e-25 120.2 105 57.1
Manes.10G051900 Manihot esculenta HOM05D004576 ORTHO05D005321 1.1e-25 120.2 95 61.1
Sed0014456 Sechium edule HOM05D004576 ORTHO05D005321 1.1e-25 120.2 103 57.3
unitig_748.g7294 Utricularia gibba HOM05D004576 ORTHO05D005321 1.1e-25 120.2 105 57.1
C09p42710 Brassica napus HOM05D004576 ORTHO05D005321 1.5e-25 119.8 110 51.8
BolC9t57147H Brassica oleracea HOM05D004576 ORTHO05D005321 1.5e-25 119.8 110 51.8
CsaV3_5G037660 Cucumis sativus L. HOM05D004576 ORTHO05D005321 1.5e-25 119.8 105 55.2
Medtr3g091640 Medicago truncatula HOM05D004576 ORTHO05D005321 1.5e-25 119.8 105 56.2
TPR.G18754 Trifolium pratense HOM05D004576 ORTHO05D005321 1.5e-25 119.8 105 55.2
CSS0008628 Camellia sinensis var. sinensis HOM05D004576 ORTHO05D005321 1.9e-25 119.4 87 65.5
Cfa016237 Carpinus fangiana HOM05D004576 ORTHO05D005321 1.9e-25 119.4 105 55.2
Ciclev10020388m.g Citrus clementina HOM05D004576 ORTHO05D005321 1.9e-25 119.4 95 60.0
Manes.07G095000 Manihot esculenta HOM05D004576 ORTHO05D005321 1.9e-25 119.4 95 58.9
DCAR_020325 Daucus carota HOM05D004576 ORTHO05D005321 2.5e-25 119.0 101 58.4
Gohir.D04G001200 Gossypium hirsutum HOM05D004576 ORTHO05D005321 2.5e-25 119.0 105 55.2
Gorai.012G002200 Gossypium raimondii HOM05D004576 ORTHO05D005321 2.5e-25 119.0 105 55.2
Hma1.2p1_1507F.1_g287630 Hydrangea macrophylla HOM05D004576 ORTHO05D005321 2.5e-25 119.0 105 57.1
Potri.015G012200 Populus trichocarpa HOM05D004576 ORTHO05D005321 2.5e-25 119.0 95 58.9
Solyc01g006110.3 Solanum lycopersicum HOM05D004576 ORTHO05D005321 2.5e-25 119.0 95 60.0
Sopen01g002110 Solanum pennellii HOM05D004576 ORTHO05D005321 2.5e-25 119.0 95 60.0
Actinidia06144 Actinidia chinensis HOM05D004576 ORTHO05D005321 3.2e-25 118.6 84 65.5
CSS0016084 Camellia sinensis var. sinensis HOM05D004576 ORTHO05D005321 3.2e-25 118.6 115 51.3
Dinv35342 Davidia involucrata HOM05D004576 ORTHO05D005321 3.2e-25 118.6 105 56.2
FvH4_7g31380 Fragaria vesca HOM05D004576 ORTHO05D005321 3.2e-25 118.6 95 57.9
FAN01G2495 Fragaria x ananassa HOM05D004576 ORTHO05D005321 3.2e-25 118.6 95 57.9
FAN06G0548 Fragaria x ananassa HOM05D004576 ORTHO05D005321 3.2e-25 118.6 95 57.9
FAN06G1560 Fragaria x ananassa HOM05D004576 ORTHO05D005321 3.2e-25 118.6 95 57.9
Nitab4.5_0005477g0060 Nicotiana tabacum HOM05D004576 ORTHO05D005321 3.2e-25 118.6 95 60.0
Thecc.03G200200 Theobroma cacao HOM05D004576 ORTHO05D005321 3.2e-25 118.6 105 55.2
CAN.G575.13 Capsicum annuum HOM05D004576 ORTHO05D005321 4.2e-25 118.2 105 56.2
CDE02G4477 Ceratophyllum demersum HOM05D004576 ORTHO05D005321 4.2e-25 118.2 110 55.5
Thhalv10013705m.g Eutrema salsugineum HOM05D004576 ORTHO05D005321 4.2e-25 118.2 105 54.3
Lj4g0015379 Lotus japonicus HOM05D004576 ORTHO05D005321 4.2e-25 118.2 105 56.2
Oeu023658.2 Olea europaea HOM05D004576 ORTHO05D005321 4.2e-25 118.2 95 58.9
CANSAT21G1766 Cannabis sativa HOM05D004576 ORTHO05D005321 5.5e-25 117.9 105 54.3
Cc02_g01450 Coffea canephora HOM05D004576 ORTHO05D005321 5.5e-25 117.9 105 54.3
Peaxi162Scf00441g00115 Petunia axillaris HOM05D004576 ORTHO05D005321 5.5e-25 117.9 95 60.0
Psat5g076560 Pisum sativum HOM05D004576 ORTHO05D005321 5.5e-25 117.9 110 52.7
RcHm_v2.0_Chr1g0380451 Rosa chinensis HOM05D004576 ORTHO05D005321 5.5e-25 117.9 95 60.0
Aqoxy7G00528 Aquilegia oxysepala HOM05D004576 ORTHO05D005321 7.2e-25 117.5 95 57.9
PGSC0003DMG400032187 Solanum tuberosum HOM05D004576 ORTHO05D005321 7.2e-25 117.5 95 58.9
MSTRG.27022 Avicennia marina HOM05D004576 ORTHO05D005321 9.4e-25 117.1 105 55.2
Haze_00204 Corylus avellana HOM05D004576 ORTHO05D005321 9.4e-25 117.1 95 57.9
Gohir.A05G415000 Gossypium hirsutum HOM05D004576 ORTHO05D005321 9.4e-25 117.1 105 54.3
PGR042G3016 Punica granatum HOM05D004576 ORTHO05D005321 9.4e-25 117.1 87 63.2
Sp6g15160 Schrenkiella parvula HOM05D004576 ORTHO05D005321 9.4e-25 117.1 105 53.3
AL8G27540 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 1.2e-24 116.7 105 54.3
BcaC04g20518 Brassica carinata HOM05D004576 ORTHO05D005321 1.2e-24 116.7 100 54.0
COL.COLO4_16771 Corchorus olitorius HOM05D004576 ORTHO05D005321 1.2e-24 116.7 95 57.9
Rhsim09G0206100 Rhododendron simsii HOM05D004576 ORTHO05D005321 1.2e-24 116.7 84 65.5
Atru.chr12.2224 Acer truncatum HOM05D004576 ORTHO05D005321 1.6e-24 116.3 95 57.9
FAN03G3343 Fragaria x ananassa HOM05D004576 ORTHO05D005321 1.6e-24 116.3 95 56.8
Nitab4.5_0003555g0040 Nicotiana tabacum HOM05D004576 ORTHO05D005321 1.6e-24 116.3 105 55.2
Sabra15G0009800 Salix brachista HOM05D004576 ORTHO05D005321 1.6e-24 116.3 95 57.9
EL10Ac3g05272 Beta vulgaris HOM05D004576 ORTHO05D005321 2.1e-24 115.9 105 54.3
Migut.F00204 Erythranthe guttata HOM05D004576 ORTHO05D005321 2.1e-24 115.9 105 53.3
vmacro10126 Vaccinium macrocarpon HOM05D004576 ORTHO05D005321 2.1e-24 115.9 84 64.3
Gohir.D12G250200 Gossypium hirsutum HOM05D004576 ORTHO05D005321 4.7e-24 114.8 105 53.3
Gorai.008G268300 Gossypium raimondii HOM05D004576 ORTHO05D005321 4.7e-24 114.8 105 53.3
PSO170G4165 Papaver somniferum HOM05D004576 ORTHO05D005321 4.7e-24 114.8 111 50.5
PSO170G5996 Papaver somniferum HOM05D004576 ORTHO05D005321 4.7e-24 114.8 111 50.5
Prupe.2G309200 Prunus persica HOM05D004576 ORTHO05D005321 4.7e-24 114.8 95 56.8
QL09p008710 Quercus lobata HOM05D004576 ORTHO05D005321 4.7e-24 114.8 120 48.3
PGSC0003DMG400004286 Solanum tuberosum HOM05D004576 ORTHO05D005321 6.1e-24 114.4 95 57.9
AT5G53000 Arabidopsis thaliana HOM05D004576 ORTHO05D005321 8.0e-24 114.0 105 53.3
GSVIVG01038559001 Vitis vinifera HOM05D004576 ORTHO05D005321 8.0e-24 114.0 105 54.3
Gohir.A12G249400 Gossypium hirsutum HOM05D004576 ORTHO05D005321 1.0e-23 113.6 105 52.4
PSO063G4456 Papaver somniferum HOM05D004576 ORTHO05D005321 1.0e-23 113.6 110 50.9
TWI39G0751 Tripterygium wilfordii HOM05D004576 ORTHO05D005321 1.0e-23 113.6 106 51.9
CARHR265990 Cardamine hirsuta HOM05D004576 ORTHO05D005321 1.4e-23 113.2 105 52.4
AL4G21090 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 1.8e-23 112.8 105 52.4
AL8G27600 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 1.8e-23 112.8 105 52.4
Oeu041059.3 Olea europaea HOM05D004576 ORTHO05D005321 1.8e-23 112.8 95 56.8
Lsat_1_v5_gn_3_139541 Lactuca sativa HOM05D004576 ORTHO05D005321 5.2e-23 111.3 108 54.6
Lsat_1_v5_gn_2_136141 Lactuca sativa HOM05D004576 ORTHO05D005321 1.5e-22 109.8 107 55.1
SEGI_39808 Sequoiadendron giganteum HOM05D004576 ORTHO05D005321 2.6e-22 109.0 95 55.8
Carub.0008s1320 Capsella rubella HOM05D004576 ORTHO05D005321 4.4e-22 108.2 109 48.6
Glyma.06G129650 Glycine max HOM05D005525 ORTHO05D006341 3.7e-21 105.1 104 50.0
SMO118G0543 Selaginella moellendorffii HOM05D004576 ORTHO05D005321 3.1e-20 102.1 95 51.6
MBI07_g24780_MAGBIO Magnolia biondii HOM05D004576 ORTHO05D005321 2.7e-19 99.0 74 66.2
Pp3c27_2200 Physcomitrium patens HOM05D004576 ORTHO05D005321 1.1e-17 93.6 101 44.6
Pp3c27_2230 Physcomitrium patens HOM05D004576 ORTHO05D005321 1.1e-17 93.6 101 44.6
AagrBONN_evm.TU.Sc2ySwM_368.1428 Anthoceros agrestis HOM05D004576 ORTHO05D005321 3.2e-17 92.0 105 45.7
SHI02368 Sapria himalayana HOM05D004576 ORTHO05D005321 1.4e-15 86.7 69 56.5
C02p18880 Brassica napus HOM05D004576 ORTHO05D005321 1.8e-15 86.3 106 42.5
BolC2t08029H Brassica oleracea HOM05D004576 ORTHO05D005321 5.2e-15 84.7 105 42.9
Mapoly0036s0077 Marchantia polymorpha HOM05D004576 ORTHO05D005321 7.7e-11 70.9 122 36.9
BcaC03g14466 Brassica carinata HOM05D004576 ORTHO05D005321 1.7e-10 69.7 73 45.2
Nitab4.5_0001620g0020 Nicotiana tabacum HOM05D004576 ORTHO05D005321 2.3e-10 69.3 63 54.0
MBI07_g45568_MAGBIO Magnolia biondii HOM05D004576 ORTHO05D005321 2.9e-10 68.9 42 66.7


User provided reference genes

Program Settings