Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0598G196 Amborella trichopoda HOM05D006080 ORTHO05D007382 9.7e-153 544.3 487 100.0
CDE02G4345 Ceratophyllum demersum HOM05D006080 ORTHO05D007382 1.4e-31 141.7 237 32.9
Prupe.7G198600 Prunus persica HOM05D006080 ORTHO05D007382 1.8e-26 124.8 165 40.0
vmacro00920 Vaccinium macrocarpon HOM05D006080 ORTHO05D007382 1.8e-26 124.8 229 33.6
Atru.chr7.1705 Acer truncatum HOM05D006080 ORTHO05D007382 4.1e-26 123.6 199 36.2
MD02G1091700 Malus domestica HOM05D006080 ORTHO05D007382 5.3e-26 123.2 176 38.6
Rhsim04G0100300 Rhododendron simsii HOM05D006080 ORTHO05D007382 7.0e-26 122.9 203 35.0
Rhsim12G0001600 Rhododendron simsii HOM05D006080 ORTHO05D007382 2.0e-25 121.3 204 35.3
Nn7g36733 Nelumbo nucifera HOM05D006080 ORTHO05D007382 2.6e-25 120.9 149 42.3
MD15G1217800 Malus domestica HOM05D006080 ORTHO05D007382 3.5e-25 120.6 162 40.1
QL02p058222 Quercus lobata HOM05D006080 ORTHO05D007382 7.7e-25 119.4 189 37.0
QL93p0100_0628 Quercus lobata HOM05D006080 ORTHO05D007382 7.7e-25 119.4 189 37.0
Sc14g0000540 Simmondsia chinensis HOM05D006080 ORTHO05D007382 1.0e-24 119.0 124 45.2
CiPaw.03G206100 Carya illinoinensis HOM05D006080 ORTHO05D007382 1.3e-24 118.6 189 37.0
TWI14G1385 Tripterygium wilfordii HOM05D006080 ORTHO05D007382 8.5e-24 115.9 121 47.1
Oeu000645.1 Olea europaea HOM05D006080 ORTHO05D007382 7.2e-23 112.8 206 33.0
MBI19_g16224_MAGBIO Magnolia biondii HOM05D006080 ORTHO05D007382 1.2e-22 112.1 211 34.1
Sc08g0008900 Simmondsia chinensis HOM05D006080 ORTHO05D007382 1.2e-22 112.1 130 39.2
Ciclev10007804m.g Citrus clementina HOM05D006080 ORTHO05D007382 3.6e-22 110.5 200 32.5
CSS0008787 Camellia sinensis var. sinensis HOM05D006080 ORTHO05D007382 6.1e-22 109.8 283 29.7
Haze_26015 Corylus avellana HOM05D006080 ORTHO05D007382 8.0e-22 109.4 155 40.0
Sed0020593 Sechium edule HOM05D006080 ORTHO05D007382 8.0e-22 109.4 181 34.3
TAR383G0956 Trochodendron aralioides HOM05D006080 ORTHO05D007382 8.0e-22 109.4 112 45.5
Aqoxy5G04299 Aquilegia oxysepala HOM05D006080 ORTHO05D007382 1.0e-21 109.0 206 34.5
arahy.Tifrunner.gnm1.ann1.YW7MJY Arachis hypogaea HOM05D006080 ORTHO05D007382 1.8e-21 108.2 199 34.2
FAN04G2899 Fragaria x ananassa HOM05D006080 ORTHO05D007382 1.8e-21 108.2 253 31.6
Cfa002986 Carpinus fangiana HOM05D006080 ORTHO05D007382 5.2e-21 106.7 155 39.4
HanXRQChr10g0292001 Helianthus annuus HOM05D006080 ORTHO05D007382 5.2e-21 106.7 202 31.7
TWI59G0376 Tripterygium wilfordii HOM05D006080 ORTHO05D007382 6.7e-21 106.3 134 40.3
CSS0013189 Camellia sinensis var. sinensis HOM05D006080 ORTHO05D007382 8.8e-21 105.9 215 31.2
CSS0013911 Camellia sinensis var. sinensis HOM05D006080 ORTHO05D007382 8.8e-21 105.9 215 31.2
Sabra06G0110900 Salix brachista HOM05D006080 ORTHO05D007382 1.2e-20 105.5 130 39.2
Lalb_Chr23g0276361 Lupinus albus HOM05D006080 ORTHO05D007382 3.3e-20 104.0 123 43.1
CDE06G1744 Ceratophyllum demersum HOM05D000591 ORTHO05D000579 4.4e-20 103.6 199 31.2
COL.COLO4_18095 Corchorus olitorius HOM05D006080 ORTHO05D007382 4.4e-20 103.6 204 29.9
Lalb_Chr07g0181201 Lupinus albus HOM05D006080 ORTHO05D007382 4.4e-20 103.6 168 35.7
Gorai.009G035900 Gossypium raimondii HOM05D006080 ORTHO05D007382 5.7e-20 103.2 215 30.2
CsaV3_2G001150 Cucumis sativus L. HOM05D006080 ORTHO05D007382 1.3e-19 102.1 118 44.1
Potri.006G141800 Populus trichocarpa HOM05D006080 ORTHO05D007382 1.3e-19 102.1 125 39.2
Thecc.09G076600 Theobroma cacao HOM05D006080 ORTHO05D007382 1.3e-19 102.1 201 32.8
Duzib168G1192 Durio zibethinus HOM05D006080 ORTHO05D007382 1.7e-19 101.7 195 31.3
Phvul.009G021500 Phaseolus vulgaris HOM05D006080 ORTHO05D007382 2.8e-19 100.9 119 40.3
VMungo1215G0155 Vigna mungo HOM05D006080 ORTHO05D007382 3.7e-19 100.5 213 29.1
Glyma.17G049100 Glycine max HOM05D006080 ORTHO05D007382 4.8e-19 100.1 165 33.9
CARHR103620 Cardamine hirsuta HOM05D006080 ORTHO05D007382 8.2e-19 99.4 206 32.0
Duzib187G1039 Durio zibethinus HOM05D006080 ORTHO05D007382 1.1e-18 99.0 153 35.3
Manes.09G158700 Manihot esculenta HOM05D006080 ORTHO05D007382 1.1e-18 99.0 130 39.2
MSTRG.16549 Avicennia marina HOM05D006080 ORTHO05D007382 1.4e-18 98.6 225 29.8
Migut.B00654 Erythranthe guttata HOM05D006080 ORTHO05D007382 1.4e-18 98.6 242 31.4
CANSAT56G0731 Cannabis sativa HOM05D006080 ORTHO05D007382 1.8e-18 98.2 152 39.5
Dinv24252 Davidia involucrata HOM05D006080 ORTHO05D007382 1.8e-18 98.2 218 30.3
VMungo1309G1452 Vigna mungo HOM05D006080 ORTHO05D007382 1.8e-18 98.2 119 40.3
FvH4_5g31880 Fragaria vesca HOM05D006080 ORTHO05D007382 3.1e-18 97.4 111 46.8
FAN08G1188 Fragaria x ananassa HOM05D006080 ORTHO05D007382 3.1e-18 97.4 110 47.3
MELO3C004654.2 Cucumis melo HOM05D006080 ORTHO05D007382 5.3e-18 96.7 115 43.5
Phvul.009G114250 Phaseolus vulgaris HOM05D006080 ORTHO05D007382 5.3e-18 96.7 184 32.1
Phvul.011G177400 Phaseolus vulgaris HOM05D006080 ORTHO05D007382 5.3e-18 96.7 184 32.6
C07p09380 Brassica napus HOM05D006080 ORTHO05D007382 7.0e-18 96.3 168 35.7
BolC7t41361H Brassica oleracea HOM05D006080 ORTHO05D007382 7.0e-18 96.3 168 35.7
BraA07t28425Z Brassica rapa HOM05D006080 ORTHO05D007382 7.0e-18 96.3 166 35.5
Lj4g0003679 Lotus japonicus HOM05D006080 ORTHO05D007382 7.0e-18 96.3 179 33.5
BcaB06g26878 Brassica carinata HOM05D006080 ORTHO05D007382 9.1e-18 95.9 166 34.9
BcaC06g35949 Brassica carinata HOM05D006080 ORTHO05D007382 9.1e-18 95.9 168 35.7
Cpa.g.sc28.32 Carica papaya HOM05D006080 ORTHO05D007382 9.1e-18 95.9 127 40.2
A07p06330 Brassica napus HOM05D006080 ORTHO05D007382 2.7e-17 94.4 166 35.5
AUR62044025 Chenopodium quinoa HOM05D006080 ORTHO05D007382 2.7e-17 94.4 144 36.8
Thhalv10002477m.g Eutrema salsugineum HOM05D006080 ORTHO05D007382 2.7e-17 94.4 166 34.9
FAN18G2998 Fragaria x ananassa HOM05D006080 ORTHO05D007382 2.7e-17 94.4 111 45.9
Lj6g0017816 Lotus japonicus HOM05D006080 ORTHO05D007382 2.7e-17 94.4 204 28.4
Carub.0003s2711 Capsella rubella HOM05D006080 ORTHO05D007382 5.9e-17 93.2 150 35.3
Hund19654 Selenicereus undatus HOM05D006080 ORTHO05D007382 5.9e-17 93.2 176 31.2
THA.LOC104808885 Tarenaya hassleriana HOM05D006080 ORTHO05D007382 5.9e-17 93.2 125 39.2
AT2G06000 Arabidopsis thaliana HOM05D006080 ORTHO05D007382 7.7e-17 92.8 124 41.1
AUR62003304 Chenopodium quinoa HOM05D006080 ORTHO05D007382 7.7e-17 92.8 144 36.1
Gorai.013G224200 Gossypium raimondii HOM05D006080 ORTHO05D007382 7.7e-17 92.8 235 27.2
DCAR_029235 Daucus carota HOM05D006080 ORTHO05D007382 1.0e-16 92.4 211 28.9
SHI30075 Sapria himalayana HOM05D006080 ORTHO05D007382 1.0e-16 92.4 205 29.3
Sp3g24500 Schrenkiella parvula HOM05D006080 ORTHO05D007382 1.7e-16 91.7 166 34.9
ClCG11G001430 Citrullus lanatus HOM05D006080 ORTHO05D007382 2.2e-16 91.3 111 41.4
Gohir.A13G190700 Gossypium hirsutum HOM05D006080 ORTHO05D007382 3.8e-16 90.5 234 26.9
Aa31sc481G20 Aethionema arabicum HOM05D006080 ORTHO05D007382 5.0e-16 90.1 129 38.8
AL3G43560 Arabidopsis lyrata HOM05D006080 ORTHO05D007382 5.0e-16 90.1 148 37.2
RcHm_v2.0_Chr7g0227901 Rosa chinensis HOM05D006080 ORTHO05D007382 5.0e-16 90.1 133 40.6
THA.LOC104815335 Tarenaya hassleriana HOM05D006080 ORTHO05D007382 5.0e-16 90.1 128 37.5
TPR.G30187 Trifolium pratense HOM05D006080 ORTHO05D007382 6.5e-16 89.7 202 27.7
SalBow5G2015 Salvia bowleyana HOM05D006080 ORTHO05D007382 1.1e-15 89.0 209 30.1
SalBow5G4726 Salvia bowleyana HOM05D006080 ORTHO05D007382 1.1e-15 89.0 209 30.1
Glyma.04G019000 Glycine max HOM05D006080 ORTHO05D007382 1.5e-15 88.6 123 37.4
Lj9C313T10 Lonicera japonica HOM05D006080 ORTHO05D007382 1.9e-15 88.2 208 26.9
TPR.G27762 Trifolium pratense HOM05D006080 ORTHO05D007382 3.2e-15 87.4 206 31.1
HanXRQChr05g0146121 Helianthus annuus HOM05D006080 ORTHO05D007382 4.2e-15 87.0 207 28.5
Atru.BG.18.p Acer truncatum HOM05D006080 ORTHO05D007382 5.5e-15 86.7 92 44.6
Psat1g133120 Pisum sativum HOM05D006080 ORTHO05D007382 5.5e-15 86.7 180 32.8
PGR142G0728 Punica granatum HOM05D006080 ORTHO05D007382 4.7e-14 83.6 178 29.2
SalBow6G3562 Salvia bowleyana HOM05D006080 ORTHO05D007382 4.7e-14 83.6 228 27.2
arahy.Tifrunner.gnm1.ann1.3R1N4J Arachis hypogaea HOM05D006080 ORTHO05D007382 6.1e-14 83.2 157 33.8
SalBow6G5833 Salvia bowleyana HOM05D006080 ORTHO05D007382 8.0e-14 82.8 228 26.3
Ah.07g204920 Amaranthus hybridus HOM05D002607 ORTHO05D008816 1.0e-13 82.4 148 33.1
SGA_v2.0_scaffold332G48925 Striga asiatica HOM05D006080 ORTHO05D007382 1.8e-13 81.6 211 27.5
Sopen01g047140 Solanum pennellii HOM05D006080 ORTHO05D007382 2.3e-13 81.3 237 26.2
AUR62016281 Chenopodium quinoa HOM05D006080 ORTHO05D007382 4.0e-13 80.5 109 35.8
Glyma.06G019300 Glycine max HOM05D006080 ORTHO05D007382 4.0e-13 80.5 124 34.7
Medtr2g041700 Medicago truncatula HOM05D006080 ORTHO05D007382 5.2e-13 80.1 125 37.6
Lsat_1_v5_gn_2_12120 Lactuca sativa HOM05D006080 ORTHO05D007382 1.2e-12 79.0 127 34.6
Solyc01g104630.3 Solanum lycopersicum HOM05D006080 ORTHO05D007382 1.2e-12 79.0 236 25.4
PGSC0003DMG401029758 Solanum tuberosum HOM05D006080 ORTHO05D007382 1.2e-12 79.0 236 25.4
arahy.Tifrunner.gnm1.ann1.6R2JPG Arachis hypogaea HOM05D006819 ORTHO05D008763 1.5e-12 78.6 189 32.8
arahy.Tifrunner.gnm1.ann1.GQ0MHW Arachis hypogaea HOM05D006819 ORTHO05D008763 1.5e-12 78.6 189 32.8
TAR623G1671 Trochodendron aralioides HOM05D006819 ORTHO05D026583 5.7e-12 76.6 216 27.3
Medtr4g040410 Medicago truncatula HOM05D006080 ORTHO05D007382 3.7e-11 73.9 124 34.7
BcaC05g27058 Brassica carinata HOM05D005337 ORTHO05D006567 1.8e-10 71.6 161 25.5
Cc02_g22120 Coffea canephora HOM05D006080 ORTHO05D007382 3.1e-10 70.9 177 28.2
Haze_18132 Corylus avellana HOM05D008470 ORTHO05D010644 4.5e-09 67.0 179 26.3
CDE04G2722 Ceratophyllum demersum HOM05D008470 ORTHO05D010644 1.3e-08 65.5 175 25.7
Glyma.04G054900 Glycine max HOM05D008470 ORTHO05D010644 2.3e-08 64.7 215 24.2
Psat5g301600 Pisum sativum HOM05D006819 ORTHO05D008763 2.9e-08 64.3 178 25.8
TAR636G2211 Trochodendron aralioides HOM05D008470 ORTHO05D010644 3.8e-08 63.9 183 26.8
ATR0598G005 Amborella trichopoda HOM05D008470 ORTHO05D010644 1.1e-07 62.4 176 25.0
Ca_02204_v3 Cicer arietinum L. HOM05D006080 ORTHO05D007382 1.9e-07 61.6 130 30.0
CDE07G1153 Ceratophyllum demersum HOM05D007426 ORTHO05D009167 3.3e-07 60.8 138 27.5
ECA238G3807 Erigeron canadensis HOM05D006080 ORTHO05D007382 3.3e-07 60.8 91 36.3
Lalb_Chr03g0040111 Lupinus albus HOM05D000104 ORTHO05D009920 3.3e-07 60.8 186 24.7
HPP92_000751 Vanilla planifolia HOM05D005973 ORTHO05D007285 4.2e-07 60.5 215 23.3
Atru.BG.296.p Acer truncatum HOM05D005973 ORTHO05D007285 9.5e-07 59.3 186 22.6
CSS0042005 Camellia sinensis var. sinensis HOM05D007208 ORTHO05D009090 9.5e-07 59.3 196 25.5
Prupe.5G192300 Prunus persica HOM05D002453 ORTHO05D002107 1.2e-06 58.9 175 29.7
Ah.10g030910 Amaranthus hybridus HOM05D005973 ORTHO05D007285 1.6e-06 58.5 144 22.9
Cc10_g12890 Coffea canephora HOM05D000001 ORTHO05D000003 1.6e-06 58.5 116 31.0
GSVIVG01008742001 Vitis vinifera HOM05D000424 ORTHO05D000355 1.6e-06 58.5 130 30.0
Cc08_g01370 Coffea canephora HOM05D008470 ORTHO05D010644 2.1e-06 58.2 214 24.8
Lj7A578T58 Lonicera japonica HOM05D005973 ORTHO05D007285 2.1e-06 58.2 173 22.5
CAN.G1161.24 Capsicum annuum HOM05D007655 ORTHO05D009698 2.8e-06 57.8 138 32.6
Migut.O00313 Erythranthe guttata HOM05D006596 ORTHO05D008497 2.8e-06 57.8 164 26.8
Lj1g0027273 Lotus japonicus HOM05D008470 ORTHO05D010644 2.8e-06 57.8 177 23.2
Hma1.2p1_0180F.1_g079710 Hydrangea macrophylla HOM05D002986 ORTHO05D003966 3.6e-06 57.4 162 27.2
Phvul.011G168600 Phaseolus vulgaris HOM05D007208 ORTHO05D009090 3.6e-06 57.4 245 21.6
Sed0013038 Sechium edule HOM05D005764 ORTHO05D006600 3.6e-06 57.4 189 25.9
SMO361G0319 Selaginella moellendorffii HOM05D005362 ORTHO05D010796 3.6e-06 57.4 106 31.1
CBR_g19478 Chara braunii HOM05D006877 ORTHO05D000003 4.7e-06 57.0 160 25.6
BraA05t22010Z Brassica rapa HOM05D006707 ORTHO05D008243 6.1e-06 56.6 122 27.0
Aa31LG2G21280 Aethionema arabicum HOM05D000001 ORTHO05D009485 8.0e-06 56.2 152 21.7
arahy.Tifrunner.gnm1.ann1.W2W9XI Arachis hypogaea HOM05D000104 ORTHO05D009920 8.0e-06 56.2 187 23.0
TAR623G1644 Trochodendron aralioides HOM05D005973 ORTHO05D007285 8.0e-06 56.2 174 21.8


User provided reference genes

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