Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0598G132 Amborella trichopoda HOM05D007662 ORTHO05D009666 4.7e-35 150.6 74 100.0
Rhsim02G0233900 Rhododendron simsii HOM05D007662 ORTHO05D009666 6.0e-14 80.5 67 61.2
Nn7g35960 Nelumbo nucifera HOM05D007662 ORTHO05D009666 2.3e-13 78.6 63 65.1
Rhsim02G0233800 Rhododendron simsii HOM05D007662 ORTHO05D009666 3.0e-13 78.2 67 59.7
Atru.chr3.2207 Acer truncatum HOM05D007662 ORTHO05D009666 3.9e-13 77.8 53 66.0
Haze_22992 Corylus avellana HOM05D007662 ORTHO05D009666 6.7e-13 77.0 57 63.2
TAR623G1524 Trochodendron aralioides HOM05D007662 ORTHO05D009666 8.7e-13 76.6 60 61.7
Cfa009623 Carpinus fangiana HOM05D007662 ORTHO05D009666 1.1e-12 76.3 57 63.2
Solyc01g020320.3 Solanum lycopersicum HOM05D007662 ORTHO05D009666 1.5e-12 75.9 46 73.9
Hma1.2p1_0972F.1_g242860 Hydrangea macrophylla HOM05D007662 ORTHO05D009666 1.9e-12 75.5 46 73.9
Manes.15G104500 Manihot esculenta HOM05D007662 ORTHO05D009666 4.3e-12 74.3 60 63.3
PSO384G2541 Papaver somniferum HOM05D007662 ORTHO05D009666 5.6e-12 73.9 64 62.5
CiPaw.12G007400 Carya illinoinensis HOM05D007662 ORTHO05D009666 7.4e-12 73.6 48 68.8
Sopen01g015220 Solanum pennellii HOM05D007662 ORTHO05D009666 7.4e-12 73.6 46 71.7
Cc01_g01030 Coffea canephora HOM05D007662 ORTHO05D009666 1.3e-11 72.8 46 73.9
Nitab4.5_0007654g0010 Nicotiana tabacum HOM05D007662 ORTHO05D009666 1.6e-11 72.4 46 69.6
PGSC0003DMG400017905 Solanum tuberosum HOM05D007662 ORTHO05D009666 1.6e-11 72.4 59 61.0
MD03G1011000 Malus domestica HOM05D007662 ORTHO05D009666 2.1e-11 72.0 71 52.1
Prupe.6G011500 Prunus persica HOM05D007662 ORTHO05D009666 2.1e-11 72.0 57 57.9
HPP92_019156 Vanilla planifolia HOM05D007662 ORTHO05D009666 2.1e-11 72.0 42 73.8
MBI13_g29646_MAGBIO Magnolia biondii HOM05D007662 ORTHO05D009666 2.8e-11 71.6 61 59.0
Peaxi162Scf00451g00322 Petunia axillaris HOM05D007662 ORTHO05D009666 2.8e-11 71.6 45 71.1
Cpa.g.sc119.89 Carica papaya HOM05D007662 ORTHO05D009666 3.7e-11 71.2 39 79.5
AL3G53480 Arabidopsis lyrata HOM05D007662 ORTHO05D009666 4.8e-11 70.9 44 70.5
Peaxi162Scf00336g00087 Petunia axillaris HOM05D007662 ORTHO05D009666 4.8e-11 70.9 42 73.8
PGR119G1192 Punica granatum HOM05D007662 ORTHO05D009666 4.8e-11 70.9 38 84.2
Sabra01G0007400 Salix brachista HOM05D007662 ORTHO05D009666 4.8e-11 70.9 51 62.7
PGSC0003DMG400015999 Solanum tuberosum HOM05D007662 ORTHO05D009666 4.8e-11 70.9 49 67.3
Gohir.A08G012100 Gossypium hirsutum HOM05D007662 ORTHO05D009666 6.2e-11 70.5 64 60.9
CANSAT54G1122 Cannabis sativa HOM05D007662 ORTHO05D009666 8.1e-11 70.1 59 59.3
Lj1g0001682 Lotus japonicus HOM05D007662 ORTHO05D009666 8.1e-11 70.1 45 68.9
Os09g0446000 Oryza sativa ssp. japonica HOM05D007662 ORTHO05D009666 1.1e-10 69.7 37 83.8
Sp3g33680 Schrenkiella parvula HOM05D007662 ORTHO05D009666 1.1e-10 69.7 47 63.8
Carub.0003s3492 Capsella rubella HOM05D007662 ORTHO05D009666 1.4e-10 69.3 40 75.0
C08p42210 Brassica napus HOM05D007662 ORTHO05D009666 1.8e-10 68.9 46 69.6
BolC8t51780H Brassica oleracea HOM05D007662 ORTHO05D009666 1.8e-10 68.9 46 69.6
Carub.0003s3490 Capsella rubella HOM05D007662 ORTHO05D009666 1.8e-10 68.9 39 76.9
Phvul.008G106450 Phaseolus vulgaris HOM05D007662 ORTHO05D009666 1.8e-10 68.9 45 66.7
BcaB03g16842 Brassica carinata HOM05D007662 ORTHO05D009666 2.4e-10 68.6 38 76.3
DCAR_024358 Daucus carota HOM05D007662 ORTHO05D009666 2.4e-10 68.6 51 64.7
TWI32G0733 Tripterygium wilfordii HOM05D007662 ORTHO05D009666 2.4e-10 68.6 44 72.7
CARHR111030 Cardamine hirsuta HOM05D007662 ORTHO05D009666 3.1e-10 68.2 40 72.5
Glyma.18G180600 Glycine max HOM05D007662 ORTHO05D009666 3.1e-10 68.2 47 68.1
HanXRQChr02g0056871 Helianthus annuus HOM05D007662 ORTHO05D009666 3.1e-10 68.2 42 73.8
Lsat_1_v5_gn_6_51400 Lactuca sativa HOM05D007662 ORTHO05D009666 3.1e-10 68.2 47 74.5
Potri.001G009501 Populus trichocarpa HOM05D007662 ORTHO05D009666 3.1e-10 68.2 40 77.5
BcaB08g34910 Brassica carinata HOM05D007662 ORTHO05D009666 4.0e-10 67.8 46 69.6
COL.COLO4_10450 Corchorus olitorius HOM05D007662 ORTHO05D009666 4.0e-10 67.8 39 79.5
Glyma.07G131900 Glycine max HOM05D007662 ORTHO05D009666 4.0e-10 67.8 46 69.6
Gohir.D08G022600 Gossypium hirsutum HOM05D007662 ORTHO05D009666 4.0e-10 67.8 38 78.9
Gorai.004G017900 Gossypium raimondii HOM05D007662 ORTHO05D009666 4.0e-10 67.8 38 78.9
BcaC06g36736 Brassica carinata HOM05D007662 ORTHO05D009666 5.3e-10 67.4 38 76.3
A07p00270 Brassica napus HOM05D007662 ORTHO05D009666 5.3e-10 67.4 38 76.3
C07p00560 Brassica napus HOM05D007662 ORTHO05D009666 5.3e-10 67.4 38 76.3
BolC7t40501H Brassica oleracea HOM05D007662 ORTHO05D009666 5.3e-10 67.4 38 76.3
BraA07t27819Z Brassica rapa HOM05D007662 ORTHO05D009666 5.3e-10 67.4 38 76.3
Manes.04G126551 Manihot esculenta HOM05D007662 ORTHO05D009666 5.3e-10 67.4 50 64.0
SalBow6G4367 Salvia bowleyana HOM05D007662 ORTHO05D009666 6.9e-10 67.0 45 71.1
SalBow8G2777 Salvia bowleyana HOM05D007662 ORTHO05D009666 6.9e-10 67.0 45 71.1
GSVIVG01025388001 Vitis vinifera HOM05D007662 ORTHO05D009666 6.9e-10 67.0 39 76.9
Aqoxy1G00152 Aquilegia oxysepala HOM05D007662 ORTHO05D009666 9.0e-10 66.6 46 63.0
Thhalv10002142m.g Eutrema salsugineum HOM05D007662 ORTHO05D009666 9.0e-10 66.6 44 65.9
Nitab4.5_0000488g0050 Nicotiana tabacum HOM05D007662 ORTHO05D009666 9.0e-10 66.6 44 68.2
BcaC07g41215 Brassica carinata HOM05D007662 ORTHO05D009666 1.2e-09 66.2 46 67.4
AT2G20480 Arabidopsis thaliana HOM05D007662 ORTHO05D009666 1.5e-09 65.9 39 74.4
Duzib168G0137 Durio zibethinus HOM05D007662 ORTHO05D009666 1.5e-09 65.9 44 65.9
Aa31LG8G17430 Aethionema arabicum HOM05D007662 ORTHO05D009666 2.0e-09 65.5 40 72.5
Lalb_Chr03g0042221 Lupinus albus HOM05D007662 ORTHO05D009666 2.0e-09 65.5 38 78.9
Medtr4g095740 Medicago truncatula HOM05D007662 ORTHO05D009666 2.0e-09 65.5 45 64.4
A09p58880 Brassica napus HOM05D007662 ORTHO05D009666 3.4e-09 64.7 39 69.2
BraA09t41274Z Brassica rapa HOM05D007662 ORTHO05D009666 3.4e-09 64.7 39 69.2
Hund07566 Selenicereus undatus HOM05D007662 ORTHO05D009666 3.4e-09 64.7 48 58.3
arahy.Tifrunner.gnm1.ann1.MELV6S Arachis hypogaea HOM05D007662 ORTHO05D009666 4.5e-09 64.3 58 50.0
EL10Ac4g10342 Beta vulgaris HOM05D007662 ORTHO05D009666 4.5e-09 64.3 43 60.5
CSS0010518 Camellia sinensis var. sinensis HOM05D007662 ORTHO05D009666 4.5e-09 64.3 45 66.7
Eucgr.B02616 Eucalyptus grandis HOM05D007662 ORTHO05D009666 4.5e-09 64.3 52 63.5
Eucgr.L03549 Eucalyptus grandis HOM05D007662 ORTHO05D009666 4.5e-09 64.3 52 63.5
Sed0021510 Sechium edule HOM05D007662 ORTHO05D009666 5.8e-09 63.9 60 53.3
Migut.N02119 Erythranthe guttata HOM05D007662 ORTHO05D009666 7.6e-09 63.5 38 76.3
Oeu002702.1 Olea europaea HOM05D007662 ORTHO05D009666 7.6e-09 63.5 39 74.4
SEGI_07868 Sequoiadendron giganteum HOM05D007662 ORTHO05D009666 7.6e-09 63.5 37 73.0
FAN11G0548 Fragaria x ananassa HOM05D007662 ORTHO05D009666 1.0e-08 63.2 58 58.6
FAN16G0597 Fragaria x ananassa HOM05D007662 ORTHO05D009666 1.0e-08 63.2 58 58.6
FAN21G0034 Fragaria x ananassa HOM05D007662 ORTHO05D009666 1.0e-08 63.2 58 58.6
FAN25G2111 Fragaria x ananassa HOM05D007662 ORTHO05D009666 1.0e-08 63.2 58 58.6
Prupe.2G113800 Prunus persica HOM05D007662 ORTHO05D009666 2.2e-08 62.0 44 63.6
RcHm_v2.0_Chr5g0081401 Rosa chinensis HOM05D007662 ORTHO05D009666 2.2e-08 62.0 71 49.3
arahy.Tifrunner.gnm1.ann1.0G84UH Arachis hypogaea HOM05D007662 ORTHO05D009666 2.9e-08 61.6 58 48.3
Thecc.09G214700 Theobroma cacao HOM05D007662 ORTHO05D009666 3.8e-08 61.2 61 55.7
Zm00001eb314380 Zea mays HOM05D007662 ORTHO05D009666 3.8e-08 61.2 40 70.0
CsaV3_4G023520 Cucumis sativus L. HOM05D007662 ORTHO05D009666 4.9e-08 60.8 40 70.0
Psat3g140280 Pisum sativum HOM05D007662 ORTHO05D009666 6.5e-08 60.5 37 73.0
ClCG02G023850 Citrullus lanatus HOM05D007662 ORTHO05D009666 1.1e-07 59.7 40 67.5
unitig_8.g3321 Utricularia gibba HOM05D007662 ORTHO05D009666 1.4e-07 59.3 39 66.7
ECA233G5312 Erigeron canadensis HOM05D007662 ORTHO05D009666 7.1e-07 57.0 38 65.8


User provided reference genes

Program Settings