Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0602G009 Amborella trichopoda HOM05D004563 ORTHO05D002944 3.1e-152 542.0 313 100.0
Aqoxy1G03185 Aquilegia oxysepala HOM05D004563 ORTHO05D002944 2.2e-12 77.4 70 57.1
TAR624G1329 Trochodendron aralioides HOM05D004563 ORTHO05D002944 3.7e-12 76.6 71 52.1
TAR626G0367 Trochodendron aralioides HOM05D004563 ORTHO05D002944 6.3e-12 75.9 71 52.1
QL08p041398 Quercus lobata HOM05D004563 ORTHO05D002944 1.8e-11 74.3 71 53.5
CiPaw.04G131700 Carya illinoinensis HOM05D004563 ORTHO05D002944 2.4e-11 73.9 65 52.3
Haze_13348 Corylus avellana HOM05D004563 ORTHO05D002944 2.4e-11 73.9 65 52.3
Dinv03911 Davidia involucrata HOM05D004563 ORTHO05D002944 2.0e-10 70.9 65 52.3
Manes.13G138000 Manihot esculenta HOM05D004563 ORTHO05D002944 2.0e-10 70.9 63 54.0
vmacro12368 Vaccinium macrocarpon HOM05D004563 ORTHO05D002944 2.6e-10 70.5 67 52.2
Lsat_1_v5_gn_8_140081 Lactuca sativa HOM05D004563 ORTHO05D002944 4.5e-10 69.7 63 54.0
CSS0006802 Camellia sinensis var. sinensis HOM05D004563 ORTHO05D002944 1.0e-09 68.6 65 50.8
Rhsim06G0133100 Rhododendron simsii HOM05D004563 ORTHO05D002944 1.0e-09 68.6 73 49.3
TWI59G1400 Tripterygium wilfordii HOM05D004563 ORTHO05D002944 1.0e-09 68.6 65 50.8
HanXRQChr17g0557991 Helianthus annuus HOM05D004563 ORTHO05D002944 1.3e-09 68.2 63 52.4
CANSAT64G2099 Cannabis sativa HOM05D004563 ORTHO05D002944 1.7e-09 67.8 69 50.7
Migut.M00253 Erythranthe guttata HOM05D004563 ORTHO05D002944 1.7e-09 67.8 64 51.6
Eucgr.A01904 Eucalyptus grandis HOM05D004563 ORTHO05D002944 2.2e-09 67.4 64 50.0
Dinv15459 Davidia involucrata HOM05D004563 ORTHO05D002944 2.9e-09 67.0 65 49.2
Hund07832 Selenicereus undatus HOM05D004563 ORTHO05D002944 2.9e-09 67.0 65 52.3
PGR042G0272 Punica granatum HOM05D004563 ORTHO05D002944 3.8e-09 66.6 64 50.0
Sabra13G0099900 Salix brachista HOM05D004563 ORTHO05D002944 5.0e-09 66.2 64 50.0
Medtr2g091180 Medicago truncatula HOM05D004563 ORTHO05D002944 6.5e-09 65.9 72 48.6
vmacro09501 Vaccinium macrocarpon HOM05D008023 ORTHO05D002944 6.5e-09 65.9 70 48.6
Glyma.13G291600 Glycine max HOM05D004563 ORTHO05D002944 8.5e-09 65.5 76 40.8
Nn1g09097 Nelumbo nucifera HOM05D004563 ORTHO05D002944 8.5e-09 65.5 71 46.5
SGA_v2.0_scaffold9G04806 Striga asiatica HOM05D004563 ORTHO05D002944 1.1e-08 65.1 65 47.7
Atru.chr6.2814 Acer truncatum HOM05D004563 ORTHO05D002944 1.4e-08 64.7 63 50.8
Potri.019G089900 Populus trichocarpa HOM05D004563 ORTHO05D002944 1.4e-08 64.7 64 50.0
SEGI_01253 Sequoiadendron giganteum HOM05D025414 ORTHO05D002944 1.4e-08 64.7 81 40.7
Nitab4.5_0003827g0050 Nicotiana tabacum HOM05D004563 ORTHO05D002944 1.9e-08 64.3 64 46.9
MSTRG.14316 Avicennia marina HOM05D004563 ORTHO05D002944 2.5e-08 63.9 67 47.8
Ciclev10015391m.g Citrus clementina HOM05D004563 ORTHO05D002944 2.5e-08 63.9 77 42.9
MBI07_g21399_MAGBIO Magnolia biondii HOM05D004563 ORTHO05D002944 2.5e-08 63.9 271 24.7
Nitab4.5_0010797g0050 Nicotiana tabacum HOM05D004563 ORTHO05D002944 2.5e-08 63.9 64 46.9
THA.LOC104800859 Tarenaya hassleriana HOM05D004563 ORTHO05D002944 2.5e-08 63.9 79 44.3
Solyc07g053320.4 Solanum lycopersicum HOM05D004563 ORTHO05D002944 3.2e-08 63.5 64 48.4
Thecc.07G105200 Theobroma cacao HOM05D008023 ORTHO05D002944 3.2e-08 63.5 82 40.2
DCAR_013061 Daucus carota HOM05D004563 ORTHO05D002944 4.2e-08 63.2 75 40.0
Rhsim04G0024700 Rhododendron simsii HOM05D008023 ORTHO05D002944 4.2e-08 63.2 70 45.7
Sopen07g027280 Solanum pennellii HOM05D004563 ORTHO05D002944 4.2e-08 63.2 64 48.4
Aa31LG5G5790 Aethionema arabicum HOM05D004563 ORTHO05D002944 5.5e-08 62.8 58 51.7
EL10Ac9g20912 Beta vulgaris HOM05D004563 ORTHO05D002944 5.5e-08 62.8 65 43.1
Cfa019590 Carpinus fangiana HOM05D008023 ORTHO05D002944 5.5e-08 62.8 69 47.8
AL4G26310 Arabidopsis lyrata HOM05D004563 ORTHO05D002944 7.2e-08 62.4 63 49.2
Cpa.g.sc131.62 Carica papaya HOM05D008023 ORTHO05D002944 7.2e-08 62.4 65 43.1
Dinv14971 Davidia involucrata HOM05D000845 ORTHO05D003813 7.2e-08 62.4 59 52.5
Gohir.D10G032200 Gossypium hirsutum HOM05D004563 ORTHO05D002944 7.2e-08 62.4 68 45.6
SalBow7G0314 Salvia bowleyana HOM05D004563 ORTHO05D002944 7.2e-08 62.4 64 50.0
BraA04t17911Z Brassica rapa HOM05D004563 ORTHO05D002944 9.4e-08 62.0 78 46.2
Haze_09349 Corylus avellana HOM05D008023 ORTHO05D002944 9.4e-08 62.0 66 48.5
CsaV3_4G033230 Cucumis sativus L. HOM05D008023 ORTHO05D010897 9.4e-08 62.0 85 40.0
Gohir.A10G031400 Gossypium hirsutum HOM05D004563 ORTHO05D002944 9.4e-08 62.0 68 45.6
Lj1A833T49 Lonicera japonica HOM05D008023 ORTHO05D002944 9.4e-08 62.0 65 50.8
Prupe.3G122900 Prunus persica HOM05D004563 ORTHO05D002944 9.4e-08 62.0 64 48.4
PGSC0003DMG400020429 Solanum tuberosum HOM05D004563 ORTHO05D002944 9.4e-08 62.0 64 46.9
THA.LOC104800862 Tarenaya hassleriana HOM05D004563 ORTHO05D002944 9.4e-08 62.0 79 44.3
Ca_01462_v3 Cicer arietinum L. HOM05D004563 ORTHO05D002944 1.2e-07 61.6 62 45.2
ClCG11G017550 Citrullus lanatus HOM05D008023 ORTHO05D002944 1.2e-07 61.6 85 40.0
Duzib235G1377 Durio zibethinus HOM05D004563 ORTHO05D002944 1.2e-07 61.6 66 48.5
Sabra16G0248200 Salix brachista HOM05D008023 ORTHO05D002944 1.2e-07 61.6 76 39.5
SalBow7G0936 Salvia bowleyana HOM05D004563 ORTHO05D002944 1.2e-07 61.6 64 50.0
Sp4g13600 Schrenkiella parvula HOM05D004563 ORTHO05D002944 1.2e-07 61.6 61 49.2
A04p23880 Brassica napus HOM05D004563 ORTHO05D002944 1.6e-07 61.2 77 45.5
Gorai.011G033900 Gossypium raimondii HOM05D004563 ORTHO05D002944 1.6e-07 61.2 68 44.1
Sed0020403 Sechium edule HOM05D004563 ORTHO05D002944 1.6e-07 61.2 66 50.0
unitig_747.g21618 Utricularia gibba HOM05D004563 ORTHO05D002944 1.6e-07 61.2 64 43.8
CSS0022203 Camellia sinensis var. sinensis HOM05D008023 ORTHO05D002944 2.1e-07 60.8 70 44.3
CSS0035750 Camellia sinensis var. sinensis HOM05D008023 ORTHO05D002944 2.1e-07 60.8 70 44.3
CSS0038794 Camellia sinensis var. sinensis HOM05D008023 ORTHO05D002944 2.1e-07 60.8 70 44.3
CSS0041377 Camellia sinensis var. sinensis HOM05D008023 ORTHO05D002944 2.1e-07 60.8 70 44.3
Gohir.D06G136800 Gossypium hirsutum HOM05D004563 ORTHO05D002944 2.1e-07 60.8 66 45.5
Gorai.010G159000 Gossypium raimondii HOM05D004563 ORTHO05D002944 2.1e-07 60.8 66 45.5
Oeu032703.1 Olea europaea HOM05D004563 ORTHO05D002944 2.1e-07 60.8 60 48.3
Potri.013G118000 Populus trichocarpa HOM05D004563 ORTHO05D002944 2.1e-07 60.8 64 48.4
Sabra19G0103600 Salix brachista HOM05D004563 ORTHO05D002944 2.1e-07 60.8 74 44.6
AT2G31130 Arabidopsis thaliana HOM05D004563 ORTHO05D002944 2.7e-07 60.5 63 47.6
BcaB06g28418 Brassica carinata HOM05D004563 ORTHO05D002944 2.7e-07 60.5 66 43.9
CiPaw.11G162800 Carya illinoinensis HOM05D008023 ORTHO05D002944 2.7e-07 60.5 72 43.1
COL.COLO4_31315 Corchorus olitorius HOM05D005057 ORTHO05D006570 2.7e-07 60.5 69 42.0
MELO3C025631.2 Cucumis melo HOM05D008023 ORTHO05D002944 2.7e-07 60.5 85 40.0
Duzib170G0431 Durio zibethinus HOM05D008023 ORTHO05D002944 2.7e-07 60.5 82 39.0
QL08p026875 Quercus lobata HOM05D008023 ORTHO05D002944 2.7e-07 60.5 66 47.0
Actinidia10974 Actinidia chinensis HOM05D004563 ORTHO05D002944 3.6e-07 60.1 64 45.3
Actinidia11133 Actinidia chinensis HOM05D004563 ORTHO05D002944 3.6e-07 60.1 64 46.9
BcaC01g05977 Brassica carinata HOM05D004563 ORTHO05D002944 3.6e-07 60.1 79 41.8
C03p20530 Brassica napus HOM05D004563 ORTHO05D002944 3.6e-07 60.1 79 41.8
Carub.0004s1239 Capsella rubella HOM05D004563 ORTHO05D002944 3.6e-07 60.1 58 50.0
Duzib147G1211 Durio zibethinus HOM05D004563 ORTHO05D002944 3.6e-07 60.1 69 47.8
BcaB01g04062 Brassica carinata HOM05D004563 ORTHO05D002944 4.7e-07 59.7 74 40.5
Gohir.A10G153900 Gossypium hirsutum HOM05D004563 ORTHO05D002944 4.7e-07 59.7 69 47.8
Gohir.D10G112200 Gossypium hirsutum HOM05D004563 ORTHO05D002944 4.7e-07 59.7 69 47.8
Gorai.011G124100 Gossypium raimondii HOM05D004563 ORTHO05D002944 4.7e-07 59.7 69 47.8
Oeu051114.4 Olea europaea HOM05D008023 ORTHO05D002944 4.7e-07 59.7 66 47.0
Rhsim04G0073900 Rhododendron simsii HOM05D004563 ORTHO05D002944 4.7e-07 59.7 59 47.5
Sed0004710 Sechium edule HOM05D004563 ORTHO05D002944 4.7e-07 59.7 60 51.7
arahy.Tifrunner.gnm1.ann1.B2LHN7 Arachis hypogaea HOM05D004563 ORTHO05D002944 6.1e-07 59.3 75 38.7
Gohir.A11G287000 Gossypium hirsutum HOM05D008023 ORTHO05D002944 6.1e-07 59.3 65 44.6
MD17G1232800 Malus domestica HOM05D004563 ORTHO05D002944 6.1e-07 59.3 64 46.9
A03p17400 Brassica napus HOM05D004563 ORTHO05D002944 7.9e-07 58.9 79 40.5
BraA03t11011Z Brassica rapa HOM05D004563 ORTHO05D002944 7.9e-07 58.9 79 40.5
BolC3t14433H Brassica oleracea HOM05D004563 ORTHO05D002944 1.0e-06 58.5 79 40.5
CARHR124710 Cardamine hirsuta HOM05D004563 ORTHO05D002944 1.0e-06 58.5 63 44.4
ClCG02G017950 Citrullus lanatus HOM05D004563 ORTHO05D002944 1.0e-06 58.5 60 50.0
MELO3C019761.2 Cucumis melo HOM05D004563 ORTHO05D002944 1.0e-06 58.5 60 50.0
CsaV3_6G018840 Cucumis sativus L. HOM05D004563 ORTHO05D002944 1.0e-06 58.5 60 50.0
Duzib213G0674 Durio zibethinus HOM05D008023 ORTHO05D002944 1.0e-06 58.5 88 36.4
FAN05G5668 Fragaria x ananassa HOM05D004563 ORTHO05D002944 1.0e-06 58.5 63 46.0
FAN09G1171 Fragaria x ananassa HOM05D004563 ORTHO05D002944 1.0e-06 58.5 63 46.0
Glyma.06G231200 Glycine max HOM05D008023 ORTHO05D002944 1.0e-06 58.5 70 45.7
Glyma.18G179200 Glycine max HOM05D004563 ORTHO05D002944 1.0e-06 58.5 75 37.3
Lj3g0023253 Lotus japonicus HOM05D004563 ORTHO05D002944 1.0e-06 58.5 79 40.5
Potri.001G376800 Populus trichocarpa HOM05D008023 ORTHO05D002944 1.0e-06 58.5 76 35.5
arahy.Tifrunner.gnm1.ann1.47XKI7 Arachis hypogaea HOM05D004563 ORTHO05D002944 1.4e-06 58.2 63 41.3
arahy.Tifrunner.gnm1.ann1.65XND6 Arachis hypogaea HOM05D004563 ORTHO05D002944 1.4e-06 58.2 60 46.7
AUR62038920 Chenopodium quinoa HOM05D004563 ORTHO05D002944 1.4e-06 58.2 67 43.3
Dinv40663 Davidia involucrata HOM05D014353 ORTHO05D002944 1.4e-06 58.2 69 44.9
FAN02G0553 Fragaria x ananassa HOM05D004563 ORTHO05D002944 1.4e-06 58.2 63 46.0
FAN09G4605 Fragaria x ananassa HOM05D004563 ORTHO05D002944 1.4e-06 58.2 63 46.0
Glyma.12G122400 Glycine max HOM05D004563 ORTHO05D002944 1.4e-06 58.2 59 44.1
Nitab4.5_0006772g0010 Nicotiana tabacum HOM05D004563 ORTHO05D002944 1.4e-06 58.2 65 43.1
CAN.G318.9 Capsicum annuum HOM05D004563 ORTHO05D002944 1.8e-06 57.8 65 43.1
Sed0024688 Sechium edule HOM05D008023 ORTHO05D002944 1.8e-06 57.8 85 40.0
Thecc.01G148500 Theobroma cacao HOM05D004563 ORTHO05D002944 1.8e-06 57.8 69 46.4
FvH4_6g27121 Fragaria vesca HOM05D004563 ORTHO05D002944 2.3e-06 57.4 63 46.0
FAN14G3451 Fragaria x ananassa HOM05D004563 ORTHO05D002944 2.3e-06 57.4 63 46.0
Gorai.007G325900 Gossypium raimondii HOM05D008023 ORTHO05D002944 2.3e-06 57.4 65 43.1
Sc21g0003700 Simmondsia chinensis HOM05D004563 ORTHO05D002944 2.3e-06 57.4 63 44.4
Cc05_g08130 Coffea canephora HOM05D004563 ORTHO05D002944 3.0e-06 57.0 65 43.1
Nitab4.5_0000537g0100 Nicotiana tabacum HOM05D004563 ORTHO05D002944 3.0e-06 57.0 65 41.5
Peaxi162Scf00469g00139 Petunia axillaris HOM05D004563 ORTHO05D002944 3.0e-06 57.0 64 42.2
Prupe.4G170200 Prunus persica HOM05D008023 ORTHO05D002944 3.0e-06 57.0 62 45.2
RcHm_v2.0_Chr2g0128481 Rosa chinensis HOM05D004563 ORTHO05D002944 3.0e-06 57.0 63 46.0
RcHm_v2.0_Chr2g0129081 Rosa chinensis HOM05D004563 ORTHO05D002944 3.0e-06 57.0 63 46.0
TWI39G0037 Tripterygium wilfordii HOM05D008023 ORTHO05D002944 3.0e-06 57.0 66 42.4
BcaB02g10364 Brassica carinata HOM05D004563 ORTHO05D002944 3.9e-06 56.6 61 44.3
BraA05t20385Z Brassica rapa HOM05D004563 ORTHO05D002944 3.9e-06 56.6 83 38.6
Lalb_Chr14g0367401 Lupinus albus HOM05D004563 ORTHO05D002944 3.9e-06 56.6 63 44.4
MD09G1239700 Malus domestica HOM05D004563 ORTHO05D002944 3.9e-06 56.6 64 45.3
Manes.03G103000 Manihot esculenta HOM05D008023 ORTHO05D002944 3.9e-06 56.6 71 40.8
VMungo1127G1865 Vigna mungo HOM05D004563 ORTHO05D002944 3.9e-06 56.6 62 38.7
arahy.Tifrunner.gnm1.ann1.P6YWRU Arachis hypogaea HOM05D004563 ORTHO05D002944 5.1e-06 56.2 60 45.0
A05p14540 Brassica napus HOM05D004563 ORTHO05D002944 5.1e-06 56.2 83 38.6
Thhalv10016698m.g Eutrema salsugineum HOM05D004563 ORTHO05D002944 5.1e-06 56.2 79 40.5
Lsat_1_v5_gn_9_99560 Lactuca sativa HOM05D029722 ORTHO05D002944 5.1e-06 56.2 70 42.9
Lalb_Chr19g0134931 Lupinus albus HOM05D004563 ORTHO05D002944 5.1e-06 56.2 63 42.9
Peaxi162Scf00384g00511 Petunia axillaris HOM05D004563 ORTHO05D002944 5.1e-06 56.2 64 42.2
Solyc12g010830.2 Solanum lycopersicum HOM05D004563 ORTHO05D002944 5.1e-06 56.2 65 41.5
Sopen12g006190 Solanum pennellii HOM05D004563 ORTHO05D002944 5.1e-06 56.2 65 41.5
PGSC0003DMG400007808 Solanum tuberosum HOM05D004563 ORTHO05D002944 5.1e-06 56.2 65 41.5
Thecc.06G172300 Theobroma cacao HOM05D004563 ORTHO05D002944 5.1e-06 56.2 63 46.0
Gohir.D11G306100 Gossypium hirsutum HOM05D008023 ORTHO05D002944 6.7e-06 55.8 65 41.5
PSO541G0319 Papaver somniferum HOM05D004563 ORTHO05D002944 8.8e-06 55.5 65 43.1


User provided reference genes

Program Settings