Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0598G258 Amborella trichopoda HOM05D002335 ORTHO05D006692 1.6e-108 396.0 186 100.0
CDE05G1851 Ceratophyllum demersum HOM05D002335 ORTHO05D006692 8.7e-78 293.9 184 70.7
Nn6g35620 Nelumbo nucifera HOM05D002335 ORTHO05D006692 2.1e-76 289.3 185 69.2
TAR626G0579 Trochodendron aralioides HOM05D002335 ORTHO05D006692 4.0e-75 285.0 186 68.8
MBI13_g42820_MAGBIO Magnolia biondii HOM05D002335 ORTHO05D006692 3.4e-74 282.0 179 71.5
Cfa002991 Carpinus fangiana HOM05D002335 ORTHO05D006692 5.8e-74 281.2 184 67.9
Haze_26010 Corylus avellana HOM05D002335 ORTHO05D006692 5.8e-74 281.2 184 67.9
GSVIVG01015085001 Vitis vinifera HOM05D002335 ORTHO05D006692 1.3e-73 280.0 185 67.6
Sed0014235 Sechium edule HOM05D002335 ORTHO05D006692 6.5e-73 277.7 184 68.5
MBI19_g11823_MAGBIO Magnolia biondii HOM05D002335 ORTHO05D006692 1.1e-72 276.9 181 70.7
MBI19_g37791_MAGBIO Magnolia biondii HOM05D002335 ORTHO05D006692 1.1e-72 276.9 181 70.7
Potri.018G065800 Populus trichocarpa HOM05D002335 ORTHO05D006692 1.4e-72 276.6 186 67.2
ClCG03G015100 Citrullus lanatus HOM05D002335 ORTHO05D006692 3.2e-72 275.4 184 67.4
TWI34G0950 Tripterygium wilfordii HOM05D002335 ORTHO05D006692 4.2e-72 275.0 186 66.7
CiPaw.04G143300 Carya illinoinensis HOM05D002335 ORTHO05D006692 5.5e-72 274.6 184 66.8
Lj4g0006964 Lotus japonicus HOM05D002335 ORTHO05D006692 5.5e-72 274.6 180 67.8
Potri.006G142000 Populus trichocarpa HOM05D002335 ORTHO05D006692 5.5e-72 274.6 183 67.2
MELO3C015519.2 Cucumis melo HOM05D002335 ORTHO05D006692 7.1e-72 274.2 184 67.4
Sed0016579 Sechium edule HOM05D002335 ORTHO05D006692 7.1e-72 274.2 184 68.5
CSS0035766 Camellia sinensis var. sinensis HOM05D002335 ORTHO05D006692 9.3e-72 273.9 186 66.7
CSS0046237 Camellia sinensis var. sinensis HOM05D002335 ORTHO05D006692 9.3e-72 273.9 186 66.7
PSO135G0567 Papaver somniferum HOM05D002335 ORTHO05D006692 1.2e-71 273.5 177 70.6
CsaV3_1G041010 Cucumis sativus L. HOM05D002335 ORTHO05D006692 2.1e-71 272.7 183 67.2
Glyma.13G110300 Glycine max HOM05D002335 ORTHO05D006692 2.7e-71 272.3 177 67.8
Phvul.003G130900 Phaseolus vulgaris HOM05D002335 ORTHO05D006692 2.7e-71 272.3 184 66.8
Glyma.17G049400 Glycine max HOM05D002335 ORTHO05D006692 3.5e-71 271.9 177 67.2
QL11p000707 Quercus lobata HOM05D002335 ORTHO05D006692 3.5e-71 271.9 184 66.8
Ciclev10009634m.g Citrus clementina HOM05D002335 ORTHO05D006692 6.0e-71 271.2 186 65.1
Aqoxy7G04078 Aquilegia oxysepala HOM05D002335 ORTHO05D006692 1.8e-70 269.6 178 66.3
VMungo1215G3327 Vigna mungo HOM05D002335 ORTHO05D006692 2.3e-70 269.2 187 66.8
CDE11G0744 Ceratophyllum demersum HOM05D002335 ORTHO05D006692 6.7e-70 267.7 207 60.4
Hma1.2p1_0169F.1_g074550 Hydrangea macrophylla HOM05D002335 ORTHO05D006692 1.1e-69 266.9 182 66.5
Hma1.2p1_0169F.1_g074601 Hydrangea macrophylla HOM05D002335 ORTHO05D006692 1.1e-69 266.9 182 66.5
Lalb_Chr12g0200131 Lupinus albus HOM05D002335 ORTHO05D006692 1.5e-69 266.5 184 65.2
Hund26036 Selenicereus undatus HOM05D002335 ORTHO05D006692 1.5e-69 266.5 177 66.1
Manes.03G040300 Manihot esculenta HOM05D002335 ORTHO05D006692 1.9e-69 266.2 186 62.9
Zm00001eb081660 Zea mays HOM05D002335 ORTHO05D006692 1.9e-69 266.2 171 68.4
Psat4g017640 Pisum sativum HOM05D002335 ORTHO05D006692 2.5e-69 265.8 184 64.1
Sopen12g004030 Solanum pennellii HOM05D002335 ORTHO05D006692 4.3e-69 265.0 175 66.9
RcHm_v2.0_Chr2g0094901 Rosa chinensis HOM05D002335 ORTHO05D006692 5.7e-69 264.6 178 64.0
Actinidia29931 Actinidia chinensis HOM05D002335 ORTHO05D006692 2.2e-68 262.7 185 64.3
Sc18g0002530 Simmondsia chinensis HOM05D002335 ORTHO05D006692 2.2e-68 262.7 182 63.2
Migut.L01564 Erythranthe guttata HOM05D002335 ORTHO05D006692 4.8e-68 261.5 183 63.4
Solyc07g041780.3 Solanum lycopersicum HOM05D002335 ORTHO05D006692 4.8e-68 261.5 175 68.0
Peaxi162Scf00127g00206 Petunia axillaris HOM05D002335 ORTHO05D006692 6.3e-68 261.2 175 66.3
Lsat_1_v5_gn_7_35121 Lactuca sativa HOM05D002335 ORTHO05D006692 8.2e-68 260.8 184 63.6
Oeu049119.1 Olea europaea HOM05D002335 ORTHO05D006692 8.2e-68 260.8 179 63.1
PGSC0003DMG400013000 Solanum tuberosum HOM05D002335 ORTHO05D006692 8.2e-68 260.8 175 68.6
Dinv25560 Davidia involucrata HOM05D002335 ORTHO05D006692 1.8e-67 259.6 184 63.6
ECA240G4665 Erigeron canadensis HOM05D002335 ORTHO05D006692 1.8e-67 259.6 182 62.6
Prupe.7G199200 Prunus persica HOM05D002335 ORTHO05D006692 1.8e-67 259.6 178 65.2
AT2G06010 Arabidopsis thaliana HOM05D002335 ORTHO05D006692 4.1e-67 258.5 180 63.3
Carub.0003s2714 Capsella rubella HOM05D002335 ORTHO05D006692 4.1e-67 258.5 180 62.8
Cpa.g.sc28.42 Carica papaya HOM05D002335 ORTHO05D006692 4.1e-67 258.5 200 61.0
COL.COLO4_18100 Corchorus olitorius HOM05D002335 ORTHO05D006692 5.3e-67 258.1 192 62.5
Gorai.010G088300 Gossypium raimondii HOM05D002335 ORTHO05D006692 5.3e-67 258.1 175 64.0
SGA_v2.0_scaffold308G48074 Striga asiatica HOM05D002335 ORTHO05D006692 1.2e-66 256.9 182 64.3
AUR62025248 Chenopodium quinoa HOM05D002335 ORTHO05D006692 1.5e-66 256.5 176 64.8
AUR62028936 Chenopodium quinoa HOM05D002335 ORTHO05D006692 1.5e-66 256.5 176 64.8
Gohir.A06G076400 Gossypium hirsutum HOM05D002335 ORTHO05D006692 1.5e-66 256.5 175 64.0
Sopen07g021270 Solanum pennellii HOM05D002335 ORTHO05D006692 1.5e-66 256.5 175 67.4
AL3G43590 Arabidopsis lyrata HOM05D002335 ORTHO05D006692 2.0e-66 256.1 180 62.8
BcaB06g26882 Brassica carinata HOM05D002335 ORTHO05D006692 2.0e-66 256.1 180 62.2
A07p06320 Brassica napus HOM05D002335 ORTHO05D006282 2.0e-66 256.1 177 62.7
BraA07t28424Z Brassica rapa HOM05D002335 ORTHO05D006282 2.0e-66 256.1 177 62.7
BcaC06g35951 Brassica carinata HOM05D002335 ORTHO05D006692 3.4e-66 255.4 177 62.7
PGSC0003DMG400000324 Solanum tuberosum HOM05D002335 ORTHO05D006692 3.4e-66 255.4 195 61.0
THA.LOC104826590 Tarenaya hassleriana HOM05D002335 ORTHO05D006692 3.4e-66 255.4 177 63.3
EL10Ac8g19062 Beta vulgaris HOM05D002335 ORTHO05D006692 4.5e-66 255.0 176 63.6
Thhalv10008863m.g Eutrema salsugineum HOM05D002335 ORTHO05D006692 4.5e-66 255.0 180 61.7
MSTRG.10511 Avicennia marina HOM05D002335 ORTHO05D006692 5.9e-66 254.6 184 60.9
C07p09370 Brassica napus HOM05D002335 ORTHO05D006282 5.9e-66 254.6 177 62.1
BolC7t41360H Brassica oleracea HOM05D002335 ORTHO05D006282 5.9e-66 254.6 177 62.1
Sp3g24590 Schrenkiella parvula HOM05D002335 ORTHO05D006692 7.7e-66 254.2 180 61.1
CARHR103670 Cardamine hirsuta HOM05D002335 ORTHO05D006692 1.3e-65 253.4 177 61.0
SalBow5G0979 Salvia bowleyana HOM05D002335 ORTHO05D006692 1.3e-65 253.4 184 60.9
SalBow5G2105 Salvia bowleyana HOM05D002335 ORTHO05D006692 1.3e-65 253.4 184 60.9
Aa31sc133G40 Aethionema arabicum HOM05D002335 ORTHO05D006692 1.7e-65 253.1 180 61.1
PGR044G0908 Punica granatum HOM05D002335 ORTHO05D006692 2.2e-65 252.7 173 63.6
FvH4_1g08630 Fragaria vesca HOM05D002335 ORTHO05D006692 2.9e-65 252.3 181 61.3
DCAR_024750 Daucus carota HOM05D002335 ORTHO05D006692 3.8e-65 251.9 185 61.6
DCAR_031919 Daucus carota HOM05D002335 ORTHO05D006692 3.8e-65 251.9 185 61.6
THA.LOC104815332 Tarenaya hassleriana HOM05D002335 ORTHO05D006692 3.8e-65 251.9 178 62.9
CANSAT56G4475 Cannabis sativa HOM05D002335 ORTHO05D006692 8.5e-65 250.8 176 63.1
FAN28G2258 Fragaria x ananassa HOM05D002335 ORTHO05D006692 8.5e-65 250.8 184 60.3
MD02G1091100 Malus domestica HOM05D002335 ORTHO05D006692 1.4e-64 250.0 180 62.2
FAN23G0492 Fragaria x ananassa HOM05D002335 ORTHO05D006692 1.9e-64 249.6 181 60.8
PGR044G2482 Punica granatum HOM05D002335 ORTHO05D006692 2.5e-64 249.2 173 63.6
MD15G1217300 Malus domestica HOM05D002335 ORTHO05D006692 7.2e-64 247.7 180 61.1
Eucgr.C03267 Eucalyptus grandis HOM05D002335 ORTHO05D006692 2.1e-63 246.1 183 59.0
vmacro17199 Vaccinium macrocarpon HOM05D002335 ORTHO05D006692 4.6e-63 245.0 215 54.4
Eucgr.C03511 Eucalyptus grandis HOM05D002335 ORTHO05D006692 7.9e-63 244.2 183 58.5
Eucgr.C03340 Eucalyptus grandis HOM05D002335 ORTHO05D006692 1.4e-62 243.4 183 58.5
Eucgr.C03501 Eucalyptus grandis HOM05D002335 ORTHO05D006692 2.3e-62 242.7 183 58.5
Eucgr.C03348 Eucalyptus grandis HOM05D002335 ORTHO05D006692 8.8e-62 240.7 183 57.4
Eucgr.H02780 Eucalyptus grandis HOM05D002335 ORTHO05D006692 8.8e-62 240.7 183 56.8
Rhsim05G0007700 Rhododendron simsii HOM05D002335 ORTHO05D006692 2.0e-61 239.6 168 63.1
FAN19G2961 Fragaria x ananassa HOM05D002335 ORTHO05D006692 4.3e-61 238.4 202 54.5
HPP92_013380 Vanilla planifolia HOM05D002335 ORTHO05D006692 9.7e-61 237.3 146 71.2
Cc06_g12140 Coffea canephora HOM05D002335 ORTHO05D006692 6.3e-60 234.6 156 66.0
Mapoly0146s0032 Marchantia polymorpha HOM05D002335 ORTHO05D006692 6.3e-60 234.6 176 56.8
Sabra06G0111100 Salix brachista HOM05D002335 ORTHO05D006692 2.4e-59 232.6 156 66.0
FAN26G1566 Fragaria x ananassa HOM05D002335 ORTHO05D006692 4.1e-59 231.9 223 49.8
FAN26G0120 Fragaria x ananassa HOM05D002335 ORTHO05D006692 5.3e-59 231.5 223 49.3
Thecc.09G077400 Theobroma cacao HOM05D002335 ORTHO05D006692 9.1e-59 230.7 151 66.9
HanXRQChr03g0060151 Helianthus annuus HOM05D002335 ORTHO05D006692 1.5e-58 229.9 164 62.8
Dinv42391 Davidia involucrata HOM05D002335 ORTHO05D006692 2.6e-58 229.2 170 62.4
CAN.G1963.2 Capsicum annuum HOM05D002335 ORTHO05D006692 4.5e-58 228.4 149 65.8
vmacro06340 Vaccinium macrocarpon HOM05D002335 ORTHO05D006692 5.9e-58 228.0 187 56.1
TPR.G12576 Trifolium pratense HOM05D002335 ORTHO05D006692 1.3e-57 226.9 147 66.0
Ca_21321_v3 Cicer arietinum L. HOM05D002335 ORTHO05D006692 2.9e-57 225.7 149 65.1
Solyc12g009080.2 Solanum lycopersicum HOM05D002335 ORTHO05D006692 8.5e-57 224.2 147 66.0
arahy.Tifrunner.gnm1.ann1.0T42SY Arachis hypogaea HOM05D002335 ORTHO05D006692 1.9e-56 223.0 177 58.8
arahy.Tifrunner.gnm1.ann1.U5UTMI Arachis hypogaea HOM05D002335 ORTHO05D006692 3.2e-56 222.2 177 58.8
Eucgr.C03331 Eucalyptus grandis HOM05D002335 ORTHO05D006692 3.2e-56 222.2 162 59.9
Atru.chr7.1701 Acer truncatum HOM05D002335 ORTHO05D006692 9.4e-56 220.7 151 62.9
Nitab4.5_0000073g0180 Nicotiana tabacum HOM05D002335 ORTHO05D006692 3.9e-54 215.3 144 65.3
SEGI_04946 Sequoiadendron giganteum HOM05D002335 ORTHO05D006692 5.1e-54 214.9 124 76.6
Medtr4g125360 Medicago truncatula HOM05D002335 ORTHO05D006692 6.7e-54 214.5 139 66.9
SMO361G0221 Selaginella moellendorffii HOM05D002335 ORTHO05D006692 6.3e-52 208.0 175 50.9
SMO361G0519 Selaginella moellendorffii HOM05D002335 ORTHO05D006692 6.3e-52 208.0 175 50.9
Peaxi162Scf00928g00035 Petunia axillaris HOM05D002335 ORTHO05D006692 4.1e-51 205.3 177 54.8
unitig_8.g3530 Utricularia gibba HOM05D002335 ORTHO05D006692 5.9e-50 201.4 184 51.1
Rhsim03G0227700 Rhododendron simsii HOM05D002335 ORTHO05D006692 1.9e-48 196.4 269 40.1
AagrBONN_evm.TU.Sc2ySwM_368.225 Anthoceros agrestis HOM05D002335 ORTHO05D006692 2.7e-47 192.6 192 46.9
Lj7A687T54 Lonicera japonica HOM05D002335 ORTHO05D006692 3.1e-43 179.1 194 50.0
Pp3c2_1630 Physcomitrium patens HOM05D002335 ORTHO05D006692 2.6e-42 176.0 171 44.4
Eucgr.C03278 Eucalyptus grandis HOM05D002335 ORTHO05D006692 3.5e-42 175.6 118 61.9
AagrBONN_evm.TU.Sc2ySwM_368.521 Anthoceros agrestis HOM05D002335 ORTHO05D006692 5.9e-42 174.9 210 41.4
Pp3c14_25980 Physcomitrium patens HOM05D002335 ORTHO05D006692 1.0e-41 174.1 182 42.9
HPP92_013408 Vanilla planifolia HOM05D006937 ORTHO05D008747 1.6e-39 166.8 164 50.0
unitig_899.g15177 Utricularia gibba HOM05D002335 ORTHO05D006692 6.1e-39 164.9 168 44.0
Gohir.D06G075400 Gossypium hirsutum HOM05D002335 ORTHO05D006692 6.7e-38 161.4 175 44.6
HPP92_013382 Vanilla planifolia HOM05D002335 ORTHO05D006692 1.3e-36 157.1 92 72.8
Ah.09g231610 Amaranthus hybridus HOM05D002335 ORTHO05D006692 6.3e-36 154.8 197 42.6
CBR_g38469 Chara braunii HOM05D002335 ORTHO05D006692 2.0e-34 149.8 142 47.9
Nitab4.5_0002966g0010 Nicotiana tabacum HOM05D002335 ORTHO05D006692 3.5e-34 149.1 91 69.2
Nitab4.5_0011754g0020 Nicotiana tabacum HOM05D002335 ORTHO05D006692 1.7e-33 146.7 182 47.8
Eucgr.C03281 Eucalyptus grandis HOM05D002335 ORTHO05D006692 2.2e-28 129.8 88 60.2
Eucgr.L03294 Eucalyptus grandis HOM05D002335 ORTHO05D006692 1.6e-26 123.6 140 43.6
Eucgr.C03513 Eucalyptus grandis HOM05D002335 ORTHO05D006692 6.6e-25 118.2 143 44.1
Os04g0446200 Oryza sativa ssp. japonica HOM05D002335 ORTHO05D006692 2.3e-22 109.8 83 59.0
vmacro17200 Vaccinium macrocarpon HOM05D001119 ORTHO05D000862 3.1e-06 56.2 51 51.0
Thecc.09G077100 Theobroma cacao HOM05D001119 ORTHO05D000862 8.9e-06 54.7 68 41.2


User provided reference genes

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