Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0598G173 Amborella trichopoda HOM05D003648 ORTHO05D004267 1.7e-149 532.7 284 100.0
ATR0598G250 Amborella trichopoda HOM05D003648 ORTHO05D004267 1.9e-28 130.6 264 39.4
GSVIVG01033479001 Vitis vinifera HOM05D003648 ORTHO05D004267 3.1e-18 96.7 216 35.6
TAR369G0578 Trochodendron aralioides HOM05D003648 ORTHO05D004267 7.7e-17 92.0 194 39.2
Manes.08G043500 Manihot esculenta HOM05D003648 ORTHO05D004267 1.3e-16 91.3 190 34.2
CDE05G0371 Ceratophyllum demersum HOM05D003648 ORTHO05D004267 6.5e-16 89.0 133 38.3
Manes.08G043600 Manihot esculenta HOM05D003648 ORTHO05D004267 8.5e-16 88.6 338 29.9
MELO3C009616.2 Cucumis melo HOM05D003648 ORTHO05D004267 1.1e-15 88.2 186 32.8
CDE06G0452 Ceratophyllum demersum HOM05D003648 ORTHO05D004267 7.2e-15 85.5 167 37.7
Peaxi162Scf00480g00036 Petunia axillaris HOM05D003648 ORTHO05D004267 7.2e-15 85.5 187 33.7
Sed0001893 Sechium edule HOM05D003648 ORTHO05D004267 7.2e-15 85.5 177 31.1
Nitab4.5_0003600g0010 Nicotiana tabacum HOM05D003648 ORTHO05D004267 9.4e-15 85.1 174 32.2
TWI77G0250 Tripterygium wilfordii HOM05D003648 ORTHO05D004267 9.4e-15 85.1 201 31.8
MBI19_g03064_MAGBIO Magnolia biondii HOM05D003648 ORTHO05D004267 1.6e-14 84.3 110 41.8
Oeu007752.1 Olea europaea HOM05D003648 ORTHO05D004267 1.6e-14 84.3 165 36.4
CDE04G2150 Ceratophyllum demersum HOM05D003648 ORTHO05D004267 2.1e-14 84.0 94 48.9
Medtr7g093360 Medicago truncatula HOM05D003648 ORTHO05D004267 2.1e-14 84.0 272 31.6
Actinidia22042 Actinidia chinensis HOM05D003648 ORTHO05D004267 3.6e-14 83.2 183 34.4
CsaV3_3G038720 Cucumis sativus L. HOM05D003648 ORTHO05D004267 3.6e-14 83.2 205 31.2
TWI53G1880 Tripterygium wilfordii HOM05D003648 ORTHO05D004267 3.6e-14 83.2 197 32.5
Potri.006G193300 Populus trichocarpa HOM05D003648 ORTHO05D004267 7.9e-14 82.0 255 32.2
Sabra16G0061500 Salix brachista HOM05D003648 ORTHO05D004267 1.8e-13 80.9 322 29.8
Sabra06G0148400 Salix brachista HOM05D003648 ORTHO05D004267 2.3e-13 80.5 253 31.6
Solyc10g080530.2 Solanum lycopersicum HOM05D003648 ORTHO05D004267 3.0e-13 80.1 132 38.6
PGSC0003DMG400023669 Solanum tuberosum HOM05D003648 ORTHO05D004267 3.0e-13 80.1 132 38.6
Hma1.2p1_0431F.1_g151600 Hydrangea macrophylla HOM05D003648 ORTHO05D004267 3.9e-13 79.7 126 38.9
Potri.016G058100 Populus trichocarpa HOM05D003648 ORTHO05D004267 3.9e-13 79.7 333 29.1
Prupe.7G079000 Prunus persica HOM05D003648 ORTHO05D004267 3.9e-13 79.7 135 37.8
CAN.G128.46 Capsicum annuum HOM05D003648 ORTHO05D004267 5.2e-13 79.3 180 33.3
Duzib093G1879 Durio zibethinus HOM05D003648 ORTHO05D004267 5.2e-13 79.3 237 28.3
Gohir.A01G137604 Gossypium hirsutum HOM05D003648 ORTHO05D004267 5.2e-13 79.3 298 29.5
Manes.09G036200 Manihot esculenta HOM05D003648 ORTHO05D004267 5.2e-13 79.3 272 30.5
TPR.G18228 Trifolium pratense HOM05D003648 ORTHO05D004267 5.2e-13 79.3 191 30.4
C03p28080 Brassica napus HOM05D003648 ORTHO05D004267 6.7e-13 79.0 91 47.3
MBI19_g23209_MAGBIO Magnolia biondii HOM05D003648 ORTHO05D004267 6.7e-13 79.0 125 40.0
Nn7g35998 Nelumbo nucifera HOM05D003648 ORTHO05D004267 6.7e-13 79.0 133 36.1
Os06g0207600 Oryza sativa ssp. japonica HOM05D003648 ORTHO05D004267 8.8e-13 78.6 39 82.1
Oeu039811.1 Olea europaea HOM05D003648 ORTHO05D004267 1.1e-12 78.2 94 44.7
RcHm_v2.0_Chr3g0479411 Rosa chinensis HOM05D003648 ORTHO05D004267 1.1e-12 78.2 155 32.9
THA.LOC104802623 Tarenaya hassleriana HOM05D003648 ORTHO05D004267 1.1e-12 78.2 306 33.0
TAR623G0235 Trochodendron aralioides HOM05D003648 ORTHO05D004267 1.1e-12 78.2 166 38.6
AL4G40410 Arabidopsis lyrata HOM05D003648 ORTHO05D004267 1.5e-12 77.8 91 47.3
AT2G42040 Arabidopsis thaliana HOM05D003648 ORTHO05D004267 1.5e-12 77.8 91 47.3
ClCG10G017600 Citrullus lanatus HOM05D003648 ORTHO05D004267 1.5e-12 77.8 40 77.5
Ciclev10012160m.g Citrus clementina HOM05D003648 ORTHO05D004267 1.5e-12 77.8 264 30.3
FAN05G4067 Fragaria x ananassa HOM05D003648 ORTHO05D004267 1.5e-12 77.8 208 29.3
FAN09G0401 Fragaria x ananassa HOM05D003648 ORTHO05D004267 1.5e-12 77.8 208 28.8
A03p23540 Brassica napus HOM05D003648 ORTHO05D004267 2.0e-12 77.4 91 46.2
BolC3t15177H Brassica oleracea HOM05D003648 ORTHO05D004267 2.0e-12 77.4 91 46.2
BraA03t11571Z Brassica rapa HOM05D003648 ORTHO05D004267 2.0e-12 77.4 91 46.2
Cpa.g.sc85.54 Carica papaya HOM05D003648 ORTHO05D004267 2.0e-12 77.4 145 35.2
MBI19_g43859_MAGBIO Magnolia biondii HOM05D003648 ORTHO05D004267 2.0e-12 77.4 48 68.8
Os02g0773600 Oryza sativa ssp. japonica HOM05D003648 ORTHO05D004267 2.0e-12 77.4 39 79.5
Atru.chr8.1128 Acer truncatum HOM05D003648 ORTHO05D004267 2.6e-12 77.0 208 33.7
Thhalv10017052m.g Eutrema salsugineum HOM05D003648 ORTHO05D004267 2.6e-12 77.0 91 45.1
FAN02G2154 Fragaria x ananassa HOM05D003648 ORTHO05D004267 2.6e-12 77.0 206 28.2
MBI13_g32435_MAGBIO Magnolia biondii HOM05D003648 ORTHO05D004267 2.6e-12 77.0 42 76.2
Sabra06G0148600 Salix brachista HOM05D003648 ORTHO05D004267 2.6e-12 77.0 210 28.6
BcaC01g05312 Brassica carinata HOM05D003648 ORTHO05D004267 3.3e-12 76.6 91 46.2
Carub.0004s2437 Capsella rubella HOM05D003648 ORTHO05D004267 3.3e-12 76.6 91 47.3
Dinv14314 Davidia involucrata HOM05D003648 ORTHO05D004267 3.3e-12 76.6 49 67.3
Phvul.007G260600 Phaseolus vulgaris HOM05D003648 ORTHO05D004267 3.3e-12 76.6 220 30.9
SEGI_09004 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 3.3e-12 76.6 53 64.2
EL10Ac3g06898 Beta vulgaris HOM05D003648 ORTHO05D004267 4.4e-12 76.3 130 36.2
FAN14G0601 Fragaria x ananassa HOM05D003648 ORTHO05D004267 4.4e-12 76.3 208 29.3
Glyma.02G171900 Glycine max HOM05D003648 ORTHO05D004267 4.4e-12 76.3 231 30.3
Lsat_1_v5_gn_9_26100 Lactuca sativa HOM05D003648 ORTHO05D004267 4.4e-12 76.3 210 31.0
Glyma.19G148700 Glycine max HOM05D003648 ORTHO05D004267 5.7e-12 75.9 42 73.8
MD12G1056100 Malus domestica HOM05D003648 ORTHO05D004267 5.7e-12 75.9 98 39.8
Thecc.05G173300 Theobroma cacao HOM05D003648 ORTHO05D004267 5.7e-12 75.9 242 29.8
VMungo1383G3335 Vigna mungo HOM05D003648 ORTHO05D004267 5.7e-12 75.9 42 73.8
BraA05t19262Z Brassica rapa HOM05D003648 ORTHO05D004267 7.4e-12 75.5 91 45.1
CAN.G128.47 Capsicum annuum HOM05D003648 ORTHO05D004267 7.4e-12 75.5 91 41.8
Haze_20003 Corylus avellana HOM05D003648 ORTHO05D004267 7.4e-12 75.5 124 40.3
DCAR_013539 Daucus carota HOM05D003648 ORTHO05D004267 7.4e-12 75.5 188 33.0
FvH4_6g22070 Fragaria vesca HOM05D003648 ORTHO05D004267 7.4e-12 75.5 209 29.2
Gohir.D01G125600 Gossypium hirsutum HOM05D003648 ORTHO05D004267 7.4e-12 75.5 294 32.7
Lj5g0018704 Lotus japonicus HOM05D003648 ORTHO05D004267 7.4e-12 75.5 40 75.0
Lalb_Chr18g0047911 Lupinus albus HOM05D003648 ORTHO05D004267 7.4e-12 75.5 83 45.8
Nn7g35986 Nelumbo nucifera HOM05D003648 ORTHO05D004267 7.4e-12 75.5 64 57.8
SEGI_34260 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 7.4e-12 75.5 58 62.1
THA.LOC104824476 Tarenaya hassleriana HOM05D003648 ORTHO05D004267 7.4e-12 75.5 253 30.4
TAR633G0715 Trochodendron aralioides HOM05D003648 ORTHO05D004267 7.4e-12 75.5 119 42.9
GSVIVG01033486001 Vitis vinifera HOM05D003648 ORTHO05D004267 7.4e-12 75.5 90 43.3
Aa31LG1G24140 Aethionema arabicum HOM05D003648 ORTHO05D004267 9.7e-12 75.1 129 38.0
MSTRG.19911 Avicennia marina HOM05D003648 ORTHO05D004267 9.7e-12 75.1 99 42.4
BcaC02g12455 Brassica carinata HOM05D003648 ORTHO05D004267 9.7e-12 75.1 91 45.1
A05p02700 Brassica napus HOM05D003648 ORTHO05D004267 9.7e-12 75.1 91 45.1
C04p03220 Brassica napus HOM05D003648 ORTHO05D004267 9.7e-12 75.1 91 45.1
BolC4t21960H Brassica oleracea HOM05D003648 ORTHO05D004267 9.7e-12 75.1 91 45.1
DCAR_017003 Daucus carota HOM05D003648 ORTHO05D004267 9.7e-12 75.1 172 34.3
Nn2g15698 Nelumbo nucifera HOM05D003648 ORTHO05D004267 9.7e-12 75.1 243 28.0
Nn2g15714 Nelumbo nucifera HOM05D003648 ORTHO05D004267 9.7e-12 75.1 52 63.5
Psat3g068040 Pisum sativum HOM05D003648 ORTHO05D004267 9.7e-12 75.1 128 36.7
SpUn1032_0010 Schrenkiella parvula HOM05D003648 ORTHO05D004267 9.7e-12 75.1 91 44.0
Hund19206 Selenicereus undatus HOM05D003648 ORTHO05D004267 9.7e-12 75.1 176 34.7
HPP92_016181 Vanilla planifolia HOM05D003648 ORTHO05D004267 9.7e-12 75.1 90 45.6
HPP92_026735 Vanilla planifolia HOM05D003648 ORTHO05D004267 9.7e-12 75.1 90 45.6
Gohir.A04G053800 Gossypium hirsutum HOM05D003648 ORTHO05D004267 1.3e-11 74.7 123 37.4
Gohir.D04G089900 Gossypium hirsutum HOM05D003648 ORTHO05D004267 1.3e-11 74.7 123 37.4
Gorai.012G100300 Gossypium raimondii HOM05D003648 ORTHO05D004267 1.3e-11 74.7 123 37.4
Ah.04g152510 Amaranthus hybridus HOM05D003648 ORTHO05D004267 1.7e-11 74.3 243 30.0
C04p69480 Brassica napus HOM05D003648 ORTHO05D004267 1.7e-11 74.3 91 47.3
BolC4t28447H Brassica oleracea HOM05D003648 ORTHO05D004267 1.7e-11 74.3 91 47.3
Cc06_g15770 Coffea canephora HOM05D003648 ORTHO05D004267 1.7e-11 74.3 118 37.3
SEGI_21966 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 1.7e-11 74.3 56 58.9
CARHR137130 Cardamine hirsuta HOM05D003648 ORTHO05D004267 2.2e-11 73.9 147 36.7
Gohir.1Z049549 Gossypium hirsutum HOM05D003648 ORTHO05D004267 2.2e-11 73.9 193 33.2
Gorai.002G156300 Gossypium raimondii HOM05D003648 ORTHO05D004267 2.2e-11 73.9 295 32.2
Lj1g0001044 Lotus japonicus HOM05D003648 ORTHO05D004267 2.2e-11 73.9 209 28.7
Lalb_Chr18g0047921 Lupinus albus HOM05D003648 ORTHO05D004267 2.2e-11 73.9 94 43.6
Actinidia22043 Actinidia chinensis HOM05D003648 ORTHO05D004267 2.8e-11 73.6 119 38.7
arahy.Tifrunner.gnm1.ann1.AL1Y46 Arachis hypogaea HOM05D003648 ORTHO05D004267 2.8e-11 73.6 42 71.4
arahy.Tifrunner.gnm1.ann1.SE7UXR Arachis hypogaea HOM05D003648 ORTHO05D004267 2.8e-11 73.6 42 71.4
COL.COLO4_29331 Corchorus olitorius HOM05D003648 ORTHO05D004267 3.7e-11 73.2 134 35.1
MD14G1055800 Malus domestica HOM05D003648 ORTHO05D004267 3.7e-11 73.2 295 27.8
Medtr7g093350 Medicago truncatula HOM05D003648 ORTHO05D004267 3.7e-11 73.2 270 29.3
vmacro07898 Vaccinium macrocarpon HOM05D003648 ORTHO05D004267 3.7e-11 73.2 110 48.2
Actinidia32398 Actinidia chinensis HOM05D003648 ORTHO05D004267 4.8e-11 72.8 107 41.1
CDE11G0439 Ceratophyllum demersum HOM05D003648 ORTHO05D004267 4.8e-11 72.8 78 46.2
Eucgr.A02456 Eucalyptus grandis HOM05D003648 ORTHO05D004267 4.8e-11 72.8 354 29.7
Sabra16G0061400 Salix brachista HOM05D003648 ORTHO05D004267 4.8e-11 72.8 163 33.1
Aqoxy2G00100 Aquilegia oxysepala HOM05D003648 ORTHO05D004267 6.3e-11 72.4 137 33.6
Dinv16371 Davidia involucrata HOM05D003648 ORTHO05D004267 6.3e-11 72.4 227 27.8
Duzib128G0816 Durio zibethinus HOM05D003648 ORTHO05D004267 6.3e-11 72.4 129 34.1
SEGI_22789 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 8.2e-11 72.0 99 41.4
ECA247G1467 Erigeron canadensis HOM05D003648 ORTHO05D004267 1.1e-10 71.6 250 30.8
Glyma.03G145500 Glycine max HOM05D003648 ORTHO05D004267 1.1e-10 71.6 121 35.5
BcaB01g03435 Brassica carinata HOM05D003648 ORTHO05D004267 1.4e-10 71.2 90 44.4
BcaC02g07267 Brassica carinata HOM05D003648 ORTHO05D004267 1.4e-10 71.2 91 46.2
A04p31970 Brassica napus HOM05D003648 ORTHO05D004267 1.4e-10 71.2 36 80.6
Haze_20001 Corylus avellana HOM05D003648 ORTHO05D004267 1.4e-10 71.2 143 38.5
Medtr1g054175 Medicago truncatula HOM05D003648 ORTHO05D004267 1.4e-10 71.2 224 29.0
SalBow6G7267 Salvia bowleyana HOM05D003648 ORTHO05D004267 1.4e-10 71.2 124 40.3
PGR004G0238 Punica granatum HOM05D003648 ORTHO05D004267 1.8e-10 70.9 305 28.2
QL07p024078 Quercus lobata HOM05D003648 ORTHO05D004267 1.8e-10 70.9 225 27.1
arahy.Tifrunner.gnm1.ann1.D8BKSU Arachis hypogaea HOM05D003648 ORTHO05D004267 2.4e-10 70.5 239 33.1
CANSAT64G1307 Cannabis sativa HOM05D003648 ORTHO05D004267 2.4e-10 70.5 93 39.8
Nn7g36026 Nelumbo nucifera HOM05D003648 ORTHO05D004267 2.4e-10 70.5 143 35.7
BcaB06g29223 Brassica carinata HOM05D003648 ORTHO05D004267 4.1e-10 69.7 91 51.6
BraA04t18655Z Brassica rapa HOM05D003648 ORTHO05D004267 4.1e-10 69.7 91 52.7
CiPaw.10G026000 Carya illinoinensis HOM05D003648 ORTHO05D004267 7.0e-10 68.9 197 29.4
arahy.Tifrunner.gnm1.ann1.DZ4RFW Arachis hypogaea HOM05D003648 ORTHO05D004267 9.1e-10 68.6 247 31.2
CSS0001516 Camellia sinensis var. sinensis HOM05D003648 ORTHO05D004267 9.1e-10 68.6 231 29.0
Psat0s5171g0040 Pisum sativum HOM05D003648 ORTHO05D004267 9.1e-10 68.6 120 35.0
CiPaw.09G029700 Carya illinoinensis HOM05D003648 ORTHO05D004267 1.2e-09 68.2 232 31.0
Zm00001eb193290 Zea mays HOM05D003648 ORTHO05D004267 1.2e-09 68.2 57 56.1
Actinidia22048 Actinidia chinensis HOM05D003648 ORTHO05D014310 1.6e-09 67.8 308 27.3
MSTRG.6486 Avicennia marina HOM05D003648 ORTHO05D004267 1.6e-09 67.8 131 35.1
HanXRQChr10g0289891 Helianthus annuus HOM05D003648 ORTHO05D004267 1.6e-09 67.8 124 33.9
Glyma.09G110100 Glycine max HOM05D003648 ORTHO05D004267 2.0e-09 67.4 203 28.6
VMungo0720G1699 Vigna mungo HOM05D003648 ORTHO05D004267 2.0e-09 67.4 261 26.8
Cfa020157 Carpinus fangiana HOM05D003648 ORTHO05D004267 7.7e-09 65.5 291 28.9
TPR.G15988 Trifolium pratense HOM05D003648 ORTHO05D004267 7.7e-09 65.5 227 30.4
Nitab4.5_0006890g0010 Nicotiana tabacum HOM05D003648 ORTHO05D004267 1.0e-08 65.1 215 30.2
Potri.016G058000 Populus trichocarpa HOM05D003648 ORTHO05D004267 1.3e-08 64.7 281 29.2
Thecc.05G174100 Theobroma cacao HOM05D014635 ORTHO05D014310 1.3e-08 64.7 154 32.5
AUR62015354 Chenopodium quinoa HOM05D003648 ORTHO05D004267 1.7e-08 64.3 118 33.9
Migut.J01846 Erythranthe guttata HOM05D003648 ORTHO05D004267 2.2e-08 63.9 101 38.6
Potri.006G193500 Populus trichocarpa HOM05D003648 ORTHO05D004267 3.8e-08 63.2 285 29.1
Phvul.001G143000 Phaseolus vulgaris HOM05D003648 ORTHO05D004267 5.0e-08 62.8 253 29.2
Dinv24064 Davidia involucrata HOM05D003648 ORTHO05D004267 6.5e-08 62.4 186 36.6
Ah.13g075770 Amaranthus hybridus HOM05D003648 ORTHO05D004267 1.9e-07 60.8 280 25.7
Rhsim03G0005500 Rhododendron simsii HOM05D003648 ORTHO05D004267 4.2e-07 59.7 194 32.5
CBR_g38226 Chara braunii HOM05D000019 ORTHO05D000353 7.2e-07 58.9 97 30.9
SEGI_00470 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 7.2e-07 58.9 169 30.8
COL.COLO4_29345 Corchorus olitorius HOM05D014635 ORTHO05D014310 9.4e-07 58.5 110 35.5
Gohir.D01G179100 Gossypium hirsutum HOM05D014635 ORTHO05D014310 1.2e-06 58.2 97 34.0
Duzib093G0164 Durio zibethinus HOM05D014635 ORTHO05D014310 4.7e-06 56.2 151 29.1
Aqoxy1G04270 Aquilegia oxysepala HOM05D003648 ORTHO05D004267 6.1e-06 55.8 36 58.3
QL07p024385 Quercus lobata HOM05D046221 ORTHO05D014310 8.0e-06 55.5 223 27.4


User provided reference genes

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